Wall clock time and date at job start Tue Mar 31 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46806 * 2 1 4 4 H 1.08994 * 109.47655 * 305.83057 * 3 2 1 5 5 C 1.50706 * 109.47079 * 185.83089 * 3 2 1 6 6 H 1.07993 * 120.00097 * 274.99672 * 5 3 2 7 7 C 1.37878 * 119.99620 * 94.99875 * 5 3 2 8 8 N 1.31515 * 119.99947 * 184.83517 * 7 5 3 9 9 Si 1.86799 * 120.00288 * 4.82829 * 7 5 3 10 10 H 1.48497 * 109.46931 * 84.86770 * 9 7 5 11 11 H 1.48495 * 109.47245 * 204.86564 * 9 7 5 12 12 H 1.48503 * 109.47223 * 324.86803 * 9 7 5 13 13 N 1.46903 * 109.47324 * 65.83589 * 3 2 1 14 14 C 1.46903 * 110.99651 * 274.99738 * 13 3 2 15 15 H 1.08997 * 115.55058 * 9.42104 * 14 13 3 16 16 C 1.52996 * 117.49749 * 223.74328 * 14 13 3 17 17 C 1.53005 * 117.49471 * 155.08407 * 14 13 3 18 18 H 1.08992 * 117.50173 * 0.02562 * 17 14 13 19 19 C 1.50707 * 117.49780 * 215.00326 * 17 14 13 20 20 C 1.38242 * 119.98429 * 299.73319 * 19 17 14 21 21 C 1.38215 * 120.01200 * 179.72699 * 20 19 17 22 22 C 1.38352 * 119.98364 * 0.54306 * 21 20 19 23 23 Cl 1.73601 * 120.01404 * 179.70591 * 22 21 20 24 24 C 1.38357 * 119.97388 * 359.72863 * 22 21 20 25 25 C 1.38215 * 119.98706 * 359.97438 * 24 22 21 26 26 H 1.08993 * 109.47415 * 299.99974 * 1 2 3 27 27 H 1.09003 * 109.46910 * 60.00471 * 1 2 3 28 28 H 1.09007 * 109.46638 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47415 * 240.00026 * 2 1 3 30 30 H 1.09003 * 109.46910 * 119.99529 * 2 1 3 31 31 H 0.96994 * 120.00158 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99938 * 38.94863 * 13 3 2 33 33 H 1.08994 * 117.50303 * 0.02562 * 16 14 13 34 34 H 1.09000 * 117.49630 * 145.02681 * 16 14 13 35 35 H 1.07999 * 119.99412 * 359.97438 * 20 19 17 36 36 H 1.07995 * 120.00960 * 180.26519 * 21 20 19 37 37 H 1.08002 * 120.00594 * 179.97438 * 24 22 21 38 38 H 1.07998 * 119.99327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5939 1.9856 -0.8331 5 6 3.5400 1.4450 -0.1444 6 1 4.1666 1.3330 0.7280 7 6 4.1124 1.5905 -1.3903 8 7 5.4169 1.4976 -1.5295 9 14 3.0351 1.9192 -2.8805 10 1 2.7685 3.3761 -2.9868 11 1 3.7306 1.4525 -4.1067 12 1 1.7498 1.1902 -2.7326 13 7 1.6686 2.0932 1.2636 14 6 0.3073 2.6410 1.1935 15 1 -0.2696 2.3554 0.3139 16 6 0.0797 4.0426 1.7633 17 6 -0.4521 2.8167 2.5100 18 1 0.0584 2.5262 3.4282 19 6 -1.9407 2.5817 2.4914 20 6 -2.7516 3.3524 1.6793 21 6 -4.1162 3.1336 1.6575 22 6 -4.6717 2.1507 2.4571 23 17 -6.3864 1.8803 2.4360 24 6 -3.8601 1.3835 3.2738 25 6 -2.4950 1.5991 3.2901 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8195 1.5995 -2.4060 32 1 1.7621 1.4554 2.0399 33 1 0.9399 4.5583 2.1898 34 1 -0.6474 4.6789 1.2588 35 1 -2.3184 4.1229 1.0588 36 1 -4.7492 3.7328 1.0199 37 1 -4.2933 0.6163 3.8985 38 1 -1.8615 1.0006 3.9280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:14 Heat of formation + Delta-G solvation = 20.402250 kcal Electronic energy + Delta-G solvation = -19163.577037 eV Core-core repulsion = 16224.407995 eV Total energy + Delta-G solvation = -2939.169042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78343 -39.03239 -37.48452 -36.45985 -34.19920 -32.06404 -32.01469 -30.68525 -28.75123 -24.81998 -24.58939 -23.60809 -21.99639 -21.83458 -21.09733 -19.01656 -18.29499 -17.08102 -16.64897 -16.14291 -16.10548 -15.42326 -15.25573 -15.06023 -14.73807 -14.46898 -14.40174 -13.76878 -13.66636 -13.46677 -12.92525 -12.72938 -12.67949 -12.55593 -12.42077 -12.22626 -12.16703 -11.82287 -11.76264 -11.67989 -11.47427 -11.26842 -10.96230 -10.66638 -9.99266 -9.47592 -8.78331 -8.25596 -6.27020 0.13117 0.34539 1.16953 1.34890 1.35735 1.45192 2.35702 2.52188 3.01455 3.15663 3.43188 3.77598 3.87614 3.96141 4.02617 4.20906 4.27587 4.38549 4.38938 4.42889 4.51562 4.56257 4.71571 4.77228 4.81496 5.02201 5.07482 5.12125 5.14080 5.20698 5.28153 5.28494 5.37866 5.50490 5.63825 5.71382 5.84339 6.10509 6.69091 6.77639 6.79359 7.37138 8.91888 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.003775 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.479407 B = 7415.129727 C = 7574.633394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C 0.195 3.805 4 H 0.034 0.966 5 C -0.496 4.496 6 H 0.033 0.967 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.654 5.654 14 C 0.025 3.975 15 H 0.096 0.904 16 C -0.165 4.165 17 C -0.119 4.119 18 H 0.120 0.880 19 C -0.046 4.046 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.053 4.053 23 Cl -0.075 7.075 24 C -0.110 4.110 25 C -0.106 4.106 26 H 0.067 0.933 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.264 0.736 32 H 0.336 0.664 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.099 1.680 8.229 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.051 0.949 7 C -0.186 4.186 8 N -0.592 5.592 9 Si 0.763 3.237 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.283 5.283 14 C -0.085 4.085 15 H 0.114 0.886 16 C -0.203 4.203 17 C -0.138 4.138 18 H 0.138 0.862 19 C -0.046 4.046 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.079 4.079 23 Cl -0.047 7.047 24 C -0.129 4.129 25 C -0.124 4.124 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.112 0.888 34 H 0.129 0.871 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.790 2.246 7.939 24.238 hybrid contribution -0.254 -0.694 -0.739 1.046 sum -23.045 1.552 7.200 24.193 Atomic orbital electron populations 1.21975 0.95332 1.01788 1.01573 1.22334 0.95501 0.99656 1.00933 1.19490 0.93309 0.89906 0.88718 0.94812 1.21167 0.91451 1.47639 0.93232 0.94902 1.25817 0.95963 0.94894 1.01930 1.70046 1.11911 1.52551 1.24709 0.85879 0.79907 0.79347 0.78599 1.19498 1.21475 1.16939 1.60482 1.20936 1.41023 1.05881 1.22752 0.89921 1.00043 0.95816 0.88646 1.23423 1.02619 0.91116 1.03181 1.21459 0.90975 1.04468 0.96932 0.86189 1.19374 0.93446 0.95596 0.96216 1.21230 0.92709 1.00093 0.99378 1.21206 0.95392 0.97416 0.98937 1.21076 0.84919 1.00285 1.01627 1.98363 1.12418 1.95978 1.97911 1.21230 0.93192 0.99653 0.98789 1.21148 0.94413 0.97566 0.99312 0.91452 0.93781 0.92183 0.94017 0.92723 0.92667 0.84395 0.88752 0.87147 0.84111 0.83707 0.83466 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 8.60 71.98 0.62 -3.98 16 2 C -0.14 -5.63 5.38 30.59 0.16 -5.47 16 3 C 0.19 8.65 1.81 44.17 0.08 8.73 16 4 H 0.03 1.54 4.89 -2.39 -0.01 1.53 16 5 C -0.50 -27.91 9.19 25.60 0.24 -27.68 16 6 H 0.03 2.07 8.06 -2.91 -0.02 2.05 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.94 44.03 26.99 68.60 1.85 45.88 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.57 6.82 99.48 0.68 -9.89 16 13 N -0.65 -24.82 6.44 -473.30 -3.05 -27.87 16 14 C 0.03 0.76 3.69 44.91 0.17 0.93 16 15 H 0.10 2.93 6.08 -2.39 -0.01 2.91 16 16 C -0.17 -4.22 9.79 30.62 0.30 -3.92 16 17 C -0.12 -2.77 5.84 -11.51 -0.07 -2.84 16 18 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 19 C -0.05 -0.95 5.61 -19.86 -0.11 -1.07 16 20 C -0.12 -2.27 9.30 22.27 0.21 -2.07 16 21 C -0.11 -2.04 9.83 22.29 0.22 -1.82 16 22 C -0.05 -0.99 6.32 22.33 0.14 -0.84 16 23 Cl -0.08 -1.32 28.96 -2.72 -0.08 -1.40 16 24 C -0.11 -1.94 9.83 22.29 0.22 -1.72 16 25 C -0.11 -1.97 9.74 22.26 0.22 -1.75 16 26 H 0.07 1.90 5.75 -2.39 -0.01 1.88 16 27 H 0.04 1.35 7.96 -2.39 -0.02 1.34 16 28 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.05 2.09 8.02 -2.39 -0.02 2.07 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.34 11.94 8.35 -89.69 -0.75 11.20 16 33 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.11 2.35 6.17 -2.39 -0.01 2.34 16 35 H 0.14 2.48 6.02 -2.91 -0.02 2.46 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -63.96 324.13 2.17 -61.79 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.29 Total: 23.23 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 2.85 Total: -42.41 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.75 Total: -87.09 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.85 Total: 45.88 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -63.96 2.17 -61.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.195 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds