Wall clock time and date at job start Tue Mar 31 2020 00:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 H 1.08996 * 109.47534 * 304.99819 * 3 2 1 5 5 C 1.50703 * 109.46999 * 184.99691 * 3 2 1 6 6 H 1.07997 * 119.99979 * 240.00233 * 5 3 2 7 7 C 1.37875 * 120.00027 * 59.99921 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00202 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46924 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46578 * 120.00311 * 9 7 5 12 12 H 1.48494 * 109.47426 * 240.00185 * 9 7 5 13 13 N 1.46898 * 109.47098 * 65.00089 * 3 2 1 14 14 C 1.46906 * 110.99888 * 274.99671 * 13 3 2 15 15 H 1.08998 * 115.54973 * 350.67067 * 14 13 3 16 16 C 1.53000 * 117.49574 * 136.37671 * 14 13 3 17 17 C 1.52995 * 117.49936 * 204.99853 * 14 13 3 18 18 H 1.09002 * 117.49899 * 0.02728 * 17 14 13 19 19 C 1.50707 * 117.49944 * 145.01974 * 17 14 13 20 20 C 1.38238 * 119.98000 * 59.72821 * 19 17 14 21 21 C 1.38220 * 120.00630 * 179.73043 * 20 19 17 22 22 C 1.38351 * 119.98638 * 0.53935 * 21 20 19 23 23 Cl 1.73607 * 120.01150 * 179.70813 * 22 21 20 24 24 C 1.38354 * 119.97570 * 359.73563 * 22 21 20 25 25 C 1.38210 * 119.98151 * 359.97438 * 24 22 21 26 26 H 1.09003 * 109.46397 * 60.00197 * 1 2 3 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47076 * 300.00010 * 1 2 3 29 29 H 1.09004 * 109.47294 * 239.99894 * 2 1 3 30 30 H 1.09002 * 109.46885 * 120.00394 * 2 1 3 31 31 H 0.97003 * 119.99990 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00533 * 151.04078 * 13 3 2 33 33 H 1.09004 * 117.49684 * 214.97522 * 16 14 13 34 34 H 1.09000 * 117.50570 * 0.02562 * 16 14 13 35 35 H 1.07997 * 119.99932 * 359.97438 * 20 19 17 36 36 H 1.08003 * 120.00382 * 180.27323 * 21 20 19 37 37 H 1.07998 * 120.00303 * 179.97438 * 24 22 21 38 38 H 1.08007 * 119.98654 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8810 -1.3816 10 1 6.5988 1.5460 -0.1940 11 1 6.4970 -0.5178 -1.4628 12 1 6.3992 1.6164 -2.6100 13 7 1.6514 2.0992 1.2552 14 6 0.2913 2.6467 1.1637 15 1 -0.1547 2.6340 0.1693 16 6 -0.6393 2.4300 2.3587 17 6 -0.0614 3.8192 2.0812 18 1 0.7159 4.1846 2.7523 19 6 -0.9993 4.8679 1.5409 20 6 -2.2746 4.5142 1.1415 21 6 -3.1372 5.4765 0.6512 22 6 -2.7201 6.7918 0.5496 23 17 -3.8004 7.9996 -0.0733 24 6 -1.4417 7.1440 0.9442 25 6 -0.5822 6.1819 1.4400 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0605 -2.9501 32 1 2.3140 2.8170 1.5080 33 1 -1.6979 2.2745 2.1505 34 1 -0.2423 1.8815 3.2129 35 1 -2.5984 3.4867 1.2164 36 1 -4.1350 5.2010 0.3433 37 1 -1.1155 8.1705 0.8648 38 1 0.4157 6.4569 1.7484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:19 Heat of formation + Delta-G solvation = 33.294515 kcal Electronic energy + Delta-G solvation = -18968.455036 eV Core-core repulsion = 16029.845045 eV Total energy + Delta-G solvation = -2938.609992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75700 -37.63766 -36.46222 -34.83615 -31.98130 -31.16855 -30.55808 -29.57170 -26.25736 -23.84138 -22.93983 -22.59509 -20.82770 -20.24314 -19.45046 -17.39207 -16.56627 -15.80547 -15.29110 -14.84306 -14.63178 -14.19982 -13.89175 -13.59486 -13.53254 -12.82490 -12.69058 -12.31377 -12.00921 -11.77305 -11.71743 -11.65101 -11.23451 -11.17190 -10.92126 -10.84111 -10.67441 -10.34206 -10.22939 -10.08643 -9.65619 -9.47562 -9.11834 -8.83583 -8.52867 -8.37585 -7.27705 -6.06612 -4.13757 1.06454 1.22151 2.03196 3.26155 3.34422 3.37962 3.48465 4.28622 4.36322 4.64140 4.72240 4.79227 5.06997 5.15277 5.24084 5.27123 5.28430 5.49803 5.65642 5.83351 5.86692 6.02022 6.10403 6.18848 6.26325 6.33088 6.40607 6.46472 6.59099 6.62172 6.73783 7.04548 7.11044 7.34670 7.53879 7.74042 7.84775 8.24133 8.33209 8.57852 8.96143 9.52289 10.98954 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003587 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.160200 B = 7804.008669 C = 8236.358337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.521 4.521 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.655 5.655 14 C 0.065 3.935 15 H 0.095 0.905 16 C -0.168 4.168 17 C -0.153 4.153 18 H 0.113 0.887 19 C -0.029 4.029 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.047 4.047 23 Cl -0.081 7.081 24 C -0.107 4.107 25 C -0.105 4.105 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 10.391 6.382 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.286 5.286 14 C -0.047 4.047 15 H 0.113 0.887 16 C -0.207 4.207 17 C -0.172 4.172 18 H 0.131 0.869 19 C -0.029 4.029 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.073 4.073 23 Cl -0.053 7.053 24 C -0.126 4.126 25 C -0.123 4.123 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.171 9.804 6.428 16.899 hybrid contribution 0.987 0.837 -0.801 1.522 sum -11.185 10.641 5.627 16.432 Atomic orbital electron populations 1.21999 0.99665 0.99042 1.00276 1.21524 0.91538 0.99401 1.02038 1.19196 0.94591 0.91157 0.83851 0.97785 1.21302 0.91182 1.38230 1.05288 0.92153 1.24909 0.98320 0.95073 0.95594 1.69899 1.34836 1.38384 1.09435 0.86476 0.85432 0.77764 0.77946 1.19753 1.20952 1.21081 1.60538 0.99506 1.31425 1.37138 1.22714 0.93700 0.94595 0.93711 0.88709 1.23312 0.98624 0.96440 1.02299 1.21607 1.01517 0.88600 1.05501 0.86878 1.19398 0.93628 0.93692 0.96217 1.21083 0.93236 0.99701 0.98981 1.21007 1.00488 0.90972 1.00019 1.20876 0.92305 0.90233 1.03916 1.98354 1.64623 1.56234 1.86044 1.21004 0.91961 1.00343 0.99278 1.20965 0.99679 0.92070 0.99635 0.94654 0.95319 0.92773 0.89170 0.94356 0.92914 0.84503 0.89184 0.88129 0.84843 0.85145 0.85137 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.85 37.16 0.33 -2.71 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.31 2.21 -68.87 -0.15 5.16 16 4 H 0.00 0.12 7.57 -51.93 -0.39 -0.27 16 5 C -0.52 -13.87 8.59 -34.44 -0.30 -14.17 16 6 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.66 -13.17 6.50 -100.96 -0.66 -13.83 16 14 C 0.06 1.09 3.68 -67.71 -0.25 0.84 16 15 H 0.10 1.74 7.10 -51.93 -0.37 1.37 16 16 C -0.17 -2.34 8.68 -26.73 -0.23 -2.58 16 17 C -0.15 -2.11 5.84 -91.77 -0.54 -2.64 16 18 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 19 C -0.03 -0.37 5.61 -104.62 -0.59 -0.96 16 20 C -0.11 -1.36 9.29 -39.59 -0.37 -1.72 16 21 C -0.11 -1.21 9.83 -39.55 -0.39 -1.60 16 22 C -0.05 -0.55 6.32 -39.50 -0.25 -0.80 16 23 Cl -0.08 -0.87 28.96 -51.86 -1.50 -2.37 16 24 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 25 C -0.11 -1.26 9.73 -39.59 -0.39 -1.65 16 26 H 0.03 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.99 4.97 -51.93 -0.26 0.73 16 29 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.34 6.60 8.18 -39.29 -0.32 6.27 16 33 H 0.09 1.10 6.18 -51.93 -0.32 0.78 16 34 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.13 1.47 6.03 -52.49 -0.32 1.15 16 36 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -27.32 323.61 -10.62 -37.94 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.20 Total: 7.22 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -3.74 Total: -25.50 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.03 Total: -38.01 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.32 -10.62 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.237 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds