Wall clock time and date at job start Tue Mar 31 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 H 1.08996 * 109.47534 * 304.99819 * 3 2 1 5 5 C 1.50703 * 109.46999 * 184.99691 * 3 2 1 6 6 H 1.07997 * 119.99979 * 240.00233 * 5 3 2 7 7 C 1.37875 * 120.00027 * 59.99921 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00202 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46924 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46578 * 120.00311 * 9 7 5 12 12 H 1.48494 * 109.47426 * 240.00185 * 9 7 5 13 13 N 1.46898 * 109.47098 * 65.00089 * 3 2 1 14 14 C 1.46906 * 110.99888 * 274.99671 * 13 3 2 15 15 H 1.08998 * 115.54973 * 350.67067 * 14 13 3 16 16 C 1.53000 * 117.49574 * 136.37671 * 14 13 3 17 17 C 1.52995 * 117.49936 * 204.99853 * 14 13 3 18 18 H 1.09002 * 117.49899 * 0.02728 * 17 14 13 19 19 C 1.50707 * 117.49944 * 145.01974 * 17 14 13 20 20 C 1.38238 * 119.98000 * 59.72821 * 19 17 14 21 21 C 1.38220 * 120.00630 * 179.73043 * 20 19 17 22 22 C 1.38351 * 119.98638 * 0.53935 * 21 20 19 23 23 Cl 1.73607 * 120.01150 * 179.70813 * 22 21 20 24 24 C 1.38354 * 119.97570 * 359.73563 * 22 21 20 25 25 C 1.38210 * 119.98151 * 359.97438 * 24 22 21 26 26 H 1.09003 * 109.46397 * 60.00197 * 1 2 3 27 27 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47076 * 300.00010 * 1 2 3 29 29 H 1.09004 * 109.47294 * 239.99894 * 2 1 3 30 30 H 1.09002 * 109.46885 * 120.00394 * 2 1 3 31 31 H 0.97003 * 119.99990 * 179.97438 * 8 7 5 32 32 H 1.00902 * 111.00533 * 151.04078 * 13 3 2 33 33 H 1.09004 * 117.49684 * 214.97522 * 16 14 13 34 34 H 1.09000 * 117.50570 * 0.02562 * 16 14 13 35 35 H 1.07997 * 119.99932 * 359.97438 * 20 19 17 36 36 H 1.08003 * 120.00382 * 180.27323 * 21 20 19 37 37 H 1.07998 * 120.00303 * 179.97438 * 24 22 21 38 38 H 1.08007 * 119.98654 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1434 0.8782 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8810 -1.3816 10 1 6.5988 1.5460 -0.1940 11 1 6.4970 -0.5178 -1.4628 12 1 6.3992 1.6164 -2.6100 13 7 1.6514 2.0992 1.2552 14 6 0.2913 2.6467 1.1637 15 1 -0.1547 2.6340 0.1693 16 6 -0.6393 2.4300 2.3587 17 6 -0.0614 3.8192 2.0812 18 1 0.7159 4.1846 2.7523 19 6 -0.9993 4.8679 1.5409 20 6 -2.2746 4.5142 1.1415 21 6 -3.1372 5.4765 0.6512 22 6 -2.7201 6.7918 0.5496 23 17 -3.8004 7.9996 -0.0733 24 6 -1.4417 7.1440 0.9442 25 6 -0.5822 6.1819 1.4400 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0605 -2.9501 32 1 2.3140 2.8170 1.5080 33 1 -1.6979 2.2745 2.1505 34 1 -0.2423 1.8815 3.2129 35 1 -2.5984 3.4867 1.2164 36 1 -4.1350 5.2010 0.3433 37 1 -1.1155 8.1705 0.8648 38 1 0.4157 6.4569 1.7484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164538.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:18 Heat of formation + Delta-G solvation = 19.665959 kcal Electronic energy + Delta-G solvation = -18969.046015 eV Core-core repulsion = 16029.845045 eV Total energy + Delta-G solvation = -2939.200970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75355 -38.90688 -37.45490 -36.41104 -33.87082 -32.06507 -32.00179 -30.85885 -28.12903 -24.92518 -24.61439 -23.61268 -22.13724 -21.50726 -21.11635 -18.62543 -18.20170 -17.00559 -16.71615 -16.21184 -15.85503 -15.68788 -15.36316 -14.49898 -14.46452 -14.39244 -14.20541 -13.83350 -13.61212 -13.14949 -13.02118 -12.75281 -12.71274 -12.61518 -12.43403 -12.18460 -12.02297 -11.78227 -11.72153 -11.66200 -11.27012 -11.08627 -10.77181 -10.46388 -10.00650 -9.50518 -8.83056 -8.11958 -6.26236 0.12416 0.33139 1.15193 1.41035 1.43315 1.54414 2.41428 2.52383 3.12384 3.15783 3.46771 3.77885 3.87517 3.94972 4.02491 4.22631 4.37293 4.46386 4.53986 4.63790 4.70449 4.74178 4.78916 4.87758 5.03879 5.08148 5.13249 5.19295 5.26532 5.36861 5.38348 5.51337 5.62655 5.66794 5.73614 5.83182 5.90277 6.31053 6.49577 6.79841 7.00755 7.44059 8.92772 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003587 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.160200 B = 7804.008669 C = 8236.358337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 C 0.228 3.772 4 H -0.032 1.032 5 C -0.540 4.540 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.652 5.652 14 C 0.034 3.966 15 H 0.077 0.923 16 C -0.150 4.150 17 C -0.129 4.129 18 H 0.120 0.880 19 C -0.048 4.048 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.054 4.054 23 Cl -0.074 7.074 24 C -0.111 4.111 25 C -0.111 4.111 26 H 0.028 0.972 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.334 0.666 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.605 11.222 7.428 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.578 4.578 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.282 5.282 14 C -0.077 4.077 15 H 0.095 0.905 16 C -0.188 4.188 17 C -0.148 4.148 18 H 0.138 0.862 19 C -0.049 4.049 20 C -0.134 4.134 21 C -0.129 4.129 22 C -0.080 4.080 23 Cl -0.045 7.045 24 C -0.130 4.130 25 C -0.129 4.129 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.166 0.834 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.863 10.647 7.491 18.301 hybrid contribution 1.119 0.663 -1.130 1.723 sum -11.744 11.309 6.361 17.501 Atomic orbital electron populations 1.21863 0.96688 1.00320 1.00877 1.21358 0.94233 0.98539 0.99911 1.18921 0.93319 0.91430 0.84384 1.01447 1.21678 0.92701 1.38080 1.05353 0.92260 1.25698 1.02645 0.94794 0.95366 1.70035 1.36506 1.39039 1.09861 0.85483 0.80251 0.77724 0.78014 1.18996 1.20703 1.20782 1.60464 1.01174 1.32009 1.34586 1.22570 0.92382 0.98558 0.94205 0.90541 1.23376 0.99001 0.96316 1.00087 1.21544 1.01323 0.88497 1.03475 0.86238 1.19442 0.94013 0.93881 0.97532 1.21243 0.93076 1.00399 0.98726 1.21230 1.01222 0.90814 0.99645 1.21069 0.92641 0.90644 1.03664 1.98358 1.64341 1.55892 1.85904 1.21228 0.91813 1.01134 0.98797 1.21166 1.00388 0.91916 0.99447 0.95239 0.93630 0.90956 0.92358 0.95212 0.92941 0.84672 0.87106 0.87955 0.83886 0.83455 0.83447 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.85 71.98 0.64 -4.90 16 2 C -0.10 -4.93 5.45 30.59 0.17 -4.76 16 3 C 0.23 11.34 2.21 44.17 0.10 11.44 16 4 H -0.03 -1.79 7.57 -2.39 -0.02 -1.81 16 5 C -0.54 -29.28 8.59 25.60 0.22 -29.06 16 6 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.92 -52.48 11.29 21.45 0.24 -52.24 16 9 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.65 -26.37 6.50 -473.32 -3.08 -29.44 16 14 C 0.03 1.12 3.68 44.91 0.17 1.29 16 15 H 0.08 2.84 7.10 -2.39 -0.02 2.83 16 16 C -0.15 -3.85 8.68 30.59 0.27 -3.59 16 17 C -0.13 -3.36 5.84 -11.54 -0.07 -3.43 16 18 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 19 C -0.05 -1.17 5.61 -19.86 -0.11 -1.28 16 20 C -0.12 -2.61 9.29 22.27 0.21 -2.40 16 21 C -0.11 -2.31 9.83 22.29 0.22 -2.09 16 22 C -0.05 -1.15 6.32 22.32 0.14 -1.01 16 23 Cl -0.07 -1.45 28.96 -2.72 -0.08 -1.52 16 24 C -0.11 -2.32 9.83 22.29 0.22 -2.10 16 25 C -0.11 -2.48 9.73 22.26 0.22 -2.26 16 26 H 0.03 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 2.56 4.97 -2.39 -0.01 2.55 16 29 H 0.06 3.20 5.95 -2.38 -0.01 3.19 16 30 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.33 13.24 8.18 -89.69 -0.73 12.51 16 33 H 0.11 2.39 6.18 -2.38 -0.01 2.37 16 34 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.14 2.83 6.03 -2.91 -0.02 2.81 16 36 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -59.13 323.61 2.27 -56.86 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.33 Total: 24.06 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 2.82 Total: -42.93 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -2.83 Total: -81.68 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.52 kcal Total: -59.13 2.27 -56.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164538.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.528 kcal (2) G-P(sol) polarization free energy of solvation -59.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds