Wall clock time and date at job start Tue Mar 31 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.47157 * 111.00347 * 189.06037 * 13 3 2 15 15 C 1.52898 * 108.50011 * 165.30988 * 14 13 3 16 16 C 1.50731 * 109.94359 * 50.45820 * 15 14 13 17 17 C 1.38690 * 118.46489 * 163.22242 * 16 15 14 18 18 C 1.38012 * 120.36126 * 179.59638 * 17 16 15 19 19 C 1.38371 * 119.81449 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.07791 * 180.13985 * 19 18 17 21 21 C 1.38132 * 119.84583 * 0.09033 * 19 18 17 22 22 C 1.37840 * 121.65884 * 342.97483 * 16 15 14 23 23 C 1.46627 * 111.00117 * 66.04305 * 13 3 2 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 26 26 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.63057 * 285.02173 * 14 13 3 31 31 H 1.08996 * 109.62893 * 45.61031 * 14 13 3 32 32 H 1.08993 * 109.39527 * 290.30761 * 15 14 13 33 33 H 1.08997 * 109.30827 * 170.54423 * 15 14 13 34 34 H 1.08001 * 119.81587 * 359.57234 * 17 16 15 35 35 H 1.08000 * 120.08778 * 180.02562 * 18 17 16 36 36 H 1.07991 * 119.81878 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.26722 * 296.17588 * 23 13 3 38 38 H 1.08994 * 109.26963 * 55.64873 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9337 3.5426 1.2046 15 6 1.1900 4.2230 2.3543 16 6 1.4781 3.5062 3.6486 17 6 1.1963 4.1561 4.8410 18 6 1.4370 3.5331 6.0487 19 6 1.9617 2.2529 6.0700 20 17 2.2636 1.4614 7.5852 21 6 2.2437 1.6057 4.8826 22 6 2.0044 2.2324 3.6685 23 6 2.3330 1.4883 2.4008 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 3.0054 3.7102 1.3115 31 1 1.5895 3.9499 0.2539 32 1 0.1183 4.1977 2.1573 33 1 1.5191 5.2591 2.4334 34 1 0.7868 5.1553 4.8242 35 1 1.2155 4.0431 6.9746 36 1 2.6536 0.6068 4.8997 37 1 2.0120 0.4513 2.4990 38 1 3.4100 1.5169 2.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:12 Heat of formation + Delta-G solvation = 10.041198 kcal Electronic energy + Delta-G solvation = -19849.996527 eV Core-core repulsion = 16910.378196 eV Total energy + Delta-G solvation = -2939.618331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85523 -37.36806 -36.26366 -33.82296 -32.28632 -31.55117 -30.34799 -28.66586 -26.61892 -24.48131 -23.21116 -22.23991 -22.06298 -19.74865 -18.80930 -16.76479 -16.42256 -15.54280 -15.10721 -14.78138 -14.34518 -14.31161 -13.59202 -13.31532 -13.13772 -12.83864 -12.73206 -12.42370 -11.92624 -11.79291 -11.69157 -11.41992 -11.25222 -10.99615 -10.88649 -10.79223 -10.63579 -10.48580 -10.27148 -9.98394 -9.69463 -9.48258 -9.14981 -8.67000 -8.41902 -8.22808 -7.21491 -6.04775 -4.18736 1.33447 1.45341 2.21693 3.23057 3.30963 3.33362 3.77618 4.34761 4.83172 4.94232 5.02165 5.11740 5.19995 5.41778 5.43368 5.66846 5.80220 5.91462 6.07494 6.09336 6.19070 6.30591 6.34260 6.39479 6.45388 6.51432 6.59726 6.65144 6.68584 6.82346 7.02622 7.08394 7.15127 7.28625 7.54676 7.70671 7.90122 8.07795 8.21185 8.38948 8.90681 9.49378 10.94433 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.004968 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.673647 B = 5634.904347 C = 5948.841055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.042 0.958 5 C -0.548 4.548 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.527 5.527 14 C 0.059 3.941 15 C -0.078 4.078 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.123 4.123 19 C -0.038 4.038 20 Cl -0.085 7.085 21 C -0.112 4.112 22 C -0.048 4.048 23 C 0.090 3.910 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.025 0.975 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 5.161 12.357 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.060 0.940 5 C -0.587 4.587 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.251 5.251 14 C -0.069 4.069 15 C -0.115 4.115 16 C -0.062 4.062 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.065 4.065 20 Cl -0.056 7.056 21 C -0.131 4.131 22 C -0.049 4.049 23 C -0.038 4.038 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.044 0.956 27 H 0.111 0.889 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.715 4.925 12.344 14.102 hybrid contribution 2.013 -0.075 -0.005 2.014 sum -2.702 4.851 12.340 13.532 Atomic orbital electron populations 1.21710 0.98787 0.98495 1.00607 1.21600 0.92326 0.99067 1.01991 1.19337 0.93179 0.91337 0.85424 0.94037 1.21718 0.92755 1.38406 1.05781 0.92491 1.24888 0.97809 0.94888 0.95609 1.69870 1.34828 1.37924 1.09477 0.86695 0.86172 0.78442 0.77314 1.20640 1.21141 1.20055 1.62787 1.56060 1.01701 1.04539 1.21911 0.97816 0.90165 0.97041 1.20650 1.01548 0.97680 0.91654 1.19803 0.97207 0.93934 0.95271 1.21039 1.00713 0.99990 0.91309 1.20840 1.01192 0.93532 0.98644 1.20734 1.04876 0.94507 0.86374 1.98342 1.94781 1.80557 1.31962 1.20965 1.01300 1.00598 0.90262 1.19995 0.96119 0.93807 0.94989 1.20950 0.98642 0.97427 0.86750 0.93358 0.94193 0.95578 0.88852 0.94989 0.92808 0.94413 0.90890 0.90155 0.91169 0.85587 0.85590 0.85198 0.89850 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.80 37.16 0.36 -2.38 16 2 C -0.11 -2.54 5.15 -26.73 -0.14 -2.67 16 3 C 0.21 4.98 1.71 -68.87 -0.12 4.86 16 4 H 0.04 1.08 7.91 -51.93 -0.41 0.67 16 5 C -0.55 -13.93 7.22 -34.44 -0.25 -14.18 16 6 H 0.06 1.46 5.81 -52.49 -0.31 1.16 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -23.98 11.28 55.43 0.63 -23.35 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.53 -10.52 4.09 -229.60 -0.94 -11.46 16 14 C 0.06 1.07 5.13 -3.74 -0.02 1.05 16 15 C -0.08 -1.13 5.94 -27.92 -0.17 -1.30 16 16 C -0.06 -0.94 5.77 -104.59 -0.60 -1.54 16 17 C -0.11 -1.44 9.65 -39.50 -0.38 -1.83 16 18 C -0.12 -1.56 9.84 -39.62 -0.39 -1.95 16 19 C -0.04 -0.53 6.31 -39.57 -0.25 -0.78 16 20 Cl -0.09 -1.06 28.96 -51.86 -1.50 -2.56 16 21 C -0.11 -1.69 9.43 -39.45 -0.37 -2.06 16 22 C -0.05 -0.80 5.79 -104.63 -0.61 -1.41 16 23 C 0.09 1.70 4.61 -5.16 -0.02 1.68 16 24 H 0.05 0.93 7.75 -51.93 -0.40 0.52 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 2.39 5.94 -51.93 -0.31 2.08 16 28 H 0.03 0.71 6.41 -51.93 -0.33 0.38 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.04 0.73 7.46 -51.93 -0.39 0.35 16 31 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.08 1.59 6.52 -51.93 -0.34 1.25 16 38 H 0.07 1.37 5.94 -51.93 -0.31 1.06 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -26.11 313.52 -10.46 -36.57 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.30 Total: 1.31 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.05 Total: -20.74 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.31 Total: -34.81 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.11 -10.46 -36.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.610 kcal (2) G-P(sol) polarization free energy of solvation -26.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds