Wall clock time and date at job start Tue Mar 31 2020 00:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 N 1.46895 * 109.47363 * 65.00439 * 3 2 1 14 14 C 1.47157 * 111.00347 * 189.06037 * 13 3 2 15 15 C 1.52898 * 108.50011 * 165.30988 * 14 13 3 16 16 C 1.50731 * 109.94359 * 50.45820 * 15 14 13 17 17 C 1.38690 * 118.46489 * 163.22242 * 16 15 14 18 18 C 1.38012 * 120.36126 * 179.59638 * 17 16 15 19 19 C 1.38371 * 119.81449 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.07791 * 180.13985 * 19 18 17 21 21 C 1.38132 * 119.84583 * 0.09033 * 19 18 17 22 22 C 1.37840 * 121.65884 * 342.97483 * 16 15 14 23 23 C 1.46627 * 111.00117 * 66.04305 * 13 3 2 24 24 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 25 25 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 26 26 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 28 28 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.08996 * 109.63057 * 285.02173 * 14 13 3 31 31 H 1.08996 * 109.62893 * 45.61031 * 14 13 3 32 32 H 1.08993 * 109.39527 * 290.30761 * 15 14 13 33 33 H 1.08997 * 109.30827 * 170.54423 * 15 14 13 34 34 H 1.08001 * 119.81587 * 359.57234 * 17 16 15 35 35 H 1.08000 * 120.08778 * 180.02562 * 18 17 16 36 36 H 1.07991 * 119.81878 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.26722 * 296.17588 * 23 13 3 38 38 H 1.08994 * 109.26963 * 55.64873 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 7 1.6515 2.0993 1.2552 14 6 1.9337 3.5426 1.2046 15 6 1.1900 4.2230 2.3543 16 6 1.4781 3.5062 3.6486 17 6 1.1963 4.1561 4.8410 18 6 1.4370 3.5331 6.0487 19 6 1.9617 2.2529 6.0700 20 17 2.2636 1.4614 7.5852 21 6 2.2437 1.6057 4.8826 22 6 2.0044 2.2324 3.6685 23 6 2.3330 1.4883 2.4008 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8295 -0.0694 -2.9455 30 1 3.0054 3.7102 1.3115 31 1 1.5895 3.9499 0.2539 32 1 0.1183 4.1977 2.1573 33 1 1.5191 5.2591 2.4334 34 1 0.7868 5.1553 4.8242 35 1 1.2155 4.0431 6.9746 36 1 2.6536 0.6068 4.8997 37 1 2.0120 0.4513 2.4990 38 1 3.4100 1.5169 2.2357 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:11 Heat of formation + Delta-G solvation = -2.214740 kcal Electronic energy + Delta-G solvation = -19850.527984 eV Core-core repulsion = 16910.378196 eV Total energy + Delta-G solvation = -2940.149788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.09434 -38.80381 -37.38838 -35.41274 -33.79952 -33.13253 -31.75683 -29.93017 -28.41750 -26.05456 -24.73870 -23.70366 -23.20823 -21.35568 -20.37034 -18.39714 -17.81089 -17.00655 -16.52424 -16.25217 -15.92153 -15.53999 -15.08804 -14.84611 -14.46637 -14.31539 -13.95723 -13.94979 -13.32797 -13.21051 -13.11144 -13.03707 -12.88052 -12.68098 -12.49674 -12.18673 -12.03939 -11.85881 -11.73801 -11.59067 -11.44234 -11.21867 -10.96005 -10.43552 -9.81054 -9.35750 -8.93154 -8.04007 -6.26130 0.23661 0.35424 1.17473 1.35848 1.38898 1.46327 2.39227 2.66929 3.14765 3.36937 3.80952 3.85753 3.99008 4.21793 4.33158 4.43383 4.54490 4.63478 4.67569 4.74590 4.82547 4.86713 4.91632 4.95138 5.02767 5.04909 5.25686 5.28967 5.29342 5.36637 5.43387 5.49864 5.62125 5.65631 5.78945 5.92110 6.07474 6.17806 6.38363 6.60988 6.94428 7.44704 8.91093 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019404 B = 0.004968 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.673647 B = 5634.904347 C = 5948.841055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.220 3.780 4 H 0.011 0.989 5 C -0.553 4.553 6 H 0.049 0.951 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.057 3.943 15 C -0.067 4.067 16 C -0.074 4.074 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.045 4.045 20 Cl -0.074 7.074 21 C -0.121 4.121 22 C -0.073 4.073 23 C 0.101 3.899 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.129 0.871 37 H 0.073 0.927 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.897 6.606 14.494 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 C 0.113 3.887 4 H 0.029 0.971 5 C -0.592 4.592 6 H 0.067 0.933 7 C -0.174 4.174 8 N -0.547 5.547 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.199 1.199 13 N -0.247 5.247 14 C -0.071 4.071 15 C -0.104 4.104 16 C -0.074 4.074 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.071 4.071 20 Cl -0.045 7.045 21 C -0.140 4.140 22 C -0.073 4.073 23 C -0.027 4.027 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.179 0.821 35 H 0.173 0.827 36 H 0.147 0.853 37 H 0.091 0.909 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.378 6.376 14.498 16.726 hybrid contribution 2.210 -0.505 -0.588 2.342 sum -3.168 5.872 13.910 15.427 Atomic orbital electron populations 1.21562 0.96305 0.99758 1.00676 1.21448 0.94504 0.98257 1.00319 1.19096 0.91844 0.91618 0.86180 0.97113 1.21947 0.94049 1.37769 1.05390 0.93276 1.25538 1.01429 0.94896 0.95545 1.69988 1.36143 1.38702 1.09860 0.85815 0.81864 0.78291 0.77211 1.20404 1.20807 1.19946 1.62733 1.55826 1.02727 1.03403 1.21980 0.97228 0.89222 0.98719 1.20595 1.01527 0.98604 0.89711 1.19960 0.97470 0.93491 0.96506 1.21346 0.99473 1.01131 0.90119 1.21228 0.99372 0.92806 0.99886 1.20855 1.04754 0.95139 0.86370 1.98347 1.94717 1.80515 1.30915 1.20972 1.01669 1.00820 0.90511 1.19789 0.98702 0.94860 0.93994 1.20741 0.96721 0.97493 0.87790 0.92640 0.94610 0.93715 0.91779 0.95248 0.92888 0.96451 0.91535 0.89143 0.88210 0.82109 0.82682 0.85316 0.90887 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.80 71.98 0.71 -4.27 16 2 C -0.11 -5.01 5.15 30.59 0.16 -4.85 16 3 C 0.22 10.65 1.71 44.17 0.08 10.73 16 4 H 0.01 0.59 7.91 -2.38 -0.02 0.57 16 5 C -0.55 -29.16 7.22 25.60 0.18 -28.97 16 6 H 0.05 2.63 5.81 -2.91 -0.02 2.61 16 7 C 0.03 1.41 5.29 84.66 0.45 1.86 16 8 N -0.91 -50.79 11.28 21.45 0.24 -50.55 16 9 Si 0.94 43.02 29.54 68.60 2.03 45.04 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.52 -21.37 4.09 -880.34 -3.60 -24.97 16 14 C 0.06 2.07 5.13 86.22 0.44 2.52 16 15 C -0.07 -1.81 5.94 29.82 0.18 -1.64 16 16 C -0.07 -2.07 5.77 -19.84 -0.11 -2.19 16 17 C -0.10 -2.23 9.65 22.32 0.22 -2.01 16 18 C -0.11 -2.45 9.84 22.25 0.22 -2.23 16 19 C -0.04 -1.13 6.31 22.28 0.14 -0.99 16 20 Cl -0.07 -1.68 28.96 -2.72 -0.08 -1.75 16 21 C -0.12 -3.53 9.43 22.36 0.21 -3.32 16 22 C -0.07 -2.37 5.79 -19.87 -0.12 -2.48 16 23 C 0.10 3.92 4.61 85.59 0.39 4.31 16 24 H 0.05 2.10 7.75 -2.38 -0.02 2.08 16 25 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 3.40 5.94 -2.38 -0.01 3.39 16 28 H 0.03 1.35 6.41 -2.39 -0.02 1.34 16 29 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 30 H 0.02 0.69 7.46 -2.39 -0.02 0.67 16 31 H 0.07 2.46 7.87 -2.39 -0.02 2.44 16 32 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.07 2.90 6.52 -2.39 -0.02 2.89 16 38 H 0.04 1.63 5.94 -2.39 -0.01 1.61 16 Total: -1.00 -57.48 313.52 2.78 -54.70 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.05 Total: 11.07 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 3.14 Total: -33.54 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -3.36 Total: -75.52 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.75 kcal Total: -57.48 2.78 -54.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.487 kcal (2) G-P(sol) polarization free energy of solvation -57.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds