Wall clock time and date at job start Tue Mar 31 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 H 1.09003 * 109.47559 * 178.44529 * 3 2 1 5 5 C 1.50700 * 109.47511 * 298.44783 * 3 2 1 6 6 H 1.08000 * 120.00201 * 119.99595 * 5 3 2 7 7 C 1.37880 * 119.99718 * 300.00068 * 5 3 2 8 8 N 1.31514 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00102 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46962 * 59.99403 * 9 7 5 11 11 H 1.48495 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46669 * 299.99548 * 9 7 5 13 13 N 1.46909 * 109.46866 * 58.44330 * 3 2 1 14 14 C 1.47161 * 110.99930 * 179.52015 * 13 3 2 15 15 C 1.52895 * 108.49811 * 165.31668 * 14 13 3 16 16 C 1.50719 * 109.94863 * 50.45208 * 15 14 13 17 17 C 1.38654 * 118.47244 * 163.22612 * 16 15 14 18 18 C 1.38151 * 120.33624 * 179.59832 * 17 16 15 19 19 Cl 1.73601 * 120.09962 * 180.02562 * 18 17 16 20 20 C 1.38375 * 119.80099 * 359.97438 * 18 17 16 21 21 C 1.37998 * 119.85354 * 0.09483 * 20 18 17 22 22 C 1.37846 * 121.65759 * 342.98562 * 16 15 14 23 23 C 1.46629 * 110.99833 * 56.51029 * 13 3 2 24 24 H 1.09000 * 109.47691 * 55.49938 * 1 2 3 25 25 H 1.09006 * 109.46935 * 295.49339 * 1 2 3 26 26 H 1.09003 * 109.47161 * 175.49877 * 1 2 3 27 27 H 1.08995 * 109.47315 * 120.00071 * 2 1 3 28 28 H 1.09004 * 109.46979 * 240.00621 * 2 1 3 29 29 H 0.96996 * 120.00276 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.63222 * 285.02332 * 14 13 3 31 31 H 1.09004 * 109.62779 * 45.61671 * 14 13 3 32 32 H 1.09006 * 109.39336 * 290.30374 * 15 14 13 33 33 H 1.09000 * 109.31051 * 170.54559 * 15 14 13 34 34 H 1.08000 * 119.83340 * 359.62247 * 17 16 15 35 35 H 1.07998 * 120.07327 * 180.02562 * 20 18 17 36 36 H 1.07996 * 119.79614 * 179.97438 * 21 20 18 37 37 H 1.08999 * 109.26691 * 296.17920 * 23 13 3 38 38 H 1.09000 * 109.27177 * 55.68376 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0279 5 6 1.5693 2.1418 -1.2492 6 1 0.9461 3.0207 -1.1740 7 6 1.9343 1.6595 -2.4883 8 7 2.6934 0.5895 -2.5799 9 14 1.3515 2.5266 -4.0368 10 1 1.8470 3.9265 -4.0365 11 1 1.8777 1.8160 -5.2299 12 1 -0.1330 2.5270 -4.0750 13 7 1.5197 2.1458 1.1803 14 6 1.9999 3.5363 1.2198 15 6 1.1567 4.3120 2.2322 16 6 1.1013 3.5613 3.5379 17 6 0.6959 4.2426 4.6754 18 6 0.6232 3.5900 5.8909 19 17 0.1141 4.4489 7.3111 20 6 0.9563 2.2495 5.9727 21 6 1.3612 1.5719 4.8408 22 6 1.4370 2.2269 3.6200 23 6 1.8893 1.4455 2.4144 24 1 -0.3634 0.5821 -0.8469 25 1 -0.3633 0.4423 0.9277 26 1 -0.3633 -1.0245 -0.0807 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 2.9499 0.2500 -3.4516 30 1 3.0462 3.5538 1.5246 31 1 1.8952 3.9880 0.2333 32 1 0.1462 4.4355 1.8425 33 1 1.6033 5.2926 2.3971 34 1 0.4352 5.2887 4.6109 35 1 0.9006 1.7349 6.9206 36 1 1.6214 0.5258 4.9058 37 1 1.4180 0.4627 2.4252 38 1 2.9721 1.3255 2.4495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:14 Heat of formation + Delta-G solvation = 12.673643 kcal Electronic energy + Delta-G solvation = -19776.166391 eV Core-core repulsion = 16836.662211 eV Total energy + Delta-G solvation = -2939.504180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.91354 -37.40890 -36.30399 -33.95988 -32.48173 -31.25567 -30.31490 -28.73059 -26.69470 -24.09279 -23.62968 -22.46265 -22.02100 -19.74414 -18.71051 -16.75656 -16.22256 -15.72373 -15.07128 -14.87765 -14.37360 -14.20008 -13.70383 -13.52914 -13.03710 -12.99363 -12.86715 -12.44060 -12.01426 -11.75405 -11.66989 -11.60276 -11.11950 -10.97790 -10.87201 -10.79694 -10.63991 -10.47173 -10.09410 -10.00949 -9.71869 -9.41701 -8.89034 -8.71983 -8.44526 -8.29883 -7.24848 -6.04089 -4.07966 1.27028 1.38203 2.14641 3.29751 3.34940 3.37368 3.70693 4.36910 4.79090 4.86171 4.93482 5.08712 5.27750 5.32173 5.43980 5.55932 5.77182 5.88438 5.92955 6.04072 6.09349 6.16188 6.27732 6.34167 6.45703 6.52640 6.58540 6.65940 6.74104 6.77893 6.96436 7.08309 7.25355 7.36639 7.61329 7.70546 7.79475 8.10277 8.29256 8.52777 8.96559 9.56086 11.02299 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.004199 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.902120 B = 6667.263732 C = 7156.685535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C 0.216 3.784 4 H -0.001 1.001 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.056 3.944 15 C -0.078 4.078 16 C -0.050 4.050 17 C -0.115 4.115 18 C -0.041 4.041 19 Cl -0.085 7.085 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.058 4.058 23 C 0.086 3.914 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.093 0.907 29 H 0.261 0.739 30 H 0.023 0.977 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.408 4.058 14.032 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.537 4.537 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.115 4.115 16 C -0.050 4.050 17 C -0.133 4.133 18 C -0.067 4.067 19 Cl -0.056 7.056 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.059 4.059 23 C -0.042 4.042 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.877 4.013 13.956 14.804 hybrid contribution 0.531 0.400 -0.548 0.862 sum -2.346 4.414 13.408 14.309 Atomic orbital electron populations 1.21479 0.97197 0.97689 1.01539 1.21589 0.95233 0.98108 1.00201 1.19313 0.92614 0.90868 0.86140 0.98353 1.20984 1.31166 1.11996 0.89510 0.91931 1.24890 0.95134 0.95060 0.98921 1.69858 1.36316 1.22594 1.24333 0.86628 0.79140 0.79584 0.82473 1.20369 1.21425 1.20216 1.62444 1.59357 1.01292 1.01574 1.22057 0.94736 0.90719 0.99683 1.20656 1.02098 0.97288 0.91462 1.19687 0.96985 0.93446 0.94901 1.20988 1.01379 1.00333 0.90649 1.20762 1.04882 0.93196 0.87905 1.98342 1.89808 1.77421 1.40070 1.20858 1.01141 0.92482 0.99275 1.21031 0.99997 1.00106 0.91540 1.19997 0.97220 0.93560 0.95120 1.21028 0.97670 0.97407 0.88136 0.92107 0.94149 0.96525 0.96857 0.88850 0.92905 0.95915 0.88591 0.89722 0.91092 0.85375 0.85414 0.85296 0.89342 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.47 37.16 0.35 -2.25 16 2 C -0.11 -2.58 4.98 -26.73 -0.13 -2.72 16 3 C 0.22 5.11 1.74 -68.86 -0.12 4.99 16 4 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 5 C -0.50 -12.72 6.47 -34.44 -0.22 -12.95 16 6 H 0.06 1.60 6.84 -52.49 -0.36 1.24 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -24.39 11.31 55.43 0.63 -23.76 16 9 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.52 -10.49 3.79 -229.59 -0.87 -11.36 16 14 C 0.06 1.03 5.39 -3.74 -0.02 1.01 16 15 C -0.08 -1.17 5.94 -27.93 -0.17 -1.34 16 16 C -0.05 -0.75 5.77 -104.60 -0.60 -1.35 16 17 C -0.11 -1.55 9.44 -39.46 -0.37 -1.92 16 18 C -0.04 -0.53 6.32 -39.56 -0.25 -0.78 16 19 Cl -0.09 -0.98 28.96 -51.86 -1.50 -2.49 16 20 C -0.12 -1.48 9.84 -39.62 -0.39 -1.87 16 21 C -0.11 -1.44 9.65 -39.48 -0.38 -1.82 16 22 C -0.06 -0.91 5.79 -104.62 -0.61 -1.52 16 23 C 0.09 1.51 4.56 -5.16 -0.02 1.48 16 24 H 0.06 1.42 7.12 -51.93 -0.37 1.05 16 25 H 0.04 0.82 7.37 -51.93 -0.38 0.44 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.01 0.27 6.53 -51.93 -0.34 -0.07 16 28 H 0.09 2.40 6.03 -51.93 -0.31 2.09 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 31 H 0.10 1.89 6.19 -51.93 -0.32 1.57 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.09 1.55 6.17 -51.93 -0.32 1.22 16 38 H 0.04 0.70 8.13 -51.93 -0.42 0.27 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -26.41 313.06 -10.42 -36.83 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.34 Total: 0.02 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -3.03 Total: -19.51 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.24 Total: -35.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.41 -10.42 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.502 kcal (2) G-P(sol) polarization free energy of solvation -26.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds