Wall clock time and date at job start Tue Mar 31 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47070 * 2 1 4 4 H 1.09003 * 109.47559 * 178.44529 * 3 2 1 5 5 C 1.50700 * 109.47511 * 298.44783 * 3 2 1 6 6 H 1.08000 * 120.00201 * 119.99595 * 5 3 2 7 7 C 1.37880 * 119.99718 * 300.00068 * 5 3 2 8 8 N 1.31514 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00102 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46962 * 59.99403 * 9 7 5 11 11 H 1.48495 * 109.47130 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46669 * 299.99548 * 9 7 5 13 13 N 1.46909 * 109.46866 * 58.44330 * 3 2 1 14 14 C 1.47161 * 110.99930 * 179.52015 * 13 3 2 15 15 C 1.52895 * 108.49811 * 165.31668 * 14 13 3 16 16 C 1.50719 * 109.94863 * 50.45208 * 15 14 13 17 17 C 1.38654 * 118.47244 * 163.22612 * 16 15 14 18 18 C 1.38151 * 120.33624 * 179.59832 * 17 16 15 19 19 Cl 1.73601 * 120.09962 * 180.02562 * 18 17 16 20 20 C 1.38375 * 119.80099 * 359.97438 * 18 17 16 21 21 C 1.37998 * 119.85354 * 0.09483 * 20 18 17 22 22 C 1.37846 * 121.65759 * 342.98562 * 16 15 14 23 23 C 1.46629 * 110.99833 * 56.51029 * 13 3 2 24 24 H 1.09000 * 109.47691 * 55.49938 * 1 2 3 25 25 H 1.09006 * 109.46935 * 295.49339 * 1 2 3 26 26 H 1.09003 * 109.47161 * 175.49877 * 1 2 3 27 27 H 1.08995 * 109.47315 * 120.00071 * 2 1 3 28 28 H 1.09004 * 109.46979 * 240.00621 * 2 1 3 29 29 H 0.96996 * 120.00276 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.63222 * 285.02332 * 14 13 3 31 31 H 1.09004 * 109.62779 * 45.61671 * 14 13 3 32 32 H 1.09006 * 109.39336 * 290.30374 * 15 14 13 33 33 H 1.09000 * 109.31051 * 170.54559 * 15 14 13 34 34 H 1.08000 * 119.83340 * 359.62247 * 17 16 15 35 35 H 1.07998 * 120.07327 * 180.02562 * 20 18 17 36 36 H 1.07996 * 119.79614 * 179.97438 * 21 20 18 37 37 H 1.08999 * 109.26691 * 296.17920 * 23 13 3 38 38 H 1.09000 * 109.27177 * 55.68376 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0279 5 6 1.5693 2.1418 -1.2492 6 1 0.9461 3.0207 -1.1740 7 6 1.9343 1.6595 -2.4883 8 7 2.6934 0.5895 -2.5799 9 14 1.3515 2.5266 -4.0368 10 1 1.8470 3.9265 -4.0365 11 1 1.8777 1.8160 -5.2299 12 1 -0.1330 2.5270 -4.0750 13 7 1.5197 2.1458 1.1803 14 6 1.9999 3.5363 1.2198 15 6 1.1567 4.3120 2.2322 16 6 1.1013 3.5613 3.5379 17 6 0.6959 4.2426 4.6754 18 6 0.6232 3.5900 5.8909 19 17 0.1141 4.4489 7.3111 20 6 0.9563 2.2495 5.9727 21 6 1.3612 1.5719 4.8408 22 6 1.4370 2.2269 3.6200 23 6 1.8893 1.4455 2.4144 24 1 -0.3634 0.5821 -0.8469 25 1 -0.3633 0.4423 0.9277 26 1 -0.3633 -1.0245 -0.0807 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 2.9499 0.2500 -3.4516 30 1 3.0462 3.5538 1.5246 31 1 1.8952 3.9880 0.2333 32 1 0.1462 4.4355 1.8425 33 1 1.6033 5.2926 2.3971 34 1 0.4352 5.2887 4.6109 35 1 0.9006 1.7349 6.9206 36 1 1.6214 0.5258 4.9058 37 1 1.4180 0.4627 2.4252 38 1 2.9721 1.3255 2.4495 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:14 Heat of formation + Delta-G solvation = 0.463558 kcal Electronic energy + Delta-G solvation = -19776.695860 eV Core-core repulsion = 16836.662211 eV Total energy + Delta-G solvation = -2940.033649 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.11195 -38.81457 -37.37997 -35.53943 -33.95084 -32.84828 -31.70758 -29.99414 -28.47552 -25.75520 -25.09861 -23.83943 -23.18752 -21.33445 -20.20752 -18.24876 -17.76229 -17.09156 -16.52662 -16.24050 -15.95249 -15.50687 -15.20350 -14.92933 -14.48062 -14.23672 -14.14691 -14.05995 -13.55755 -13.11774 -12.94970 -12.93283 -12.76449 -12.68987 -12.38880 -12.17834 -12.06227 -11.85557 -11.79431 -11.55440 -11.47273 -11.13217 -10.76595 -10.43081 -9.77743 -9.42803 -8.89931 -8.05818 -6.15237 0.19537 0.34839 1.16684 1.45213 1.46321 1.53106 2.45182 2.63830 3.21563 3.33850 3.75029 3.83514 3.97101 4.19068 4.30998 4.37878 4.50590 4.56190 4.60251 4.70883 4.77289 4.80326 4.87324 4.91693 4.98911 5.10979 5.21554 5.26938 5.28367 5.31634 5.45295 5.52578 5.62748 5.76563 5.79732 5.87663 5.90972 6.33650 6.42408 6.74271 6.96553 7.52189 8.99586 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033935 B = 0.004199 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.902120 B = 6667.263732 C = 7156.685535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C 0.222 3.778 4 H -0.041 1.041 5 C -0.502 4.502 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.525 5.525 14 C 0.056 3.944 15 C -0.068 4.068 16 C -0.064 4.064 17 C -0.115 4.115 18 C -0.044 4.044 19 Cl -0.070 7.070 20 C -0.114 4.114 21 C -0.106 4.106 22 C -0.080 4.080 23 C 0.090 3.910 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.063 0.937 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.088 0.912 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 4.789 15.909 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C 0.116 3.884 4 H -0.024 1.024 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.105 4.105 16 C -0.064 4.064 17 C -0.133 4.133 18 C -0.070 4.070 19 Cl -0.041 7.041 20 C -0.133 4.133 21 C -0.124 4.124 22 C -0.081 4.081 23 C -0.038 4.038 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.166 0.834 37 H 0.106 0.894 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.043 4.760 15.852 17.038 hybrid contribution 0.909 0.193 -1.013 1.375 sum -3.135 4.953 14.839 15.955 Atomic orbital electron populations 1.21321 0.95743 0.98562 1.00899 1.21458 0.96369 0.97380 0.99494 1.19084 0.90203 0.91785 0.87354 1.02396 1.21206 1.30598 1.11785 0.90505 0.92333 1.25580 0.95376 0.95685 1.01618 1.69996 1.37462 1.23821 1.24671 0.85722 0.78705 0.78714 0.79166 1.19774 1.21429 1.19814 1.62389 1.59050 1.02009 1.01495 1.22052 0.95191 0.90161 0.99819 1.20557 1.01386 0.97892 0.90667 1.19702 0.98007 0.93442 0.95298 1.21096 1.00888 1.01098 0.90231 1.20926 1.04192 0.93602 0.88307 1.98353 1.89580 1.77140 1.39072 1.21144 0.99838 0.92369 0.99930 1.21213 0.99314 1.01044 0.90854 1.19903 0.99192 0.93957 0.95002 1.20966 0.97156 0.97656 0.87986 0.94468 0.93166 0.94562 0.95199 0.91849 0.93140 0.96599 0.90601 0.89861 0.88587 0.83711 0.82916 0.83448 0.89377 0.95384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.57 9.47 71.98 0.68 -3.89 16 2 C -0.11 -5.05 4.98 30.59 0.15 -4.90 16 3 C 0.22 10.86 1.74 44.17 0.08 10.93 16 4 H -0.04 -2.31 8.14 -2.39 -0.02 -2.32 16 5 C -0.50 -26.34 6.47 25.60 0.17 -26.18 16 6 H 0.06 3.06 6.84 -2.91 -0.02 3.04 16 7 C 0.02 0.86 5.30 84.66 0.45 1.30 16 8 N -0.92 -51.73 11.31 21.45 0.24 -51.49 16 9 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.53 -21.42 3.79 -880.29 -3.34 -24.76 16 14 C 0.06 2.09 5.39 86.22 0.46 2.55 16 15 C -0.07 -1.97 5.94 29.82 0.18 -1.80 16 16 C -0.06 -1.83 5.77 -19.85 -0.11 -1.94 16 17 C -0.11 -2.78 9.44 22.35 0.21 -2.57 16 18 C -0.04 -1.00 6.32 22.28 0.14 -0.86 16 19 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 20 C -0.11 -2.47 9.84 22.25 0.22 -2.25 16 21 C -0.11 -2.56 9.65 22.33 0.22 -2.35 16 22 C -0.08 -2.39 5.79 -19.86 -0.12 -2.50 16 23 C 0.09 3.17 4.56 85.58 0.39 3.56 16 24 H 0.04 1.72 7.12 -2.39 -0.02 1.71 16 25 H 0.05 2.00 7.37 -2.38 -0.02 1.98 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.03 1.25 6.53 -2.39 -0.02 1.24 16 28 H 0.06 3.36 6.03 -2.38 -0.01 3.34 16 29 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 30 H 0.02 0.60 8.05 -2.39 -0.02 0.58 16 31 H 0.08 3.09 6.19 -2.38 -0.01 3.08 16 32 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 36 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.09 3.03 6.17 -2.39 -0.01 3.01 16 38 H 0.03 1.03 8.13 -2.39 -0.02 1.02 16 Total: -1.00 -57.28 313.06 3.01 -54.27 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.05 Total: 9.62 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 3.11 Total: -30.89 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -3.10 Total: -76.25 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -57.28 3.01 -54.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.733 kcal (2) G-P(sol) polarization free energy of solvation -57.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds