Wall clock time and date at job start Tue Mar 31 2020 00:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46531 * 2 1 4 4 H 1.08994 * 109.47275 * 303.66973 * 3 2 1 5 5 C 1.50707 * 109.46806 * 183.67509 * 3 2 1 6 6 H 1.07997 * 119.99924 * 305.07933 * 5 3 2 7 7 C 1.37882 * 120.00044 * 125.07582 * 5 3 2 8 8 N 1.31512 * 119.99875 * 172.88081 * 7 5 3 9 9 Si 1.86801 * 119.99662 * 352.88279 * 7 5 3 10 10 H 1.48500 * 109.47129 * 84.91594 * 9 7 5 11 11 H 1.48500 * 109.46756 * 204.91042 * 9 7 5 12 12 H 1.48493 * 109.47346 * 324.90948 * 9 7 5 13 13 N 1.46896 * 109.47078 * 63.67813 * 3 2 1 14 14 C 1.47171 * 110.99850 * 189.99412 * 13 3 2 15 15 C 1.52896 * 108.48916 * 165.28913 * 14 13 3 16 16 C 1.50720 * 109.94765 * 50.40887 * 15 14 13 17 17 C 1.38798 * 118.48308 * 163.19658 * 16 15 14 18 18 Cl 1.73597 * 119.83966 * 359.83334 * 17 16 15 19 19 C 1.38151 * 120.31949 * 179.81844 * 17 16 15 20 20 C 1.38241 * 119.81028 * 359.97438 * 19 17 16 21 21 C 1.38016 * 119.88560 * 0.09469 * 20 19 17 22 22 C 1.37808 * 121.67194 * 343.16670 * 16 15 14 23 23 C 1.46632 * 111.00249 * 67.00400 * 13 3 2 24 24 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47299 * 299.99654 * 1 2 3 26 26 H 1.08996 * 109.47785 * 60.00037 * 1 2 3 27 27 H 1.08994 * 109.47073 * 240.00357 * 2 1 3 28 28 H 1.08997 * 109.47376 * 119.99615 * 2 1 3 29 29 H 0.97004 * 119.99644 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.62971 * 45.59426 * 14 13 3 31 31 H 1.08997 * 109.79845 * 285.08877 * 14 13 3 32 32 H 1.09004 * 109.39420 * 170.55539 * 15 14 13 33 33 H 1.09001 * 109.39692 * 290.26627 * 15 14 13 34 34 H 1.08002 * 120.09005 * 180.02562 * 19 17 16 35 35 H 1.07997 * 120.05542 * 180.11565 * 20 19 17 36 36 H 1.08002 * 119.79526 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.27005 * 296.15582 * 23 13 3 38 38 H 1.08997 * 109.27061 * 55.65949 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6238 1.9750 -0.8552 5 6 3.5442 1.4437 -0.0911 6 1 4.1291 0.8903 0.6286 7 6 4.1737 2.1510 -1.0933 8 7 5.4836 2.2683 -1.0924 9 14 3.1659 2.9429 -2.4523 10 1 2.6899 4.2758 -2.0030 11 1 4.0081 3.1010 -3.6651 12 1 1.9986 2.0813 -2.7691 13 7 1.6240 2.1089 1.2414 14 6 1.8869 3.5555 1.1770 15 6 1.1166 4.2390 2.3072 16 6 1.3943 3.5414 3.6140 17 6 1.0861 4.2016 4.7954 18 17 0.4012 5.7958 4.7405 19 6 1.3214 3.5961 6.0146 20 6 1.8661 2.3262 6.0575 21 6 2.1740 1.6700 4.8830 22 6 1.9407 2.2770 3.6575 23 6 2.2976 1.5219 2.4040 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 5.9264 2.7657 -1.7977 30 1 1.5512 3.9463 0.2165 31 1 2.9541 3.7425 1.2958 32 1 1.4289 5.2809 2.3796 33 1 0.0484 4.1969 2.0944 34 1 1.0797 4.1131 6.9315 35 1 2.0499 1.8484 7.0084 36 1 2.5991 0.6778 4.9182 37 1 1.9899 0.4816 2.5107 38 1 3.3764 1.5642 2.2540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:25 Heat of formation + Delta-G solvation = 10.614635 kcal Electronic energy + Delta-G solvation = -20126.037167 eV Core-core repulsion = 17186.443702 eV Total energy + Delta-G solvation = -2939.593465 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -39.83113 -37.34637 -36.24592 -33.89782 -32.21957 -31.71776 -30.53985 -28.67355 -27.13563 -24.32738 -23.32646 -22.34502 -21.88861 -19.84382 -18.56763 -17.19450 -16.54847 -15.52551 -15.13264 -14.84458 -14.51532 -14.23138 -13.64441 -13.35050 -13.09724 -12.97167 -12.70647 -12.38262 -12.17737 -11.90965 -11.74794 -11.54310 -11.45385 -11.12537 -10.91980 -10.90785 -10.76592 -10.36385 -10.20948 -9.98839 -9.81085 -9.69691 -9.20132 -8.66623 -8.43707 -8.33960 -7.17518 -6.21575 -4.24058 1.36200 1.51542 2.30273 3.18845 3.28970 3.29912 3.82564 4.29389 4.78048 4.93670 4.96710 5.19021 5.25123 5.42564 5.52441 5.67997 5.80467 5.93287 5.97784 6.01606 6.06609 6.16641 6.23408 6.30719 6.36023 6.49223 6.53542 6.59521 6.69379 6.70972 6.81684 6.82594 6.93882 7.04934 7.13878 7.21965 7.55464 7.97064 8.18248 8.40206 8.82430 9.42598 10.90888 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.005967 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.751965 B = 4691.705424 C = 5084.731004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C 0.168 3.832 4 H 0.048 0.952 5 C -0.543 4.543 6 H 0.076 0.924 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.526 5.526 14 C 0.059 3.941 15 C -0.078 4.078 16 C -0.056 4.056 17 C -0.038 4.038 18 Cl -0.081 7.081 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.047 4.047 23 C 0.090 3.910 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 1.883 10.589 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C 0.063 3.937 4 H 0.066 0.934 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.124 4.124 8 N -0.528 5.528 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.250 5.250 14 C -0.070 4.070 15 C -0.115 4.115 16 C -0.057 4.057 17 C -0.064 4.064 18 Cl -0.052 7.052 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.048 4.048 23 C -0.038 4.038 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.360 2.027 10.512 14.220 hybrid contribution 0.499 0.744 -0.817 1.212 sum -8.861 2.771 9.695 13.423 Atomic orbital electron populations 1.21756 0.97619 0.99247 1.01574 1.21568 0.93645 0.98278 1.00736 1.19834 0.94399 0.91376 0.88127 0.93382 1.21503 0.90440 1.31674 1.14583 0.90631 1.25098 0.94688 0.95144 0.97454 1.69920 1.08347 1.41027 1.33544 0.86978 0.80566 0.80306 0.82334 1.19866 1.21507 1.18917 1.63019 1.56034 1.02088 1.03880 1.21883 0.98699 0.89662 0.96731 1.20658 1.01431 0.98174 0.91258 1.19516 0.98122 0.94073 0.93958 1.20915 1.03315 0.87323 0.94845 1.98331 1.83563 1.24509 1.98833 1.20844 1.01584 0.95893 0.96011 1.20908 0.99797 0.94395 0.98312 1.21169 1.00302 1.00395 0.91745 1.19979 0.95778 0.93150 0.95873 1.20908 0.99353 0.96796 0.86708 0.94850 0.92143 0.94068 0.92682 0.93131 0.92526 0.91630 0.93268 0.90797 0.90189 0.85635 0.85620 0.85641 0.90248 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.79 37.16 0.36 -2.09 16 2 C -0.10 -2.04 5.30 -26.73 -0.14 -2.18 16 3 C 0.17 3.71 1.70 -68.86 -0.12 3.59 16 4 H 0.05 1.11 4.43 -51.93 -0.23 0.88 16 5 C -0.54 -14.01 7.12 -34.43 -0.25 -14.26 16 6 H 0.08 2.13 7.02 -52.49 -0.37 1.77 16 7 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 9 Si 0.87 20.64 26.92 -169.99 -4.58 16.07 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -6.07 6.68 56.52 0.38 -5.69 16 13 N -0.53 -10.49 4.03 -229.59 -0.93 -11.42 16 14 C 0.06 1.16 5.15 -3.73 -0.02 1.14 16 15 C -0.08 -1.30 5.26 -27.93 -0.15 -1.45 16 16 C -0.06 -0.92 5.77 -104.56 -0.60 -1.53 16 17 C -0.04 -0.56 6.31 -39.41 -0.25 -0.81 16 18 Cl -0.08 -1.09 27.39 -51.86 -1.42 -2.51 16 19 C -0.12 -1.62 9.82 -39.61 -0.39 -2.01 16 20 C -0.12 -1.45 10.04 -39.66 -0.40 -1.84 16 21 C -0.12 -1.67 9.65 -39.48 -0.38 -2.05 16 22 C -0.05 -0.79 5.79 -104.63 -0.61 -1.40 16 23 C 0.09 1.69 4.60 -5.16 -0.02 1.67 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.96 6.50 -51.93 -0.34 0.63 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.31 7.74 -51.93 -0.40 0.91 16 31 H 0.05 1.09 7.81 -51.93 -0.41 0.69 16 32 H 0.07 1.16 7.36 -51.93 -0.38 0.78 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.08 1.41 6.58 -51.93 -0.34 1.07 16 38 H 0.07 1.60 6.16 -51.93 -0.32 1.28 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -27.47 311.34 -9.82 -37.28 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.31 Total: 2.23 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.05 Total: -21.14 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.15 Total: -36.61 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.58 Total: 16.07 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.42 Total: -2.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.47 -9.82 -37.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.897 kcal (2) G-P(sol) polarization free energy of solvation -27.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds