Wall clock time and date at job start Tue Mar 31 2020 00:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46531 * 2 1 4 4 H 1.08994 * 109.47275 * 303.66973 * 3 2 1 5 5 C 1.50707 * 109.46806 * 183.67509 * 3 2 1 6 6 H 1.07997 * 119.99924 * 305.07933 * 5 3 2 7 7 C 1.37882 * 120.00044 * 125.07582 * 5 3 2 8 8 N 1.31512 * 119.99875 * 172.88081 * 7 5 3 9 9 Si 1.86801 * 119.99662 * 352.88279 * 7 5 3 10 10 H 1.48500 * 109.47129 * 84.91594 * 9 7 5 11 11 H 1.48500 * 109.46756 * 204.91042 * 9 7 5 12 12 H 1.48493 * 109.47346 * 324.90948 * 9 7 5 13 13 N 1.46896 * 109.47078 * 63.67813 * 3 2 1 14 14 C 1.47171 * 110.99850 * 189.99412 * 13 3 2 15 15 C 1.52896 * 108.48916 * 165.28913 * 14 13 3 16 16 C 1.50720 * 109.94765 * 50.40887 * 15 14 13 17 17 C 1.38798 * 118.48308 * 163.19658 * 16 15 14 18 18 Cl 1.73597 * 119.83966 * 359.83334 * 17 16 15 19 19 C 1.38151 * 120.31949 * 179.81844 * 17 16 15 20 20 C 1.38241 * 119.81028 * 359.97438 * 19 17 16 21 21 C 1.38016 * 119.88560 * 0.09469 * 20 19 17 22 22 C 1.37808 * 121.67194 * 343.16670 * 16 15 14 23 23 C 1.46632 * 111.00249 * 67.00400 * 13 3 2 24 24 H 1.08998 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47299 * 299.99654 * 1 2 3 26 26 H 1.08996 * 109.47785 * 60.00037 * 1 2 3 27 27 H 1.08994 * 109.47073 * 240.00357 * 2 1 3 28 28 H 1.08997 * 109.47376 * 119.99615 * 2 1 3 29 29 H 0.97004 * 119.99644 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.62971 * 45.59426 * 14 13 3 31 31 H 1.08997 * 109.79845 * 285.08877 * 14 13 3 32 32 H 1.09004 * 109.39420 * 170.55539 * 15 14 13 33 33 H 1.09001 * 109.39692 * 290.26627 * 15 14 13 34 34 H 1.08002 * 120.09005 * 180.02562 * 19 17 16 35 35 H 1.07997 * 120.05542 * 180.11565 * 20 19 17 36 36 H 1.08002 * 119.79526 * 180.02562 * 21 20 19 37 37 H 1.09002 * 109.27005 * 296.15582 * 23 13 3 38 38 H 1.08997 * 109.27061 * 55.65949 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6238 1.9750 -0.8552 5 6 3.5442 1.4437 -0.0911 6 1 4.1291 0.8903 0.6286 7 6 4.1737 2.1510 -1.0933 8 7 5.4836 2.2683 -1.0924 9 14 3.1659 2.9429 -2.4523 10 1 2.6899 4.2758 -2.0030 11 1 4.0081 3.1010 -3.6651 12 1 1.9986 2.0813 -2.7691 13 7 1.6240 2.1089 1.2414 14 6 1.8869 3.5555 1.1770 15 6 1.1166 4.2390 2.3072 16 6 1.3943 3.5414 3.6140 17 6 1.0861 4.2016 4.7954 18 17 0.4012 5.7958 4.7405 19 6 1.3214 3.5961 6.0146 20 6 1.8661 2.3262 6.0575 21 6 2.1740 1.6700 4.8830 22 6 1.9407 2.2770 3.6575 23 6 2.2976 1.5219 2.4040 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 5.9264 2.7657 -1.7977 30 1 1.5512 3.9463 0.2165 31 1 2.9541 3.7425 1.2958 32 1 1.4289 5.2809 2.3796 33 1 0.0484 4.1969 2.0944 34 1 1.0797 4.1131 6.9315 35 1 2.0499 1.8484 7.0084 36 1 2.5991 0.6778 4.9182 37 1 1.9899 0.4816 2.5107 38 1 3.3764 1.5642 2.2540 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:24 Heat of formation + Delta-G solvation = -4.001880 kcal Electronic energy + Delta-G solvation = -20126.670987 eV Core-core repulsion = 17186.443702 eV Total energy + Delta-G solvation = -2940.227285 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.11818 -38.82942 -37.35459 -35.41187 -34.17799 -33.03836 -31.89213 -29.98660 -28.89057 -25.88847 -24.86616 -23.80674 -23.07490 -21.35782 -20.17791 -19.08554 -17.84066 -16.88529 -16.50288 -16.40905 -15.91142 -15.78444 -15.18772 -14.82449 -14.58514 -14.44003 -14.08288 -13.93310 -13.76774 -13.41028 -13.17100 -12.91313 -12.80021 -12.69064 -12.42849 -12.24162 -12.04869 -11.87508 -11.76933 -11.67202 -11.45035 -11.32567 -11.00645 -10.71612 -9.60163 -9.52619 -8.90209 -8.33504 -6.38085 0.23999 0.37579 1.20221 1.28349 1.31827 1.40301 2.28629 2.69084 2.96166 3.39708 3.75148 3.76538 4.08872 4.11680 4.25571 4.40959 4.49138 4.55386 4.57933 4.62502 4.72575 4.75487 4.84426 4.88675 4.95786 4.96615 5.11477 5.21649 5.25740 5.31406 5.37093 5.42953 5.49737 5.56720 5.63603 5.73991 5.91572 6.12896 6.41210 6.50931 6.70568 7.31335 8.82587 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.005967 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.751965 B = 4691.705424 C = 5084.731004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C 0.169 3.831 4 H 0.043 0.957 5 C -0.532 4.532 6 H 0.037 0.963 7 C 0.025 3.975 8 N -0.942 5.942 9 Si 0.925 3.075 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.247 1.247 13 N -0.515 5.515 14 C 0.061 3.939 15 C -0.068 4.068 16 C -0.076 4.076 17 C -0.047 4.047 18 Cl -0.071 7.071 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.120 4.120 22 C -0.074 4.074 23 C 0.101 3.899 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.264 0.736 30 H 0.061 0.939 31 H 0.012 0.988 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.155 0.845 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.086 0.914 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 2.060 12.300 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.063 3.937 4 H 0.061 0.939 5 C -0.571 4.571 6 H 0.056 0.944 7 C -0.174 4.174 8 N -0.582 5.582 9 Si 0.750 3.250 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.239 5.239 14 C -0.068 4.068 15 C -0.105 4.105 16 C -0.077 4.077 17 C -0.073 4.073 18 Cl -0.042 7.042 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.075 4.075 23 C -0.027 4.027 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.158 0.842 37 H 0.104 0.896 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.881 2.200 12.237 17.198 hybrid contribution 1.312 0.661 -1.189 1.890 sum -10.569 2.861 11.049 15.555 Atomic orbital electron populations 1.21638 0.94873 1.00950 1.01633 1.21498 0.96000 0.96188 1.00448 1.19817 0.91629 0.93255 0.89033 0.93908 1.21714 0.92531 1.29920 1.12962 0.94448 1.25856 0.95480 0.96121 0.99931 1.70064 1.10253 1.43108 1.34767 0.86082 0.79554 0.80040 0.79334 1.18861 1.21642 1.17104 1.63001 1.55355 1.02120 1.03376 1.21870 0.96993 0.89899 0.98045 1.20538 1.01326 0.98183 0.90430 1.19532 0.99431 0.94324 0.94460 1.21008 1.03572 0.87884 0.94884 1.98333 1.83363 1.23705 1.98828 1.21261 0.99957 0.95994 0.96323 1.21329 0.97872 0.93984 0.99083 1.21404 0.99841 1.01171 0.91421 1.19867 0.98103 0.93778 0.95737 1.20750 0.96701 0.97742 0.87543 0.92351 0.92165 0.93862 0.93473 0.93053 0.92679 0.92038 0.96911 0.90033 0.89211 0.82776 0.81824 0.84183 0.89554 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.79 71.98 0.70 -3.53 16 2 C -0.10 -4.00 5.30 30.60 0.16 -3.83 16 3 C 0.17 7.55 1.70 44.17 0.08 7.62 16 4 H 0.04 1.96 4.43 -2.39 -0.01 1.95 16 5 C -0.53 -28.73 7.12 25.60 0.18 -28.55 16 6 H 0.04 2.26 7.02 -2.91 -0.02 2.24 16 7 C 0.03 1.41 5.47 84.66 0.46 1.88 16 8 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 9 Si 0.93 43.17 26.92 68.60 1.85 45.01 16 10 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.25 -10.77 6.68 99.48 0.66 -10.10 16 13 N -0.52 -20.78 4.03 -880.27 -3.55 -24.33 16 14 C 0.06 2.45 5.15 86.22 0.44 2.89 16 15 C -0.07 -2.23 5.26 29.82 0.16 -2.07 16 16 C -0.08 -2.46 5.77 -19.83 -0.11 -2.58 16 17 C -0.05 -1.29 6.31 22.38 0.14 -1.14 16 18 Cl -0.07 -1.76 27.39 -2.72 -0.07 -1.83 16 19 C -0.12 -2.62 9.82 22.25 0.22 -2.40 16 20 C -0.10 -2.22 10.04 22.22 0.22 -2.00 16 21 C -0.12 -3.17 9.65 22.34 0.22 -2.96 16 22 C -0.07 -2.46 5.79 -19.87 -0.12 -2.58 16 23 C 0.10 3.88 4.60 85.58 0.39 4.27 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.91 7.71 -2.39 -0.02 1.90 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.95 6.50 -2.39 -0.02 1.94 16 29 H 0.26 15.27 8.31 -92.70 -0.77 14.49 16 30 H 0.06 2.48 7.74 -2.39 -0.02 2.46 16 31 H 0.01 0.59 7.81 -2.39 -0.02 0.57 16 32 H 0.08 2.52 7.36 -2.39 -0.02 2.50 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.09 3.11 6.58 -2.39 -0.02 3.09 16 38 H 0.03 1.53 6.16 -2.39 -0.01 1.51 16 Total: -1.00 -61.98 311.34 2.69 -59.30 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 1.01 Total: 14.06 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 3.15 Total: -34.96 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.25 Total: -81.58 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.85 Total: 45.01 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -61.98 2.69 -59.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.297 kcal (2) G-P(sol) polarization free energy of solvation -61.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds