Wall clock time and date at job start Tue Mar 31 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 H 1.09004 * 109.46542 * 53.15703 * 3 2 1 5 5 C 1.50691 * 109.47309 * 173.15258 * 3 2 1 6 6 H 1.08005 * 120.00053 * 114.17539 * 5 3 2 7 7 C 1.37885 * 120.00403 * 294.17465 * 5 3 2 8 8 N 1.31512 * 119.99435 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47260 * 60.00128 * 9 7 5 11 11 H 1.48504 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47110 * 299.99804 * 9 7 5 13 13 N 1.46901 * 109.47390 * 293.15933 * 3 2 1 14 14 C 1.47158 * 111.00116 * 76.87088 * 13 3 2 15 15 C 1.52898 * 108.65894 * 52.04821 * 14 13 3 16 16 C 1.51165 * 109.70751 * 50.33909 * 15 14 13 17 17 C 1.38795 * 118.40620 * 163.30346 * 16 15 14 18 18 Cl 1.73602 * 119.83795 * 359.85776 * 17 16 15 19 19 C 1.38153 * 120.32275 * 179.84196 * 17 16 15 20 20 C 1.38241 * 119.81015 * 0.02562 * 19 17 16 21 21 C 1.38023 * 119.88254 * 0.05419 * 20 19 17 22 22 C 1.37812 * 121.74969 * 343.28833 * 16 15 14 23 23 C 1.46624 * 110.99838 * 199.87062 * 13 3 2 24 24 H 1.09003 * 109.46608 * 206.32197 * 1 2 3 25 25 H 1.08996 * 109.47294 * 326.31497 * 1 2 3 26 26 H 1.08994 * 109.47745 * 86.32398 * 1 2 3 27 27 H 1.08998 * 109.47191 * 240.00575 * 2 1 3 28 28 H 1.08994 * 109.47641 * 120.00075 * 2 1 3 29 29 H 0.97004 * 119.99594 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.63547 * 171.84841 * 14 13 3 31 31 H 1.09000 * 109.63504 * 292.24653 * 14 13 3 32 32 H 1.09001 * 109.39197 * 170.66089 * 15 14 13 33 33 H 1.08998 * 109.39415 * 290.36922 * 15 14 13 34 34 H 1.08000 * 120.09184 * 180.02562 * 19 17 16 35 35 H 1.07996 * 120.05564 * 180.10056 * 20 19 17 36 36 H 1.08002 * 119.79163 * 180.02562 * 21 20 19 37 37 H 1.09007 * 109.27058 * 49.30117 * 23 13 3 38 38 H 1.09004 * 109.27024 * 168.79805 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 1.9904 0.8225 5 6 3.5373 1.4460 0.1694 6 1 4.1707 1.7961 -0.6324 7 6 4.0989 1.0022 1.3479 8 7 3.3277 0.5765 2.3243 9 14 5.9551 1.0059 1.5575 10 1 6.4665 2.3929 1.4164 11 1 6.3022 0.4856 2.9044 12 1 6.5722 0.1426 0.5188 13 7 1.6897 2.0858 -1.2734 14 6 0.2675 2.4631 -1.3000 15 6 -0.0460 3.2779 -0.0448 16 6 0.9675 4.3890 0.1080 17 6 0.6699 5.4412 0.9628 18 17 -0.8393 5.4570 1.8205 19 6 1.5691 6.4759 1.1347 20 6 2.7707 6.4628 0.4512 21 6 3.0662 5.4174 -0.4001 22 6 2.1645 4.3777 -0.5749 23 6 2.5314 3.2614 -1.5172 24 1 -0.3633 -0.9212 0.4557 25 1 -0.3634 0.8551 0.5699 26 1 -0.3634 0.0659 -1.0254 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7228 0.2639 3.1533 30 1 0.0644 3.0636 -2.1867 31 1 -0.3495 1.5646 -1.3169 32 1 -1.0461 3.7031 -0.1298 33 1 -0.0039 2.6275 0.8289 34 1 1.3339 7.2926 1.8011 35 1 3.4772 7.2688 0.5839 36 1 4.0056 5.4085 -0.9330 37 1 3.5770 2.9926 -1.3667 38 1 2.3909 3.5976 -2.5445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:28 Heat of formation + Delta-G solvation = 32.467138 kcal Electronic energy + Delta-G solvation = -20675.329332 eV Core-core repulsion = 17736.683463 eV Total energy + Delta-G solvation = -2938.645869 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04134 -37.31978 -36.08854 -33.42007 -32.18554 -31.60713 -29.90104 -28.87996 -26.74395 -24.39803 -23.11683 -22.11677 -21.72079 -20.49756 -18.29773 -16.73591 -16.13519 -15.68925 -15.03355 -14.67402 -14.41238 -14.05302 -13.65922 -13.40160 -13.11841 -12.71796 -12.31143 -12.17104 -11.88044 -11.67745 -11.50441 -11.38362 -11.09483 -10.99326 -10.87066 -10.79344 -10.65463 -10.44351 -10.19329 -9.87018 -9.65786 -9.27201 -8.68751 -8.41543 -8.22617 -8.12161 -7.20240 -6.03274 -4.06890 1.55881 1.69436 2.46665 3.29682 3.34943 3.36540 4.00674 4.39547 4.95298 5.05653 5.23450 5.30612 5.33392 5.52450 5.66184 5.74799 5.82805 5.93497 6.11017 6.14342 6.23671 6.25738 6.31719 6.41089 6.50758 6.57378 6.58745 6.66516 6.74487 6.97688 7.02519 7.15099 7.23998 7.33961 7.54202 7.73630 7.84154 8.11375 8.29520 8.57742 8.99204 9.57558 11.04555 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.008025 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.152805 B = 3488.065607 C = 4170.551489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C 0.207 3.793 4 H 0.023 0.977 5 C -0.515 4.515 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.523 5.523 14 C 0.034 3.966 15 C -0.120 4.120 16 C -0.058 4.058 17 C -0.034 4.034 18 Cl -0.084 7.084 19 C -0.125 4.125 20 C -0.118 4.118 21 C -0.111 4.111 22 C -0.066 4.066 23 C 0.088 3.912 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.261 0.739 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 8.502 -4.276 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C 0.102 3.898 4 H 0.040 0.960 5 C -0.553 4.553 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.244 5.244 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.059 4.059 17 C -0.061 4.061 18 Cl -0.055 7.055 19 C -0.144 4.144 20 C -0.136 4.136 21 C -0.130 4.130 22 C -0.068 4.068 23 C -0.041 4.041 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.042 8.038 -4.391 10.455 hybrid contribution 0.776 0.703 1.224 1.611 sum -4.266 8.740 -3.167 10.229 Atomic orbital electron populations 1.22200 0.99686 0.99809 0.99320 1.21507 0.91456 0.99712 1.01732 1.19457 0.95342 0.90662 0.84368 0.95970 1.21220 0.91177 1.43036 0.99848 0.91783 1.24892 0.97719 0.95239 0.95882 1.69912 1.34639 1.42819 1.05141 0.86710 0.86041 0.78357 0.77239 1.20338 1.21376 1.20205 1.62716 1.00991 1.22790 1.37940 1.22641 0.92530 0.99128 0.95110 1.21310 0.96403 0.95743 1.02353 1.19498 0.95925 0.94673 0.95801 1.20859 0.88741 0.97818 0.98673 1.98319 1.32419 1.98483 1.76264 1.20806 0.94109 0.98097 1.01367 1.20908 0.96220 0.98999 0.97465 1.21154 0.99225 0.93806 0.98785 1.20524 0.92172 0.96600 0.97512 1.21343 1.01468 0.86538 0.94733 0.94995 0.93458 0.93634 0.94014 0.89882 0.92945 0.92415 0.88844 0.91112 0.88900 0.85812 0.85847 0.85829 0.86978 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.32 37.16 0.31 -2.62 16 2 C -0.11 -2.43 5.49 -26.73 -0.15 -2.58 16 3 C 0.21 4.90 1.14 -68.87 -0.08 4.82 16 4 H 0.02 0.60 4.99 -51.93 -0.26 0.34 16 5 C -0.51 -13.33 7.66 -34.44 -0.26 -13.60 16 6 H 0.06 1.63 5.56 -52.48 -0.29 1.34 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.81 11.75 55.43 0.65 -24.16 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.52 -10.64 4.87 -229.60 -1.12 -11.76 16 14 C 0.03 0.60 5.35 -3.74 -0.02 0.58 16 15 C -0.12 -2.15 4.17 -27.71 -0.12 -2.26 16 16 C -0.06 -1.08 5.25 -104.34 -0.55 -1.63 16 17 C -0.03 -0.60 6.31 -39.41 -0.25 -0.85 16 18 Cl -0.08 -1.31 27.40 -51.86 -1.42 -2.73 16 19 C -0.13 -1.96 9.83 -39.61 -0.39 -2.35 16 20 C -0.12 -1.77 10.05 -39.66 -0.40 -2.17 16 21 C -0.11 -1.84 9.65 -39.47 -0.38 -2.22 16 22 C -0.07 -1.23 5.44 -104.63 -0.57 -1.80 16 23 C 0.09 1.65 5.16 -5.17 -0.03 1.63 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.90 5.23 -51.93 -0.27 0.63 16 26 H 0.04 0.79 6.22 -51.93 -0.32 0.46 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 2.15 6.42 -51.93 -0.33 1.82 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.09 1.58 4.23 -51.93 -0.22 1.36 16 32 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 33 H 0.09 1.89 4.84 -51.93 -0.25 1.63 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.11 2.28 5.12 -51.93 -0.27 2.02 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 298.93 15.07 4.50 4.50 Total: -1.00 -27.54 298.93 -10.06 -37.60 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.69 Total: 4.08 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.97 Total: -23.40 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: -0.47 Total: -35.91 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.42 Total: -2.73 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.54 -10.06 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.065 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds