Wall clock time and date at job start Tue Mar 31 2020 00:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47049 * 2 1 4 4 H 1.09004 * 109.46542 * 53.15703 * 3 2 1 5 5 C 1.50691 * 109.47309 * 173.15258 * 3 2 1 6 6 H 1.08005 * 120.00053 * 114.17539 * 5 3 2 7 7 C 1.37885 * 120.00403 * 294.17465 * 5 3 2 8 8 N 1.31512 * 119.99435 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00129 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47260 * 60.00128 * 9 7 5 11 11 H 1.48504 * 109.47159 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47110 * 299.99804 * 9 7 5 13 13 N 1.46901 * 109.47390 * 293.15933 * 3 2 1 14 14 C 1.47158 * 111.00116 * 76.87088 * 13 3 2 15 15 C 1.52898 * 108.65894 * 52.04821 * 14 13 3 16 16 C 1.51165 * 109.70751 * 50.33909 * 15 14 13 17 17 C 1.38795 * 118.40620 * 163.30346 * 16 15 14 18 18 Cl 1.73602 * 119.83795 * 359.85776 * 17 16 15 19 19 C 1.38153 * 120.32275 * 179.84196 * 17 16 15 20 20 C 1.38241 * 119.81015 * 0.02562 * 19 17 16 21 21 C 1.38023 * 119.88254 * 0.05419 * 20 19 17 22 22 C 1.37812 * 121.74969 * 343.28833 * 16 15 14 23 23 C 1.46624 * 110.99838 * 199.87062 * 13 3 2 24 24 H 1.09003 * 109.46608 * 206.32197 * 1 2 3 25 25 H 1.08996 * 109.47294 * 326.31497 * 1 2 3 26 26 H 1.08994 * 109.47745 * 86.32398 * 1 2 3 27 27 H 1.08998 * 109.47191 * 240.00575 * 2 1 3 28 28 H 1.08994 * 109.47641 * 120.00075 * 2 1 3 29 29 H 0.97004 * 119.99594 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.63547 * 171.84841 * 14 13 3 31 31 H 1.09000 * 109.63504 * 292.24653 * 14 13 3 32 32 H 1.09001 * 109.39197 * 170.66089 * 15 14 13 33 33 H 1.08998 * 109.39415 * 290.36922 * 15 14 13 34 34 H 1.08000 * 120.09184 * 180.02562 * 19 17 16 35 35 H 1.07996 * 120.05564 * 180.10056 * 20 19 17 36 36 H 1.08002 * 119.79163 * 180.02562 * 21 20 19 37 37 H 1.09007 * 109.27058 * 49.30117 * 23 13 3 38 38 H 1.09004 * 109.27024 * 168.79805 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 1.9904 0.8225 5 6 3.5373 1.4460 0.1694 6 1 4.1707 1.7961 -0.6324 7 6 4.0989 1.0022 1.3479 8 7 3.3277 0.5765 2.3243 9 14 5.9551 1.0059 1.5575 10 1 6.4665 2.3929 1.4164 11 1 6.3022 0.4856 2.9044 12 1 6.5722 0.1426 0.5188 13 7 1.6897 2.0858 -1.2734 14 6 0.2675 2.4631 -1.3000 15 6 -0.0460 3.2779 -0.0448 16 6 0.9675 4.3890 0.1080 17 6 0.6699 5.4412 0.9628 18 17 -0.8393 5.4570 1.8205 19 6 1.5691 6.4759 1.1347 20 6 2.7707 6.4628 0.4512 21 6 3.0662 5.4174 -0.4001 22 6 2.1645 4.3777 -0.5749 23 6 2.5314 3.2614 -1.5172 24 1 -0.3633 -0.9212 0.4557 25 1 -0.3634 0.8551 0.5699 26 1 -0.3634 0.0659 -1.0254 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7228 0.2639 3.1533 30 1 0.0644 3.0636 -2.1867 31 1 -0.3495 1.5646 -1.3169 32 1 -1.0461 3.7031 -0.1298 33 1 -0.0039 2.6275 0.8289 34 1 1.3339 7.2926 1.8011 35 1 3.4772 7.2688 0.5839 36 1 4.0056 5.4085 -0.9330 37 1 3.5770 2.9926 -1.3667 38 1 2.3909 3.5976 -2.5445 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173636.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:28 Heat of formation + Delta-G solvation = 17.844602 kcal Electronic energy + Delta-G solvation = -20675.963413 eV Core-core repulsion = 17736.683463 eV Total energy + Delta-G solvation = -2939.279950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44335 -38.76778 -37.35996 -35.19297 -33.70049 -33.26867 -31.32258 -30.33125 -28.45151 -26.06232 -24.64924 -23.59911 -23.05756 -22.13705 -19.90432 -18.43439 -17.58277 -17.22035 -16.56102 -16.08973 -16.05163 -15.67546 -15.16305 -14.82366 -14.45507 -14.31960 -13.90677 -13.64502 -13.47031 -13.15843 -13.05407 -12.86077 -12.72413 -12.56109 -12.43073 -12.31838 -12.24060 -11.95453 -11.70187 -11.55398 -11.38992 -10.99253 -10.50165 -10.38717 -9.51607 -9.45437 -8.82734 -8.06657 -6.14539 0.27137 0.41032 1.19291 1.42164 1.43091 1.49270 2.44618 2.72096 3.24872 3.46160 3.77372 3.92437 4.11525 4.18205 4.32684 4.45168 4.48519 4.56837 4.61997 4.64662 4.80552 4.82776 4.86692 4.97685 5.05201 5.07063 5.16692 5.31054 5.33945 5.43107 5.47434 5.58078 5.63981 5.76180 5.77054 5.95098 5.99233 6.31652 6.45340 6.82071 7.03442 7.53294 9.00308 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.008025 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.152805 B = 3488.065607 C = 4170.551489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C 0.219 3.781 4 H -0.007 1.007 5 C -0.520 4.520 6 H 0.066 0.934 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.271 1.271 13 N -0.529 5.529 14 C 0.036 3.964 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.051 4.051 18 Cl -0.076 7.076 19 C -0.127 4.127 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.089 4.089 23 C 0.089 3.911 24 H 0.041 0.959 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 10.032 -5.146 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.011 0.989 5 C -0.558 4.558 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.770 3.230 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.197 1.197 13 N -0.251 5.251 14 C -0.092 4.092 15 C -0.148 4.148 16 C -0.084 4.084 17 C -0.077 4.077 18 Cl -0.047 7.047 19 C -0.145 4.145 20 C -0.130 4.130 21 C -0.140 4.140 22 C -0.091 4.091 23 C -0.039 4.039 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.111 0.889 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.927 9.579 -5.282 11.997 hybrid contribution 0.719 0.293 1.474 1.666 sum -4.208 9.871 -3.808 11.387 Atomic orbital electron populations 1.22065 0.96684 1.00258 1.00897 1.21368 0.94217 0.98996 0.99626 1.19144 0.93860 0.90760 0.85013 0.98912 1.21616 0.92767 1.41795 0.99650 0.91621 1.25587 1.01396 0.95378 0.95902 1.70055 1.36030 1.44192 1.05447 0.85828 0.81721 0.78557 0.76880 1.19593 1.21755 1.19661 1.62645 1.02781 1.23931 1.35696 1.22704 0.90889 0.99744 0.95864 1.21173 0.97303 0.95306 1.01063 1.19667 0.96429 0.95425 0.96911 1.21076 0.89650 0.98170 0.98824 1.98315 1.31901 1.98473 1.75996 1.21198 0.93868 0.98134 1.01313 1.21330 0.96459 0.99230 0.96010 1.21459 0.99551 0.93722 0.99251 1.20598 0.92919 0.97307 0.98266 1.21288 0.99996 0.86339 0.96277 0.93965 0.93743 0.91295 0.94621 0.93333 0.93433 0.90347 0.88205 0.89555 0.91843 0.83363 0.82328 0.84108 0.88934 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 8.32 71.98 0.60 -4.78 16 2 C -0.10 -4.84 5.49 30.59 0.17 -4.67 16 3 C 0.22 10.49 1.14 44.17 0.05 10.54 16 4 H -0.01 -0.36 4.99 -2.38 -0.01 -0.37 16 5 C -0.52 -27.28 7.66 25.60 0.20 -27.09 16 6 H 0.07 3.36 5.56 -2.91 -0.02 3.34 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.92 -52.76 11.75 21.45 0.25 -52.51 16 9 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 N -0.53 -21.24 4.87 -880.32 -4.29 -25.53 16 14 C 0.04 1.22 5.35 86.22 0.46 1.68 16 15 C -0.11 -3.90 4.17 29.96 0.12 -3.78 16 16 C -0.08 -3.05 5.25 -19.68 -0.10 -3.16 16 17 C -0.05 -1.70 6.31 22.38 0.14 -1.56 16 18 Cl -0.08 -2.30 27.40 -2.72 -0.07 -2.37 16 19 C -0.13 -3.67 9.83 22.25 0.22 -3.45 16 20 C -0.11 -3.07 10.05 22.22 0.22 -2.85 16 21 C -0.12 -3.79 9.65 22.34 0.22 -3.58 16 22 C -0.09 -3.22 5.44 -19.87 -0.11 -3.33 16 23 C 0.09 3.29 5.16 85.58 0.44 3.74 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.70 5.23 -2.39 -0.01 1.69 16 26 H 0.07 2.27 6.22 -2.39 -0.01 2.25 16 27 H 0.03 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.05 2.60 6.42 -2.39 -0.02 2.58 16 29 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 30 H 0.08 2.34 8.05 -2.38 -0.02 2.32 16 31 H 0.10 3.21 4.23 -2.39 -0.01 3.20 16 32 H 0.09 2.68 7.38 -2.39 -0.02 2.67 16 33 H 0.06 2.63 4.84 -2.39 -0.01 2.62 16 34 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 35 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.09 3.75 5.12 -2.38 -0.01 3.74 16 38 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 Total: -1.00 -59.78 298.93 2.07 -57.70 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 1.08 Total: 18.48 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 3.08 Total: -40.95 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -4.03 Total: -78.04 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.07 Total: -2.37 kcal Total: -59.78 2.07 -57.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173636.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.547 kcal (2) G-P(sol) polarization free energy of solvation -59.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds