Wall clock time and date at job start Tue Mar 31 2020 00:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 H 1.09003 * 109.47262 * 307.13899 * 3 2 1 5 5 C 1.50700 * 109.46822 * 187.14148 * 3 2 1 6 6 H 1.07996 * 119.99641 * 245.44790 * 5 3 2 7 7 C 1.37875 * 120.00118 * 65.44768 * 5 3 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00108 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47056 * 59.99878 * 9 7 5 11 11 H 1.48500 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46810 * 300.00393 * 9 7 5 13 13 N 1.46897 * 109.47171 * 67.14110 * 3 2 1 14 14 C 1.48332 * 111.00249 * 169.33325 * 13 3 2 15 15 C 1.55993 * 104.99507 * 122.92223 * 14 13 3 16 16 H 1.09000 * 116.13006 * 158.78099 * 15 14 13 17 17 C 1.57062 * 99.74376 * 32.89081 * 15 14 13 18 18 C 1.49792 * 111.00010 * 286.53853 * 13 3 2 19 19 H 1.09000 * 116.41304 * 74.05634 * 18 13 3 20 20 C 1.56104 * 103.75367 * 304.60888 * 18 13 3 21 21 H 1.09008 * 110.25654 * 47.59710 * 20 18 13 22 22 C 1.53002 * 110.26078 * 169.54062 * 20 18 13 23 23 F 1.39900 * 109.47169 * 59.99970 * 22 20 18 24 24 F 1.39900 * 109.47071 * 300.00042 * 22 20 18 25 25 F 1.39901 * 109.47047 * 180.02562 * 22 20 18 26 26 O 1.44109 * 105.40556 * 288.52618 * 20 18 13 27 27 H 1.09002 * 109.47711 * 35.64839 * 1 2 3 28 28 H 1.08998 * 109.47659 * 155.65195 * 1 2 3 29 29 H 1.09002 * 109.47029 * 275.65064 * 1 2 3 30 30 H 1.09002 * 109.46813 * 240.00653 * 2 1 3 31 31 H 1.08994 * 109.47424 * 120.00064 * 2 1 3 32 32 H 0.97002 * 120.00102 * 179.97438 * 8 7 5 33 33 H 1.08996 * 110.33756 * 241.80784 * 14 13 3 34 34 H 1.09006 * 110.33346 * 3.93649 * 14 13 3 35 35 H 1.09002 * 112.45435 * 191.26020 * 17 15 14 36 36 H 1.08999 * 112.45001 * 63.59320 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5761 1.9920 -0.8192 5 6 3.5366 1.4462 -0.1766 6 1 4.1734 1.8005 0.6203 7 6 4.0927 0.9971 -1.3556 8 7 3.3171 0.5661 -2.3263 9 14 5.9478 1.0023 -1.5749 10 1 6.5715 0.1454 -0.5347 11 1 6.2887 0.4755 -2.9208 12 1 6.4578 2.3908 -1.4435 13 7 1.6959 2.0835 1.2762 14 6 2.3879 3.3877 1.4196 15 6 1.2464 4.4287 1.6356 16 1 1.5354 5.3667 2.1096 17 6 0.2191 3.5375 2.4213 18 6 0.2319 2.3928 1.3441 19 1 -0.4359 1.5458 1.5013 20 6 -0.0246 3.2561 0.0690 21 1 0.4290 2.7851 -0.8032 22 6 -1.5272 3.4420 -0.1517 23 9 -2.0850 4.0873 0.9572 24 9 -2.1324 2.1915 -0.3168 25 9 -1.7379 4.2165 -1.2975 26 8 0.6017 4.5266 0.3345 27 1 -0.3634 0.8351 -0.5989 28 1 -0.3634 -0.9362 -0.4237 29 1 -0.3633 0.1012 1.0227 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7083 0.2505 -3.1559 33 1 3.0533 3.3706 2.2827 34 1 2.9488 3.6205 0.5144 35 1 -0.7581 4.0115 2.5135 36 1 0.6067 3.2065 3.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:34 Heat of formation + Delta-G solvation = -149.846972 kcal Electronic energy + Delta-G solvation = -24493.288177 eV Core-core repulsion = 20564.170669 eV Total energy + Delta-G solvation = -3929.117507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.85341 -47.38536 -47.31779 -40.93624 -35.78907 -33.13272 -31.95786 -30.48621 -29.53801 -26.43347 -26.20080 -23.50284 -22.52123 -21.22703 -20.40711 -19.06656 -18.34194 -18.16705 -17.73151 -16.72172 -15.91633 -15.42466 -14.90521 -14.40946 -14.27764 -14.16914 -13.88102 -13.76501 -13.53651 -13.50202 -13.08361 -12.89032 -12.28035 -12.20944 -11.94793 -11.84528 -11.55020 -11.38982 -11.21183 -11.12977 -10.95321 -10.87664 -10.62906 -10.00088 -9.82259 -9.54033 -9.32579 -8.91669 -8.51056 -7.47141 -6.13960 -4.18355 2.91912 3.26049 3.31347 3.33342 3.57652 4.06824 4.19358 4.31263 4.54627 4.64111 4.72065 4.83567 5.02974 5.13243 5.22046 5.62935 5.83012 5.86576 6.00260 6.03727 6.12954 6.19517 6.31310 6.41804 6.55663 6.74559 6.84983 6.88092 7.03679 7.32221 7.44297 7.70310 7.88961 8.09809 8.32041 8.86561 9.46528 10.93619 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.007121 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.283695 B = 3930.987730 C = 4257.935719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.197 3.803 4 H 0.019 0.981 5 C -0.513 4.513 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.498 5.498 14 C 0.018 3.982 15 C 0.043 3.957 16 H 0.139 0.861 17 C -0.168 4.168 18 C 0.033 3.967 19 H 0.145 0.855 20 C -0.012 4.012 21 H 0.148 0.852 22 C 0.443 3.557 23 F -0.184 7.184 24 F -0.177 7.177 25 F -0.183 7.183 26 O -0.352 6.352 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.402 4.718 6.684 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C 0.092 3.908 4 H 0.036 0.964 5 C -0.552 4.552 6 H 0.081 0.919 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.221 5.221 14 C -0.110 4.110 15 C -0.014 4.014 16 H 0.156 0.844 17 C -0.206 4.206 18 C -0.075 4.075 19 H 0.162 0.838 20 C -0.074 4.074 21 H 0.165 0.835 22 C 0.388 3.612 23 F -0.165 7.165 24 F -0.159 7.159 25 F -0.165 7.165 26 O -0.271 6.271 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.221 4.442 6.740 10.830 hybrid contribution 0.448 0.372 -0.925 1.094 sum -6.772 4.814 5.814 10.141 Atomic orbital electron populations 1.22282 0.99392 1.00396 0.99323 1.21540 0.91515 0.99239 1.02329 1.19793 0.96184 0.91119 0.83733 0.96407 1.21034 0.90579 1.43199 1.00347 0.91855 1.24927 0.98257 0.95023 0.95724 1.69896 1.34927 1.42302 1.05432 0.86572 0.85279 0.78436 0.77234 1.20173 1.21283 1.20255 1.65297 1.00075 1.18954 1.37821 1.23855 0.95853 0.87890 1.03394 1.25292 0.94019 0.99458 0.82671 0.84391 1.24590 1.00380 0.96205 0.99432 1.25586 0.95320 0.96669 0.89958 0.83818 1.25642 0.86401 0.88774 1.06544 0.83541 1.21206 0.92619 0.73566 0.73808 1.93086 1.87778 1.82222 1.53421 1.93162 1.85496 1.41876 1.95360 1.93169 1.96084 1.75815 1.51394 1.89095 1.70221 1.30689 1.37060 0.93672 0.94354 0.93804 0.89368 0.93579 0.92658 0.90547 0.89402 0.89185 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.36 37.16 0.31 -2.62 16 2 C -0.11 -2.40 5.49 -26.73 -0.15 -2.55 16 3 C 0.20 4.55 1.28 -68.86 -0.09 4.46 16 4 H 0.02 0.47 4.81 -51.93 -0.25 0.22 16 5 C -0.51 -13.15 7.19 -34.44 -0.25 -13.40 16 6 H 0.06 1.62 7.08 -52.49 -0.37 1.25 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -24.15 11.72 55.43 0.65 -23.51 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.50 -9.77 5.12 -210.04 -1.08 -10.85 16 14 C 0.02 0.33 5.22 -1.43 -0.01 0.32 16 15 C 0.04 0.66 5.95 -22.93 -0.14 0.52 16 16 H 0.14 1.67 8.14 -51.93 -0.42 1.25 16 17 C -0.17 -2.40 6.65 -22.25 -0.15 -2.55 16 18 C 0.03 0.56 3.17 -62.16 -0.20 0.37 16 19 H 0.14 2.33 4.77 -51.93 -0.25 2.08 16 20 C -0.01 -0.22 1.91 -25.07 -0.05 -0.27 16 21 H 0.15 3.05 4.47 -51.92 -0.23 2.82 16 22 C 0.44 7.43 2.91 37.16 0.11 7.54 16 23 F -0.18 -2.88 14.67 2.25 0.03 -2.85 16 24 F -0.18 -2.89 15.30 2.25 0.03 -2.86 16 25 F -0.18 -3.23 17.31 2.25 0.04 -3.19 16 26 O -0.35 -6.45 10.82 -35.23 -0.38 -6.83 16 27 H 0.04 0.85 4.31 -51.93 -0.22 0.62 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.73 5.82 -51.93 -0.30 0.43 16 30 H 0.09 2.21 6.39 -51.93 -0.33 1.88 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.85 6.62 -51.93 -0.34 1.50 16 35 H 0.09 1.22 5.92 -51.93 -0.31 0.91 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 278.42 15.07 4.20 4.20 Total: -1.00 -26.78 278.42 -6.08 -32.86 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.86 Total: 4.10 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.70 Total: -6.61 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.43 Total: -34.36 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.38 Total: -6.83 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.11 Total: -8.90 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -26.78 -6.08 -32.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.987 kcal (2) G-P(sol) polarization free energy of solvation -26.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds