Wall clock time and date at job start Tue Mar 31 2020 00:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46978 * 2 1 4 4 H 1.09003 * 109.47262 * 307.13899 * 3 2 1 5 5 C 1.50700 * 109.46822 * 187.14148 * 3 2 1 6 6 H 1.07996 * 119.99641 * 245.44790 * 5 3 2 7 7 C 1.37875 * 120.00118 * 65.44768 * 5 3 2 8 8 N 1.31515 * 119.99948 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00108 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47056 * 59.99878 * 9 7 5 11 11 H 1.48500 * 109.47427 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46810 * 300.00393 * 9 7 5 13 13 N 1.46897 * 109.47171 * 67.14110 * 3 2 1 14 14 C 1.48332 * 111.00249 * 169.33325 * 13 3 2 15 15 C 1.55993 * 104.99507 * 122.92223 * 14 13 3 16 16 H 1.09000 * 116.13006 * 158.78099 * 15 14 13 17 17 C 1.57062 * 99.74376 * 32.89081 * 15 14 13 18 18 C 1.49792 * 111.00010 * 286.53853 * 13 3 2 19 19 H 1.09000 * 116.41304 * 74.05634 * 18 13 3 20 20 C 1.56104 * 103.75367 * 304.60888 * 18 13 3 21 21 H 1.09008 * 110.25654 * 47.59710 * 20 18 13 22 22 C 1.53002 * 110.26078 * 169.54062 * 20 18 13 23 23 F 1.39900 * 109.47169 * 59.99970 * 22 20 18 24 24 F 1.39900 * 109.47071 * 300.00042 * 22 20 18 25 25 F 1.39901 * 109.47047 * 180.02562 * 22 20 18 26 26 O 1.44109 * 105.40556 * 288.52618 * 20 18 13 27 27 H 1.09002 * 109.47711 * 35.64839 * 1 2 3 28 28 H 1.08998 * 109.47659 * 155.65195 * 1 2 3 29 29 H 1.09002 * 109.47029 * 275.65064 * 1 2 3 30 30 H 1.09002 * 109.46813 * 240.00653 * 2 1 3 31 31 H 1.08994 * 109.47424 * 120.00064 * 2 1 3 32 32 H 0.97002 * 120.00102 * 179.97438 * 8 7 5 33 33 H 1.08996 * 110.33756 * 241.80784 * 14 13 3 34 34 H 1.09006 * 110.33346 * 3.93649 * 14 13 3 35 35 H 1.09002 * 112.45435 * 191.26020 * 17 15 14 36 36 H 1.08999 * 112.45001 * 63.59320 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5761 1.9920 -0.8192 5 6 3.5366 1.4462 -0.1766 6 1 4.1734 1.8005 0.6203 7 6 4.0927 0.9971 -1.3556 8 7 3.3171 0.5661 -2.3263 9 14 5.9478 1.0023 -1.5749 10 1 6.5715 0.1454 -0.5347 11 1 6.2887 0.4755 -2.9208 12 1 6.4578 2.3908 -1.4435 13 7 1.6959 2.0835 1.2762 14 6 2.3879 3.3877 1.4196 15 6 1.2464 4.4287 1.6356 16 1 1.5354 5.3667 2.1096 17 6 0.2191 3.5375 2.4213 18 6 0.2319 2.3928 1.3441 19 1 -0.4359 1.5458 1.5013 20 6 -0.0246 3.2561 0.0690 21 1 0.4290 2.7851 -0.8032 22 6 -1.5272 3.4420 -0.1517 23 9 -2.0850 4.0873 0.9572 24 9 -2.1324 2.1915 -0.3168 25 9 -1.7379 4.2165 -1.2975 26 8 0.6017 4.5266 0.3345 27 1 -0.3634 0.8351 -0.5989 28 1 -0.3634 -0.9362 -0.4237 29 1 -0.3633 0.1012 1.0227 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.7083 0.2505 -3.1559 33 1 3.0533 3.3706 2.2827 34 1 2.9488 3.6205 0.5144 35 1 -0.7581 4.0115 2.5135 36 1 0.6067 3.2065 3.3848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175659.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:33 Heat of formation + Delta-G solvation = -167.429498 kcal Electronic energy + Delta-G solvation = -24494.050612 eV Core-core repulsion = 20564.170669 eV Total energy + Delta-G solvation = -3929.879943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.19300 -48.69584 -48.68065 -42.33682 -37.42632 -34.79720 -33.67620 -31.96355 -30.99986 -28.12343 -27.65763 -25.20217 -24.00606 -22.52948 -22.01880 -20.60889 -19.69913 -19.54873 -19.11097 -18.36991 -17.46214 -17.09025 -16.43642 -16.06691 -15.63061 -15.54817 -15.34308 -15.09976 -14.88420 -14.84734 -14.78992 -14.38162 -13.88966 -13.62861 -13.51876 -13.27473 -13.09898 -12.95817 -12.79874 -12.64674 -12.59602 -12.42500 -12.18923 -11.80366 -11.46463 -11.16548 -10.95752 -10.67833 -10.39778 -9.06774 -8.14344 -6.23460 1.41740 1.42168 1.49456 1.55661 2.25890 2.40204 2.70119 2.83814 3.10968 3.16373 3.30780 3.39185 3.54000 3.66575 3.93540 4.17393 4.42601 4.53283 4.58802 4.69790 4.73312 4.86684 4.92174 4.95132 5.06205 5.18178 5.28246 5.34111 5.46959 5.58917 5.65623 5.74761 6.14199 6.26443 6.49405 6.89067 7.44155 8.92225 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022997 B = 0.007121 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.283695 B = 3930.987730 C = 4257.935719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C 0.203 3.797 4 H -0.007 1.007 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.503 5.503 14 C 0.014 3.986 15 C 0.048 3.952 16 H 0.178 0.822 17 C -0.150 4.150 18 C 0.031 3.969 19 H 0.153 0.847 20 C -0.010 4.010 21 H 0.113 0.887 22 C 0.451 3.549 23 F -0.172 7.172 24 F -0.174 7.174 25 F -0.190 7.190 26 O -0.371 6.371 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 5.481 8.686 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C 0.096 3.904 4 H 0.010 0.990 5 C -0.560 4.560 6 H 0.077 0.923 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.226 5.226 14 C -0.114 4.114 15 C -0.008 4.008 16 H 0.195 0.805 17 C -0.187 4.187 18 C -0.078 4.078 19 H 0.171 0.829 20 C -0.071 4.071 21 H 0.130 0.870 22 C 0.396 3.604 23 F -0.153 7.153 24 F -0.155 7.155 25 F -0.171 7.171 26 O -0.290 6.290 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.882 5.212 8.760 12.885 hybrid contribution 0.655 0.168 -1.521 1.665 sum -7.228 5.380 7.239 11.558 Atomic orbital electron populations 1.22163 0.96525 1.00813 1.00871 1.21368 0.94116 0.98323 1.00332 1.19549 0.94594 0.91534 0.84696 0.99032 1.21368 0.92275 1.42304 1.00094 0.92325 1.25633 1.01986 0.95087 0.95712 1.70023 1.36296 1.43452 1.05714 0.85682 0.80903 0.78444 0.77037 1.19671 1.21306 1.19864 1.65209 1.02143 1.19949 1.35343 1.23858 0.96917 0.88334 1.02257 1.25627 0.92650 1.00658 0.81842 0.80528 1.24581 1.00815 0.94186 0.99156 1.25741 0.93605 0.97811 0.90631 0.82948 1.25374 0.87005 0.88994 1.05772 0.86986 1.20899 0.91932 0.73684 0.73874 1.93103 1.87504 1.82002 1.52729 1.93169 1.85326 1.41668 1.95359 1.93157 1.96064 1.76023 1.51898 1.89083 1.70449 1.30571 1.38940 0.94142 0.93287 0.91386 0.92763 0.94033 0.92981 0.88898 0.93120 0.87665 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 8.36 71.98 0.60 -4.77 16 2 C -0.10 -4.65 5.49 30.60 0.17 -4.48 16 3 C 0.20 9.56 1.28 44.17 0.06 9.61 16 4 H -0.01 -0.38 4.81 -2.39 -0.01 -0.40 16 5 C -0.52 -27.37 7.19 25.60 0.18 -27.19 16 6 H 0.06 3.05 7.08 -2.91 -0.02 3.02 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -51.58 11.72 21.45 0.25 -51.32 16 9 Si 0.95 42.89 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 N -0.50 -19.36 5.12 -818.43 -4.19 -23.55 16 14 C 0.01 0.51 5.22 87.06 0.45 0.96 16 15 C 0.05 1.35 5.95 33.06 0.20 1.55 16 16 H 0.18 3.53 8.14 -2.39 -0.02 3.51 16 17 C -0.15 -3.71 6.65 33.49 0.22 -3.48 16 18 C 0.03 0.97 3.17 46.90 0.15 1.12 16 19 H 0.15 4.54 4.77 -2.39 -0.01 4.53 16 20 C -0.01 -0.35 1.91 31.67 0.06 -0.29 16 21 H 0.11 4.84 4.47 -2.38 -0.01 4.83 16 22 C 0.45 14.48 2.91 71.98 0.21 14.69 16 23 F -0.17 -4.91 14.67 44.97 0.66 -4.25 16 24 F -0.17 -5.40 15.30 44.97 0.69 -4.71 16 25 F -0.19 -6.56 17.31 44.97 0.78 -5.79 16 26 O -0.37 -13.16 10.82 -148.98 -1.61 -14.77 16 27 H 0.04 1.51 4.31 -2.39 -0.01 1.50 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.14 5.82 -2.39 -0.01 2.12 16 30 H 0.05 2.82 6.39 -2.39 -0.02 2.80 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.05 2.17 6.62 -2.38 -0.02 2.15 16 35 H 0.11 2.37 5.92 -2.39 -0.01 2.35 16 36 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -58.93 278.42 2.48 -56.45 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.13 Total: 14.04 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 2.75 Total: -11.02 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -3.94 Total: -74.87 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.61 Total: -14.77 kcal Atomic # 9 Polarization: -16.87 SS G_CDS: 2.13 Total: -14.74 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -58.93 2.48 -56.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175659.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.980 kcal (2) G-P(sol) polarization free energy of solvation -58.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds