Wall clock time and date at job start Tue Mar 31 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 H 1.08997 * 109.46599 * 284.76375 * 3 2 1 5 5 C 1.50706 * 109.46911 * 164.77204 * 3 2 1 6 6 H 1.08003 * 119.99457 * 238.57781 * 5 3 2 7 7 C 1.37872 * 119.99996 * 58.57253 * 5 3 2 8 8 N 1.31514 * 120.00520 * 6.68218 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 186.67922 * 7 5 3 10 10 H 1.48500 * 109.47129 * 65.00167 * 9 7 5 11 11 H 1.48504 * 109.47258 * 185.00214 * 9 7 5 12 12 H 1.48497 * 109.47509 * 305.00176 * 9 7 5 13 13 N 1.46896 * 109.47452 * 44.76901 * 3 2 1 14 14 C 1.48332 * 110.99906 * 184.83084 * 13 3 2 15 15 C 1.56013 * 104.98732 * 122.92369 * 14 13 3 16 16 H 1.08995 * 116.75509 * 159.13559 * 15 14 13 17 17 C 1.57065 * 99.73972 * 32.88972 * 15 14 13 18 18 C 1.49794 * 110.99651 * 302.03992 * 13 3 2 19 19 H 1.09003 * 116.41312 * 74.97223 * 18 13 3 20 20 C 1.56099 * 103.75312 * 305.51888 * 18 13 3 21 21 H 1.09006 * 110.25735 * 169.54234 * 20 18 13 22 22 C 1.33197 * 125.38849 * 55.22539 * 4 3 2 23 23 F 1.39894 * 139.99839 * 254.98087 * 22 4 3 24 24 F 1.39902 * 67.70026 * 160.86671 * 22 4 3 25 25 F 1.04701 * 67.65165 * 11.79374 * 4 3 2 26 26 O 1.45535 * 104.19678 * 288.51696 * 15 14 13 27 27 H 1.09000 * 109.47316 * 151.69470 * 1 2 3 28 28 H 1.09004 * 109.47060 * 271.69488 * 1 2 3 29 29 H 1.09002 * 109.47072 * 31.69033 * 1 2 3 30 30 H 1.09004 * 109.46716 * 239.99686 * 2 1 3 31 31 H 1.09006 * 109.46987 * 120.00068 * 2 1 3 32 32 H 0.96991 * 120.00356 * 179.97438 * 8 7 5 33 33 H 1.08999 * 110.33639 * 241.79669 * 14 13 3 34 34 H 1.08996 * 110.33787 * 4.05253 * 14 13 3 35 35 H 1.08999 * 112.44654 * 191.25617 * 17 15 14 36 36 H 1.09005 * 112.45051 * 63.60159 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.9142 1.8722 -0.9937 5 6 3.5001 1.4590 0.3732 6 1 3.8309 2.0206 1.2344 7 6 4.4133 0.7573 -0.3846 8 7 4.0345 0.1823 -1.5052 9 14 6.1888 0.6231 0.1801 10 1 6.2481 -0.1481 1.4477 11 1 6.9881 -0.0725 -0.8604 12 1 6.7419 1.9833 0.4020 13 7 1.2763 2.2320 0.9753 14 6 1.6641 3.6627 0.9215 15 6 0.3370 4.4297 0.6309 16 1 0.3148 5.4879 0.8912 17 6 -0.6777 3.5028 1.3913 18 6 -0.1886 2.1978 0.6643 19 1 -0.7142 1.2740 0.9061 20 6 -0.2641 2.6755 -0.8199 21 1 -1.2666 2.5163 -1.2171 22 6 0.7678 1.9309 -1.6693 23 9 0.1251 1.3098 -2.7456 24 9 1.7160 2.8386 -2.1531 25 9 1.4059 0.9633 -0.8858 26 8 0.0341 4.1066 -0.7554 27 1 -0.3634 -0.9048 -0.4873 28 1 -0.3633 0.0304 1.0273 29 1 -0.3633 0.8745 -0.5399 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.6771 -0.3111 -2.0385 33 1 2.0823 3.9780 1.8774 34 1 2.3821 3.8306 0.1188 35 1 -1.7153 3.7440 1.1604 36 1 -0.4924 3.4755 2.4651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175660.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:44 Heat of formation + Delta-G solvation = 534.968328 kcal Electronic energy + Delta-G solvation = -26421.035494 eV Core-core repulsion = 22521.613807 eV Total energy + Delta-G solvation = -3899.421688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -63.50747 -47.67502 -46.05446 -40.62557 -34.74903 -33.43322 -32.97174 -31.52873 -30.40833 -27.57879 -26.09708 -24.60114 -23.58638 -22.16149 -21.11755 -20.17730 -18.94614 -18.32068 -17.84852 -16.34495 -16.09172 -15.65727 -15.50886 -14.89022 -14.41905 -13.53031 -13.39104 -13.07364 -12.87905 -12.66303 -12.37536 -12.30900 -12.10333 -12.02704 -11.77228 -11.48393 -11.24536 -11.12015 -10.93720 -10.77499 -10.66435 -10.49287 -10.34614 -9.85565 -9.33145 -9.03045 -8.88348 -7.96475 -6.62207 -6.25743 -4.71169 -4.51070 3.06936 3.20546 3.22067 3.42602 3.78517 4.02780 4.27047 4.42531 4.59384 4.79598 4.93533 5.14896 5.16532 5.28083 5.46730 5.60304 5.65970 5.78796 5.86368 5.91057 5.94639 6.04033 6.08942 6.22945 6.34167 6.42501 6.63528 6.69638 6.88639 7.02364 7.07762 7.39390 7.53591 8.00850 8.47609 8.86311 9.30917 10.54848 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.010102 C = 0.009046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.149695 B = 2771.008295 C = 3094.437534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.496 4.496 3 C 0.452 3.548 4 H -0.436 1.436 5 C -0.462 4.462 6 H 0.101 0.899 7 C 0.074 3.926 8 N -0.842 5.842 9 Si 0.912 3.088 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.268 1.268 13 N -0.479 5.479 14 C 0.020 3.980 15 C 0.044 3.956 16 H 0.137 0.863 17 C -0.158 4.158 18 C -0.010 4.010 19 H 0.179 0.821 20 C 0.010 3.990 21 H 0.095 0.905 22 C 0.076 3.924 23 F -0.213 7.213 24 F -0.150 7.150 25 F 0.650 6.350 26 O -0.361 6.361 27 H 0.032 0.968 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.011 0.989 32 H 0.277 0.723 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 4.044 4.875 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.535 4.535 3 C 0.343 3.657 4 H -0.434 1.434 5 C -0.497 4.497 6 H 0.119 0.881 7 C -0.137 4.137 8 N -0.473 5.473 9 Si 0.737 3.263 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.193 1.193 13 N -0.204 5.204 14 C -0.108 4.108 15 C -0.014 4.014 16 H 0.154 0.846 17 C -0.196 4.196 18 C -0.117 4.117 19 H 0.195 0.805 20 C -0.051 4.051 21 H 0.112 0.888 22 C 0.029 3.971 23 F -0.194 7.194 24 F -0.131 7.131 25 F 0.682 6.318 26 O -0.280 6.280 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.026 0.974 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.206 3.817 4.930 8.797 hybrid contribution 0.118 -0.145 -1.066 1.083 sum -6.088 3.672 3.863 8.091 Atomic orbital electron populations 1.25093 1.00961 1.01110 1.00077 1.31736 0.93711 1.29322 0.98759 1.18454 0.91420 0.78424 0.77415 1.43428 1.21435 0.88249 1.29444 1.10590 0.88089 1.25327 1.00513 0.94006 0.93849 1.69883 1.36598 1.29254 1.11572 0.86292 0.82017 0.79085 0.78924 1.19297 1.20640 1.19268 1.66148 1.00513 1.09136 1.44626 1.23809 0.96823 0.86959 1.03168 1.25203 0.95176 0.99568 0.81445 0.84554 1.24417 0.99080 0.94934 1.01176 1.26918 0.93669 1.01281 0.89812 0.80481 1.25155 0.97876 0.83318 0.98739 0.88769 1.36280 0.88607 0.88678 0.83512 1.92872 1.82940 1.83741 1.59880 1.92562 1.66622 1.67102 1.86832 1.75396 1.71154 1.38993 1.46270 1.89448 1.90050 1.21484 1.27039 0.94901 0.92351 0.91277 0.88760 0.97369 0.91317 0.89745 0.89233 0.90074 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 86. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.37 7.27 37.16 0.27 -4.10 16 2 C -0.50 -12.12 4.33 -26.73 -0.12 -12.24 16 3 C 0.45 11.04 0.76 -68.86 -0.05 10.99 16 4 H -0.44 -11.20 1.06 -142.12 -0.15 -11.35 16 5 C -0.46 -11.80 7.87 -34.44 -0.27 -12.07 16 6 H 0.10 2.44 7.61 -52.48 -0.40 2.04 16 7 C 0.07 1.90 5.23 -17.82 -0.09 1.80 16 8 N -0.84 -22.77 11.54 55.43 0.64 -22.13 16 9 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 N -0.48 -9.89 5.11 -323.29 -1.65 -11.55 16 14 C 0.02 0.37 5.57 -1.42 -0.01 0.36 16 15 C 0.04 0.70 5.95 -22.91 -0.14 0.57 16 16 H 0.14 1.71 8.14 -51.93 -0.42 1.29 16 17 C -0.16 -2.23 6.88 -22.25 -0.15 -2.39 16 18 C -0.01 -0.17 3.55 -62.16 -0.22 -0.40 16 19 H 0.18 2.93 3.74 -68.27 -0.26 2.68 16 20 C 0.01 0.19 2.76 -25.08 -0.07 0.12 16 21 H 0.09 1.73 7.97 -51.93 -0.41 1.32 16 22 C 0.08 1.84 2.01 37.15 0.07 1.92 16 23 F -0.21 -5.13 16.97 2.25 0.04 -5.09 16 24 F -0.15 -4.09 14.82 2.25 0.03 -4.05 16 25 F 0.65 15.96 1.93 2.25 0.00 15.97 16 26 O -0.36 -7.34 10.24 -35.23 -0.36 -7.70 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.05 6.24 -51.93 -0.32 0.73 16 29 H 0.07 1.37 1.96 -52.45 -0.10 1.26 16 30 H 0.10 2.56 6.09 -51.93 -0.32 2.24 16 31 H 0.01 0.28 8.04 -51.93 -0.42 -0.13 16 32 H 0.28 7.01 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.09 1.98 6.85 -51.93 -0.36 1.62 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 262.26 15.07 3.95 3.95 Total: -1.00 -29.56 262.26 -7.13 -36.69 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -3.99 Total: -5.11 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -0.77 Total: -15.43 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -1.01 Total: -33.67 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.36 Total: -7.70 kcal Atomic # 9 Polarization: 6.75 SS G_CDS: 0.08 Total: 6.82 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.56 -7.13 -36.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175660.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 571.655 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 542.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 534.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds