Wall clock time and date at job start Tue Mar 31 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 H 1.08997 * 109.46599 * 284.76375 * 3 2 1 5 5 C 1.50706 * 109.46911 * 164.77204 * 3 2 1 6 6 H 1.08003 * 119.99457 * 238.57781 * 5 3 2 7 7 C 1.37872 * 119.99996 * 58.57253 * 5 3 2 8 8 N 1.31514 * 120.00520 * 6.68218 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 186.67922 * 7 5 3 10 10 H 1.48500 * 109.47129 * 65.00167 * 9 7 5 11 11 H 1.48504 * 109.47258 * 185.00214 * 9 7 5 12 12 H 1.48497 * 109.47509 * 305.00176 * 9 7 5 13 13 N 1.46896 * 109.47452 * 44.76901 * 3 2 1 14 14 C 1.48332 * 110.99906 * 184.83084 * 13 3 2 15 15 C 1.56013 * 104.98732 * 122.92369 * 14 13 3 16 16 H 1.08995 * 116.75509 * 159.13559 * 15 14 13 17 17 C 1.57065 * 99.73972 * 32.88972 * 15 14 13 18 18 C 1.49794 * 110.99651 * 302.03992 * 13 3 2 19 19 H 1.09003 * 116.41312 * 74.97223 * 18 13 3 20 20 C 1.56099 * 103.75312 * 305.51888 * 18 13 3 21 21 H 1.09006 * 110.25735 * 169.54234 * 20 18 13 22 22 C 1.33197 * 125.38849 * 55.22539 * 4 3 2 23 23 F 1.39894 * 139.99839 * 254.98087 * 22 4 3 24 24 F 1.39902 * 67.70026 * 160.86671 * 22 4 3 25 25 F 1.04701 * 67.65165 * 11.79374 * 4 3 2 26 26 O 1.45535 * 104.19678 * 288.51696 * 15 14 13 27 27 H 1.09000 * 109.47316 * 151.69470 * 1 2 3 28 28 H 1.09004 * 109.47060 * 271.69488 * 1 2 3 29 29 H 1.09002 * 109.47072 * 31.69033 * 1 2 3 30 30 H 1.09004 * 109.46716 * 239.99686 * 2 1 3 31 31 H 1.09006 * 109.46987 * 120.00068 * 2 1 3 32 32 H 0.96991 * 120.00356 * 179.97438 * 8 7 5 33 33 H 1.08999 * 110.33639 * 241.79669 * 14 13 3 34 34 H 1.08996 * 110.33787 * 4.05253 * 14 13 3 35 35 H 1.08999 * 112.44654 * 191.25617 * 17 15 14 36 36 H 1.09005 * 112.45051 * 63.60159 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.9142 1.8722 -0.9937 5 6 3.5001 1.4590 0.3732 6 1 3.8309 2.0206 1.2344 7 6 4.4133 0.7573 -0.3846 8 7 4.0345 0.1823 -1.5052 9 14 6.1888 0.6231 0.1801 10 1 6.2481 -0.1481 1.4477 11 1 6.9881 -0.0725 -0.8604 12 1 6.7419 1.9833 0.4020 13 7 1.2763 2.2320 0.9753 14 6 1.6641 3.6627 0.9215 15 6 0.3370 4.4297 0.6309 16 1 0.3148 5.4879 0.8912 17 6 -0.6777 3.5028 1.3913 18 6 -0.1886 2.1978 0.6643 19 1 -0.7142 1.2740 0.9061 20 6 -0.2641 2.6755 -0.8199 21 1 -1.2666 2.5163 -1.2171 22 6 0.7678 1.9309 -1.6693 23 9 0.1251 1.3098 -2.7456 24 9 1.7160 2.8386 -2.1531 25 9 1.4059 0.9633 -0.8858 26 8 0.0341 4.1066 -0.7554 27 1 -0.3634 -0.9048 -0.4873 28 1 -0.3633 0.0304 1.0273 29 1 -0.3633 0.8745 -0.5399 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.6771 -0.3111 -2.0385 33 1 2.0823 3.9780 1.8774 34 1 2.3821 3.8306 0.1188 35 1 -1.7153 3.7440 1.1604 36 1 -0.4924 3.4755 2.4651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175660.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:35 Heat of formation + Delta-G solvation = 512.237807 kcal Electronic energy + Delta-G solvation = -26422.021163 eV Core-core repulsion = 22521.613807 eV Total energy + Delta-G solvation = -3900.407357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 5.17 seconds Orbital eigenvalues (eV) -65.43721 -49.66709 -48.07379 -42.07207 -36.41871 -35.22996 -34.72610 -33.27050 -31.92716 -29.13768 -27.90286 -26.26246 -25.38374 -23.82518 -22.73907 -21.77220 -20.75737 -20.04044 -19.58939 -18.12095 -17.71461 -17.33120 -17.28141 -16.74731 -16.10206 -15.33844 -15.02445 -14.85839 -14.61253 -14.36517 -14.23792 -13.92192 -13.72557 -13.66973 -13.26784 -13.10295 -12.82910 -12.71896 -12.55130 -12.45685 -12.40469 -12.21941 -12.04473 -11.41594 -10.86113 -10.78842 -10.69588 -9.60560 -8.54650 -8.19166 -6.64190 -6.49986 1.31549 1.42030 1.53011 1.67549 2.24679 2.36905 2.54955 2.83277 3.01004 3.21124 3.42191 3.53165 3.66068 3.73872 3.88233 3.92833 3.98271 4.19715 4.25735 4.35908 4.55618 4.62868 4.78121 4.88032 4.93734 4.97153 5.02588 5.08884 5.11800 5.44334 5.50800 5.52625 5.81016 6.05603 6.53358 6.94749 7.38638 8.63516 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.010102 C = 0.009046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.149695 B = 2771.008295 C = 3094.437534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.479 4.479 3 C 0.466 3.534 4 H -0.475 1.475 5 C -0.491 4.491 6 H 0.107 0.893 7 C 0.024 3.976 8 N -0.887 5.887 9 Si 0.975 3.025 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.258 1.258 13 N -0.482 5.482 14 C 0.014 3.986 15 C 0.046 3.954 16 H 0.179 0.821 17 C -0.131 4.131 18 C -0.017 4.017 19 H 0.194 0.806 20 C 0.013 3.987 21 H 0.120 0.880 22 C 0.077 3.923 23 F -0.217 7.217 24 F -0.173 7.173 25 F 0.636 6.364 26 O -0.384 6.384 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.048 0.952 31 H -0.029 1.029 32 H 0.275 0.725 33 H 0.112 0.888 34 H 0.045 0.955 35 H 0.113 0.887 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 5.668 7.118 12.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.518 4.518 3 C 0.356 3.644 4 H -0.473 1.473 5 C -0.526 4.526 6 H 0.125 0.875 7 C -0.182 4.182 8 N -0.519 5.519 9 Si 0.797 3.203 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.182 1.182 13 N -0.206 5.206 14 C -0.113 4.113 15 C -0.010 4.010 16 H 0.196 0.804 17 C -0.169 4.169 18 C -0.123 4.123 19 H 0.210 0.790 20 C -0.047 4.047 21 H 0.137 0.863 22 C 0.029 3.971 23 F -0.199 7.199 24 F -0.154 7.154 25 F 0.669 6.331 26 O -0.303 6.303 27 H 0.057 0.943 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.066 0.934 31 H -0.013 1.013 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.064 0.936 35 H 0.131 0.869 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.240 5.459 7.196 12.226 hybrid contribution 0.701 -0.610 -1.840 2.061 sum -7.539 4.849 5.356 10.442 Atomic orbital electron populations 1.24933 0.97304 1.01832 1.02330 1.31489 0.97023 1.28125 0.95184 1.17998 0.92177 0.78165 0.76062 1.47349 1.21925 0.90049 1.29583 1.11084 0.87531 1.26191 1.04724 0.93539 0.93740 1.70023 1.37757 1.31012 1.13142 0.85331 0.77067 0.79422 0.78516 1.18418 1.20733 1.18208 1.66049 1.02146 1.09886 1.42535 1.23887 0.97938 0.86471 1.03015 1.25651 0.93734 1.01920 0.79740 0.80419 1.24431 0.99936 0.90576 1.01914 1.27154 0.92118 1.04318 0.88746 0.78994 1.25113 0.96761 0.83499 0.99365 0.86254 1.35678 0.89325 0.88538 0.83533 1.92859 1.82724 1.83975 1.60309 1.92532 1.67872 1.67658 1.87359 1.75419 1.71374 1.39418 1.46889 1.89439 1.89955 1.20905 1.30032 0.94330 0.89236 0.90404 0.93393 1.01310 0.91609 0.87035 0.93608 0.86912 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -8.16 7.27 71.98 0.52 -7.64 16 2 C -0.48 -24.21 4.33 30.59 0.13 -24.08 16 3 C 0.47 23.26 0.76 44.17 0.03 23.30 16 4 H -0.48 -25.19 1.06 -87.10 -0.09 -25.28 16 5 C -0.49 -25.99 7.87 25.60 0.20 -25.79 16 6 H 0.11 5.28 7.61 -2.91 -0.02 5.26 16 7 C 0.02 1.29 5.23 84.65 0.44 1.74 16 8 N -0.89 -50.94 11.54 21.45 0.25 -50.69 16 9 Si 0.97 41.25 29.54 68.60 2.03 43.27 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.48 -19.13 5.11 ******* -6.01 -25.14 16 14 C 0.01 0.49 5.57 87.07 0.49 0.98 16 15 C 0.05 1.28 5.95 33.07 0.20 1.48 16 16 H 0.18 3.44 8.14 -2.39 -0.02 3.42 16 17 C -0.13 -2.91 6.88 33.49 0.23 -2.67 16 18 C -0.02 -0.53 3.55 46.90 0.17 -0.37 16 19 H 0.19 5.51 3.74 -17.74 -0.07 5.44 16 20 C 0.01 0.49 2.76 31.67 0.09 0.58 16 21 H 0.12 3.95 7.97 -2.38 -0.02 3.93 16 22 C 0.08 3.73 2.01 71.98 0.15 3.87 16 23 F -0.22 -10.57 16.97 44.97 0.76 -9.81 16 24 F -0.17 -9.74 14.82 44.97 0.67 -9.07 16 25 F 0.64 32.14 1.93 44.97 0.09 32.23 16 26 O -0.38 -14.53 10.24 -148.98 -1.53 -16.05 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 2.96 6.24 -2.39 -0.01 2.94 16 29 H 0.08 2.93 1.96 -2.87 -0.01 2.93 16 30 H 0.05 2.79 6.09 -2.38 -0.01 2.78 16 31 H -0.03 -1.58 8.04 -2.38 -0.02 -1.59 16 32 H 0.27 14.88 8.31 -92.72 -0.77 14.11 16 33 H 0.11 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.05 2.04 6.85 -2.39 -0.02 2.03 16 35 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.12 2.20 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -69.59 262.26 -0.12 -69.71 By element: Atomic # 1 Polarization: -6.83 SS G_CDS: 0.98 Total: -5.85 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 2.64 Total: -28.61 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -5.76 Total: -75.83 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.53 Total: -16.05 kcal Atomic # 9 Polarization: 11.84 SS G_CDS: 1.52 Total: 13.36 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -69.59 -0.12 -69.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175660.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 581.951 kcal (2) G-P(sol) polarization free energy of solvation -69.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 512.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 512.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.17 seconds