Wall clock time and date at job start Tue Mar 31 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.38264 * 119.99299 * 269.72745 * 5 4 2 7 7 C 1.38220 * 120.02812 * 179.76645 * 6 5 4 8 8 C 1.38238 * 120.01260 * 0.50826 * 7 6 5 9 9 C 1.38338 * 119.98579 * 359.74313 * 8 7 6 10 10 Cl 1.73600 * 120.01542 * 180.02562 * 9 8 7 11 11 C 1.38194 * 119.99506 * 90.00119 * 5 4 2 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.47478 * 111.00277 * 155.96732 * 12 2 1 14 14 C 1.53510 * 87.93712 * 221.29751 * 13 12 2 15 15 C 1.50699 * 114.16927 * 139.67129 * 14 13 12 16 16 H 1.08006 * 120.00134 * 266.15885 * 15 14 13 17 17 C 1.37875 * 120.00078 * 86.16514 * 15 14 13 18 18 N 1.31514 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 89.99875 * 19 17 15 21 21 H 1.48496 * 109.46947 * 209.99958 * 19 17 15 22 22 H 1.48504 * 109.47124 * 329.99639 * 19 17 15 23 23 C 1.47487 * 110.99915 * 60.00195 * 12 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 1.08004 * 119.98516 * 359.97438 * 6 5 4 30 30 H 1.07997 * 120.00053 * 180.25299 * 7 6 5 31 31 H 1.07997 * 120.00802 * 179.72797 * 8 7 6 32 32 H 1.08001 * 120.00358 * 359.95637 * 11 5 4 33 33 H 1.09000 * 113.48037 * 336.07260 * 13 12 2 34 34 H 1.09010 * 113.47432 * 106.53436 * 13 12 2 35 35 H 1.08999 * 114.34873 * 272.37216 * 14 13 12 36 36 H 0.96996 * 119.99798 * 180.02562 * 18 17 15 37 37 H 1.09002 * 113.47090 * 253.47054 * 23 12 2 38 38 H 1.08995 * 113.47275 * 23.87662 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.3291 -1.5848 0.7203 7 6 5.7067 -1.4854 0.7739 8 6 6.2982 -0.4216 1.4292 9 6 5.5111 0.5464 2.0268 10 17 6.2531 1.8830 2.8493 11 6 4.1320 0.4491 1.9682 12 7 2.0197 -0.6925 -1.1993 13 6 3.3815 -0.2465 -1.5482 14 6 2.9447 -0.2470 -3.0199 15 6 3.4686 0.9181 -3.8194 16 1 2.8688 1.8091 -3.9319 17 6 4.7137 0.8465 -4.4072 18 7 5.4443 -0.2384 -4.2699 19 14 5.3629 2.2903 -5.3989 20 1 6.1123 3.2084 -4.5040 21 1 6.2672 1.7914 -6.4658 22 1 4.2251 3.0190 -6.0152 23 6 1.5469 -0.0237 -2.4259 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 3.8675 -2.4187 0.2124 30 1 6.3212 -2.2412 0.3074 31 1 7.3746 -0.3464 1.4749 32 1 3.5169 1.2047 2.4342 33 1 3.6244 0.7456 -1.1676 34 1 4.1512 -0.9849 -1.3235 35 1 3.0673 -1.2052 -3.5247 36 1 6.3204 -0.2886 -4.6832 37 1 0.7617 -0.5734 -2.9449 38 1 1.2992 1.0275 -2.2793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258744284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:37 Heat of formation + Delta-G solvation = 43.408039 kcal Electronic energy + Delta-G solvation = -19888.180856 eV Core-core repulsion = 16950.009420 eV Total energy + Delta-G solvation = -2938.171436 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.89981 -38.47440 -36.31907 -34.36418 -32.35980 -30.93277 -30.52918 -27.30409 -26.46388 -24.52481 -23.82693 -22.43358 -21.47159 -19.84778 -18.63392 -16.81542 -16.44052 -15.66609 -15.29525 -14.89850 -14.54825 -14.15310 -13.85213 -13.53914 -13.43634 -13.09630 -12.57749 -12.23223 -11.94394 -11.68804 -11.60996 -11.39334 -11.21526 -11.17553 -11.01428 -10.96737 -10.82901 -10.58832 -10.48564 -10.15189 -9.70014 -9.12344 -8.95875 -8.59613 -8.45856 -8.23626 -7.86270 -6.03663 -4.06912 1.44164 1.51789 2.30022 3.29615 3.36596 3.39314 3.87785 4.41489 4.82166 4.86839 5.06310 5.23346 5.26255 5.33780 5.45796 5.54294 5.59337 5.69459 5.77272 5.95520 6.00262 6.04256 6.11247 6.17200 6.23579 6.40443 6.44694 6.48034 6.59530 6.63669 6.71720 6.77623 6.86896 7.05975 7.20811 7.24354 7.74899 7.93839 8.13023 8.40379 8.95162 9.57497 11.05878 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.006814 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.919844 B = 4107.917106 C = 5414.515320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 H 0.044 0.956 4 C -0.066 4.066 5 C -0.065 4.065 6 C -0.083 4.083 7 C -0.105 4.105 8 C -0.114 4.114 9 C -0.036 4.036 10 Cl -0.086 7.086 11 C -0.112 4.112 12 N -0.478 5.478 13 C 0.010 3.990 14 C 0.038 3.962 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.069 3.931 18 N -0.885 5.885 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.003 4.003 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -1.281 13.175 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.061 4.061 3 H 0.062 0.938 4 C -0.104 4.104 5 C -0.065 4.065 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.133 4.133 9 C -0.063 4.063 10 Cl -0.057 7.057 11 C -0.131 4.131 12 N -0.201 5.201 13 C -0.119 4.119 14 C 0.019 3.981 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.134 4.134 18 N -0.522 5.522 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.132 4.132 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.732 -1.945 13.364 13.778 hybrid contribution 0.749 1.972 -0.532 2.175 sum -1.982 0.027 12.832 12.985 Atomic orbital electron populations 1.21823 0.94908 1.02073 1.01282 1.22179 0.95000 0.96241 0.92644 0.93807 1.20602 0.90261 1.02139 0.97378 1.19766 0.96126 0.93946 0.96684 1.21163 0.93361 0.99051 0.96501 1.21093 0.95081 0.97894 0.98300 1.20959 0.99834 0.94002 0.98464 1.20787 0.93104 0.91340 1.01045 1.98340 1.82929 1.46578 1.77841 1.20824 0.92436 0.98767 1.01056 1.68922 1.06780 1.44533 0.99905 1.24181 0.90161 0.97606 0.99919 1.20127 0.88563 0.98111 0.91309 1.21024 1.01622 1.00558 1.32108 0.92652 1.24974 0.96961 0.95639 0.95841 1.69956 1.11201 1.26843 1.44231 0.86680 0.78939 0.82911 0.80011 1.20672 1.21136 1.19862 1.23934 1.00842 0.96316 0.92077 0.92165 0.92444 0.93007 0.91281 0.90189 0.85038 0.85215 0.85520 0.85703 0.93394 0.91037 0.91988 0.92978 0.92276 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.09 37.16 0.34 -1.60 16 2 C 0.05 0.78 1.98 -67.72 -0.13 0.64 16 3 H 0.04 0.77 7.52 -51.93 -0.39 0.38 16 4 C -0.07 -0.91 5.03 -27.89 -0.14 -1.05 16 5 C -0.06 -0.98 4.07 -104.63 -0.43 -1.40 16 6 C -0.08 -1.28 6.23 -39.58 -0.25 -1.53 16 7 C -0.11 -1.58 9.92 -39.59 -0.39 -1.97 16 8 C -0.11 -1.69 9.83 -39.54 -0.39 -2.08 16 9 C -0.04 -0.55 6.32 -39.49 -0.25 -0.80 16 10 Cl -0.09 -1.18 28.96 -51.86 -1.50 -2.68 16 11 C -0.11 -1.66 9.49 -39.55 -0.38 -2.04 16 12 N -0.48 -9.11 6.04 -236.61 -1.43 -10.54 16 13 C 0.01 0.22 5.03 -7.56 -0.04 0.18 16 14 C 0.04 0.94 3.77 -91.24 -0.34 0.60 16 15 C -0.51 -14.04 8.82 -34.44 -0.30 -14.35 16 16 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 17 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 18 N -0.88 -25.32 13.26 55.43 0.74 -24.58 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.00 -0.06 6.01 -7.55 -0.05 -0.11 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.81 7.03 -51.93 -0.37 0.45 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 28 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.13 2.02 7.97 -52.48 -0.42 1.61 16 30 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.05 1.15 7.49 -51.93 -0.39 0.76 16 34 H 0.07 1.63 5.43 -51.92 -0.28 1.34 16 35 H 0.06 1.68 8.11 -51.93 -0.42 1.26 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.07 7.61 -51.93 -0.40 0.67 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -27.97 322.22 -10.79 -38.76 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.58 Total: 1.64 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.84 Total: -23.69 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.69 Total: -35.13 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.97 -10.79 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258744284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.170 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds