Wall clock time and date at job start Tue Mar 31 2020 01:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.38264 * 119.99299 * 269.72745 * 5 4 2 7 7 C 1.38220 * 120.02812 * 179.76645 * 6 5 4 8 8 C 1.38238 * 120.01260 * 0.50826 * 7 6 5 9 9 C 1.38338 * 119.98579 * 359.74313 * 8 7 6 10 10 Cl 1.73600 * 120.01542 * 180.02562 * 9 8 7 11 11 C 1.38194 * 119.99506 * 90.00119 * 5 4 2 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.47478 * 111.00277 * 155.96732 * 12 2 1 14 14 C 1.53510 * 87.93712 * 221.29751 * 13 12 2 15 15 C 1.50699 * 114.16927 * 139.67129 * 14 13 12 16 16 H 1.08006 * 120.00134 * 266.15885 * 15 14 13 17 17 C 1.37875 * 120.00078 * 86.16514 * 15 14 13 18 18 N 1.31514 * 119.99937 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00093 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47162 * 89.99875 * 19 17 15 21 21 H 1.48496 * 109.46947 * 209.99958 * 19 17 15 22 22 H 1.48504 * 109.47124 * 329.99639 * 19 17 15 23 23 C 1.47487 * 110.99915 * 60.00195 * 12 2 1 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 1.08004 * 119.98516 * 359.97438 * 6 5 4 30 30 H 1.07997 * 120.00053 * 180.25299 * 7 6 5 31 31 H 1.07997 * 120.00802 * 179.72797 * 8 7 6 32 32 H 1.08001 * 120.00358 * 359.95637 * 11 5 4 33 33 H 1.09000 * 113.48037 * 336.07260 * 13 12 2 34 34 H 1.09010 * 113.47432 * 106.53436 * 13 12 2 35 35 H 1.08999 * 114.34873 * 272.37216 * 14 13 12 36 36 H 0.96996 * 119.99798 * 180.02562 * 18 17 15 37 37 H 1.09002 * 113.47090 * 253.47054 * 23 12 2 38 38 H 1.08995 * 113.47275 * 23.87662 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 6 4.3291 -1.5848 0.7203 7 6 5.7067 -1.4854 0.7739 8 6 6.2982 -0.4216 1.4292 9 6 5.5111 0.5464 2.0268 10 17 6.2531 1.8830 2.8493 11 6 4.1320 0.4491 1.9682 12 7 2.0197 -0.6925 -1.1993 13 6 3.3815 -0.2465 -1.5482 14 6 2.9447 -0.2470 -3.0199 15 6 3.4686 0.9181 -3.8194 16 1 2.8688 1.8091 -3.9319 17 6 4.7137 0.8465 -4.4072 18 7 5.4443 -0.2384 -4.2699 19 14 5.3629 2.2903 -5.3989 20 1 6.1123 3.2084 -4.5040 21 1 6.2672 1.7914 -6.4658 22 1 4.2251 3.0190 -6.0152 23 6 1.5469 -0.0237 -2.4259 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 3.8675 -2.4187 0.2124 30 1 6.3212 -2.2412 0.3074 31 1 7.3746 -0.3464 1.4749 32 1 3.5169 1.2047 2.4342 33 1 3.6244 0.7456 -1.1676 34 1 4.1512 -0.9849 -1.3235 35 1 3.0673 -1.2052 -3.5247 36 1 6.3204 -0.2886 -4.6832 37 1 0.7617 -0.5734 -2.9449 38 1 1.2992 1.0275 -2.2793 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258744284.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:36 Heat of formation + Delta-G solvation = 28.311576 kcal Electronic energy + Delta-G solvation = -19888.835488 eV Core-core repulsion = 16950.009420 eV Total energy + Delta-G solvation = -2938.826068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32388 -39.83976 -37.45926 -35.78713 -34.29195 -32.18342 -31.68956 -29.11967 -27.65141 -26.20300 -25.65207 -23.60436 -22.69225 -21.23437 -20.43094 -18.52745 -17.86513 -17.06956 -16.63539 -16.42744 -16.13574 -15.75842 -15.19630 -14.92873 -14.63354 -14.32809 -14.12245 -13.69094 -13.33412 -13.09124 -12.99850 -12.91846 -12.86311 -12.68240 -12.37220 -12.33891 -12.19315 -12.09382 -11.90721 -11.53479 -11.45347 -11.01780 -10.75885 -10.46599 -9.77423 -9.69874 -9.33060 -8.14120 -6.23466 0.26445 0.35908 1.15625 1.39379 1.40630 1.50153 2.41451 2.70522 3.15461 3.35955 3.72306 3.92347 4.06756 4.12445 4.23844 4.33264 4.40358 4.43742 4.52597 4.57069 4.63289 4.72514 4.79180 4.90083 4.97150 4.98397 5.01305 5.16768 5.22013 5.26812 5.32000 5.37126 5.46311 5.61300 5.64721 5.66657 5.88856 5.92783 6.33643 6.49440 6.84071 7.43605 8.95133 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012576 B = 0.006814 C = 0.005170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.919844 B = 4107.917106 C = 5414.515320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 H 0.029 0.971 4 C -0.060 4.060 5 C -0.073 4.073 6 C -0.097 4.097 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.047 4.047 10 Cl -0.076 7.076 11 C -0.118 4.118 12 N -0.467 5.467 13 C 0.032 3.968 14 C 0.015 3.985 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.020 3.980 18 N -0.915 5.915 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.281 1.281 22 H -0.266 1.266 23 C 0.012 3.988 24 H 0.066 0.934 25 H 0.048 0.952 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.071 0.929 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 -0.491 14.218 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 H 0.047 0.953 4 C -0.098 4.098 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.142 4.142 9 C -0.074 4.074 10 Cl -0.047 7.047 11 C -0.136 4.136 12 N -0.190 5.190 13 C -0.097 4.097 14 C -0.004 4.004 15 C -0.569 4.569 16 H 0.071 0.929 17 C -0.180 4.180 18 N -0.554 5.554 19 Si 0.773 3.227 20 H -0.204 1.204 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.117 4.117 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.696 -1.152 14.414 14.925 hybrid contribution 1.037 1.715 -0.825 2.167 sum -2.659 0.564 13.590 13.859 Atomic orbital electron populations 1.21792 0.92512 1.02861 1.02338 1.22287 0.96896 0.95291 0.91845 0.95281 1.20619 0.89328 1.02569 0.97269 1.19967 0.96979 0.93829 0.96521 1.21260 0.93783 0.99405 0.97014 1.21310 0.95293 0.98404 0.98424 1.21184 1.00697 0.93938 0.98358 1.20973 0.93515 0.91706 1.01167 1.98339 1.82796 1.46027 1.77588 1.21050 0.92612 0.99001 1.00955 1.68869 1.04645 1.44653 1.00873 1.23750 0.91675 0.96300 0.97934 1.20111 0.92054 0.95922 0.92347 1.21345 1.01864 1.01127 1.32522 0.92946 1.25710 0.97273 0.98052 0.96970 1.70067 1.11506 1.28560 1.45252 0.85719 0.78438 0.79893 0.78633 1.20418 1.20686 1.19076 1.23732 0.98814 0.96726 0.92413 0.91484 0.93245 0.90178 0.88332 0.89533 0.85477 0.84233 0.84206 0.84148 0.95313 0.91898 0.95133 0.92962 0.91068 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.09 71.98 0.65 -2.63 16 2 C 0.05 1.37 1.98 44.92 0.09 1.46 16 3 H 0.03 0.97 7.52 -2.39 -0.02 0.96 16 4 C -0.06 -1.51 5.03 29.85 0.15 -1.36 16 5 C -0.07 -2.09 4.07 -19.87 -0.08 -2.18 16 6 C -0.10 -2.97 6.23 22.27 0.14 -2.83 16 7 C -0.12 -3.48 9.92 22.27 0.22 -3.26 16 8 C -0.12 -3.59 9.83 22.29 0.22 -3.37 16 9 C -0.05 -1.38 6.32 22.33 0.14 -1.23 16 10 Cl -0.08 -2.01 28.96 -2.72 -0.08 -2.09 16 11 C -0.12 -3.32 9.49 22.29 0.21 -3.11 16 12 N -0.47 -17.45 6.04 -902.51 -5.45 -22.91 16 13 C 0.03 1.46 5.03 83.57 0.42 1.88 16 14 C 0.01 0.74 3.77 -11.20 -0.04 0.70 16 15 C -0.53 -29.31 8.82 25.60 0.23 -29.08 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 17 C 0.02 1.10 5.46 84.65 0.46 1.56 16 18 N -0.92 -53.32 13.26 21.45 0.28 -53.04 16 19 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 C 0.01 0.49 6.01 83.57 0.50 0.99 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.26 7.03 -2.39 -0.02 1.25 16 26 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.10 1.91 8.08 -2.39 -0.02 1.90 16 28 H 0.09 2.08 8.08 -2.39 -0.02 2.06 16 29 H 0.13 3.94 7.97 -2.91 -0.02 3.91 16 30 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.03 1.39 7.49 -2.39 -0.02 1.37 16 34 H 0.06 2.92 5.43 -2.38 -0.01 2.91 16 35 H 0.03 1.72 8.11 -2.39 -0.02 1.70 16 36 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.05 2.14 7.61 -2.39 -0.02 2.12 16 Total: -1.00 -59.89 322.22 1.13 -58.76 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.03 Total: 15.96 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.31 Total: -42.47 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -5.17 Total: -75.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.09 kcal Total: -59.89 1.13 -58.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258744284.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.073 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds