Wall clock time and date at job start Tue Mar 31 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47032 * 28.72237 * 3 2 1 5 5 C 1.36938 * 119.99786 * 269.51229 * 4 3 2 6 6 H 1.08005 * 119.99671 * 182.54532 * 5 4 3 7 7 C 1.38813 * 120.00121 * 2.54855 * 5 4 3 8 8 N 1.31618 * 119.99763 * 26.94957 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 206.94304 * 7 5 4 10 10 H 1.48508 * 109.46818 * 94.99102 * 9 7 5 11 11 H 1.48495 * 109.47218 * 214.99028 * 9 7 5 12 12 H 1.48502 * 109.47321 * 334.99498 * 9 7 5 13 13 C 1.46500 * 119.99950 * 89.52150 * 4 3 2 14 14 C 1.53000 * 109.47517 * 83.71213 * 13 4 3 15 15 H 1.09004 * 109.47060 * 305.47662 * 14 13 4 16 16 C 1.52994 * 109.47345 * 65.47602 * 14 13 4 17 17 C 1.50704 * 109.47021 * 185.47950 * 14 13 4 18 18 C 1.38204 * 119.97139 * 119.99986 * 17 14 13 19 19 C 1.38479 * 120.01830 * 179.70036 * 18 17 14 20 20 F 1.35105 * 120.00728 * 180.25046 * 19 18 17 21 21 C 1.38416 * 119.97632 * 0.27357 * 19 18 17 22 22 C 1.38423 * 119.95230 * 359.97438 * 21 19 18 23 23 F 1.35091 * 120.01377 * 179.97438 * 22 21 19 24 24 C 1.38210 * 119.97169 * 300.24926 * 17 14 13 25 25 H 4.40633 * 5.51387 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46986 * 268.72006 * 3 2 1 27 27 H 1.09008 * 109.46823 * 148.72322 * 3 2 1 28 28 H 0.96998 * 119.99868 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46988 * 323.70771 * 13 4 3 30 30 H 1.09002 * 109.46967 * 203.71003 * 13 4 3 31 31 H 1.09001 * 109.47365 * 51.19186 * 16 14 13 32 32 H 1.08995 * 109.47324 * 171.19674 * 16 14 13 33 33 H 1.09001 * 109.47315 * 291.19535 * 16 14 13 34 34 H 1.07991 * 119.99251 * 359.97387 * 18 17 14 35 35 H 1.08005 * 120.02334 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99079 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2104 -0.6638 5 6 3.3731 -2.3433 0.0676 6 1 3.7724 -3.2234 -0.4146 7 6 3.1014 -2.3606 1.4288 8 7 2.1736 -1.5697 1.9247 9 14 4.0522 -3.5067 2.5565 10 1 5.1977 -2.7747 3.1545 11 1 3.1571 -3.9930 3.6370 12 1 4.5580 -4.6635 1.7746 13 6 3.3691 -1.2093 -2.1099 14 6 4.7558 -0.6326 -2.4017 15 1 4.8451 0.3506 -1.9396 16 6 5.8263 -1.5640 -1.8295 17 6 4.9441 -0.5063 -3.8916 18 6 5.1871 0.7324 -4.4543 19 6 5.3664 0.8486 -5.8225 20 9 5.6090 2.0589 -6.3717 21 6 5.2964 -0.2754 -6.6271 22 6 5.0478 -1.5148 -6.0630 23 9 4.9788 -2.6126 -6.8472 24 6 4.8683 -1.6286 -4.6947 25 1 -1.0497 -0.0004 0.0000 26 1 3.0093 0.0238 1.0274 27 1 3.0090 0.8792 -0.5336 28 1 1.9835 -1.5820 2.8758 29 1 2.6111 -0.5986 -2.6002 30 1 3.3133 -2.2302 -2.4877 31 1 5.6418 -2.5826 -2.1709 32 1 6.8097 -1.2395 -2.1694 33 1 5.7899 -1.5337 -0.7405 34 1 5.2417 1.6092 -3.8263 35 1 5.4357 -0.1856 -7.6944 36 1 4.6739 -2.5954 -4.2544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333872879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:35 Heat of formation + Delta-G solvation = 10.634293 kcal Electronic energy + Delta-G solvation = -21144.633142 eV Core-core repulsion = 17653.243850 eV Total energy + Delta-G solvation = -3491.389293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.04908 -49.01496 -39.31914 -36.60673 -34.01085 -31.58274 -30.90732 -30.33337 -29.12126 -26.25369 -26.04100 -23.73631 -22.84303 -21.66370 -19.82567 -17.81539 -17.38016 -17.09482 -16.44911 -16.28969 -15.99933 -15.68189 -15.33758 -15.08077 -14.39748 -14.09129 -13.95019 -13.57455 -13.23024 -12.85081 -12.62351 -12.39146 -11.95829 -11.79894 -11.64904 -11.40716 -11.29210 -10.81784 -10.71596 -10.65220 -10.31420 -10.25931 -9.85239 -9.05427 -8.93639 -8.78961 -8.76206 -8.34025 -7.14998 -5.86761 -3.15864 0.96586 0.99580 3.34165 3.37425 3.43502 3.45008 3.80103 4.10614 4.35699 4.36031 4.49106 4.57225 4.79825 4.92234 5.17802 5.24373 5.46628 5.52253 5.71006 5.76975 5.81855 5.87487 5.94969 6.00262 6.07682 6.22120 6.34573 6.47361 6.56348 6.64882 6.78104 6.82719 6.93853 7.33634 7.41886 7.71813 8.18441 9.05805 9.14718 9.73301 10.16216 11.17914 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004631 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.432738 B = 6045.054910 C = 6641.848414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 C -0.096 4.096 3 C 0.257 3.743 4 N -0.586 5.586 5 C -0.258 4.258 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.160 3.840 14 C -0.079 4.079 15 H 0.079 0.921 16 C -0.129 4.129 17 C 0.000 4.000 18 C -0.165 4.165 19 C 0.128 3.872 20 F -0.136 7.136 21 C -0.208 4.208 22 C 0.130 3.870 23 F -0.135 7.135 24 C -0.159 4.159 25 H 0.190 0.810 26 H 0.113 0.887 27 H 0.035 0.965 28 H 0.254 0.746 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 3.884 -12.537 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.099 4.099 3 C 0.132 3.868 4 N -0.305 5.305 5 C -0.386 4.386 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.214 1.214 11 H -0.221 1.221 12 H -0.205 1.205 13 C 0.032 3.968 14 C -0.100 4.100 15 H 0.098 0.902 16 C -0.186 4.186 17 C -0.001 4.001 18 C -0.184 4.184 19 C 0.109 3.891 20 F -0.115 7.115 21 C -0.228 4.228 22 C 0.110 3.890 23 F -0.113 7.113 24 C -0.178 4.178 25 H 0.207 0.793 26 H 0.130 0.870 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.414 3.860 -12.395 14.480 hybrid contribution 0.057 -0.677 0.359 0.769 sum 6.470 3.183 -12.036 14.031 Atomic orbital electron populations 1.24252 0.95438 1.05834 1.07101 1.24499 0.95443 0.95311 0.94597 1.18262 0.82570 0.86362 0.99636 1.44151 1.74424 1.10162 1.01746 1.19253 1.36996 0.92327 0.90016 0.90165 1.24755 0.98052 0.99152 0.97606 1.70223 1.28346 1.41884 1.12740 0.86425 0.80201 0.80290 0.80986 1.21442 1.22093 1.20509 1.20795 0.91566 0.98850 0.85605 1.21060 1.00088 1.01605 0.87231 0.90223 1.21698 0.95635 0.98178 1.03102 1.19869 0.92279 0.90842 0.97158 1.21187 1.04954 0.99379 0.92854 1.17271 1.00531 0.79981 0.91349 1.91511 1.91690 1.42133 1.86121 1.20888 1.09469 0.91025 1.01398 1.17287 1.00800 0.82334 0.88561 1.91513 1.93675 1.51834 1.74325 1.21151 1.04360 1.01137 0.91127 0.79269 0.86988 0.94711 0.93511 0.94445 0.92715 0.93102 0.94368 0.90055 0.84129 0.83991 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.94 19.25 29.55 0.57 -6.37 16 2 C -0.10 -2.28 11.95 -37.12 -0.44 -2.73 16 3 C 0.26 5.79 5.48 -6.83 -0.04 5.76 16 4 N -0.59 -13.08 2.30 -176.57 -0.41 -13.49 16 5 C -0.26 -6.38 8.41 -15.06 -0.13 -6.51 16 6 H 0.08 1.95 7.93 -52.48 -0.42 1.54 16 7 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 8 N -0.89 -24.21 9.25 55.49 0.51 -23.69 16 9 Si 0.89 20.54 29.63 -169.99 -5.04 15.50 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 C 0.16 2.91 4.84 -4.04 -0.02 2.89 16 14 C -0.08 -1.18 2.76 -91.77 -0.25 -1.43 16 15 H 0.08 1.20 7.77 -51.93 -0.40 0.79 16 16 C -0.13 -1.96 8.30 37.15 0.31 -1.65 16 17 C 0.00 0.00 4.77 -104.64 -0.50 -0.50 16 18 C -0.16 -2.03 9.65 -39.50 -0.38 -2.42 16 19 C 0.13 1.56 7.30 -39.43 -0.29 1.27 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.63 16 21 C -0.21 -2.42 10.01 -39.45 -0.39 -2.82 16 22 C 0.13 1.62 7.30 -39.43 -0.29 1.33 16 23 F -0.13 -1.73 17.27 2.25 0.04 -1.69 16 24 C -0.16 -2.06 8.82 -39.51 -0.35 -2.40 16 25 H 0.19 3.58 7.80 -54.10 -0.42 3.16 16 26 H 0.11 2.79 5.89 -51.93 -0.31 2.48 16 27 H 0.03 0.68 7.97 -51.92 -0.41 0.27 16 28 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.04 0.69 8.12 -51.93 -0.42 0.26 16 30 H 0.05 1.00 7.38 -51.93 -0.38 0.62 16 31 H 0.05 0.76 7.69 -51.93 -0.40 0.36 16 32 H 0.04 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.08 1.43 7.29 -51.93 -0.38 1.05 16 34 H 0.14 1.55 7.94 -52.49 -0.42 1.14 16 35 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.81 7.29 -52.49 -0.38 1.42 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -27.26 318.38 -6.66 -33.92 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.32 Total: 1.87 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -2.29 Total: -15.59 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.11 Total: -37.18 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.26 -6.66 -33.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333872879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.558 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds