Wall clock time and date at job start Tue Mar 31 2020 01:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47032 * 28.72237 * 3 2 1 5 5 C 1.36938 * 119.99786 * 269.51229 * 4 3 2 6 6 H 1.08005 * 119.99671 * 182.54532 * 5 4 3 7 7 C 1.38813 * 120.00121 * 2.54855 * 5 4 3 8 8 N 1.31618 * 119.99763 * 26.94957 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 206.94304 * 7 5 4 10 10 H 1.48508 * 109.46818 * 94.99102 * 9 7 5 11 11 H 1.48495 * 109.47218 * 214.99028 * 9 7 5 12 12 H 1.48502 * 109.47321 * 334.99498 * 9 7 5 13 13 C 1.46500 * 119.99950 * 89.52150 * 4 3 2 14 14 C 1.53000 * 109.47517 * 83.71213 * 13 4 3 15 15 H 1.09004 * 109.47060 * 305.47662 * 14 13 4 16 16 C 1.52994 * 109.47345 * 65.47602 * 14 13 4 17 17 C 1.50704 * 109.47021 * 185.47950 * 14 13 4 18 18 C 1.38204 * 119.97139 * 119.99986 * 17 14 13 19 19 C 1.38479 * 120.01830 * 179.70036 * 18 17 14 20 20 F 1.35105 * 120.00728 * 180.25046 * 19 18 17 21 21 C 1.38416 * 119.97632 * 0.27357 * 19 18 17 22 22 C 1.38423 * 119.95230 * 359.97438 * 21 19 18 23 23 F 1.35091 * 120.01377 * 179.97438 * 22 21 19 24 24 C 1.38210 * 119.97169 * 300.24926 * 17 14 13 25 25 H 4.40633 * 5.51387 * 179.97438 * 4 1 2 26 26 H 1.09001 * 109.46986 * 268.72006 * 3 2 1 27 27 H 1.09008 * 109.46823 * 148.72322 * 3 2 1 28 28 H 0.96998 * 119.99868 * 179.97438 * 8 7 5 29 29 H 1.08993 * 109.46988 * 323.70771 * 13 4 3 30 30 H 1.09002 * 109.46967 * 203.71003 * 13 4 3 31 31 H 1.09001 * 109.47365 * 51.19186 * 16 14 13 32 32 H 1.08995 * 109.47324 * 171.19674 * 16 14 13 33 33 H 1.09001 * 109.47315 * 291.19535 * 16 14 13 34 34 H 1.07991 * 119.99251 * 359.97387 * 18 17 14 35 35 H 1.08005 * 120.02334 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99079 * 0.02562 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2104 -0.6638 5 6 3.3731 -2.3433 0.0676 6 1 3.7724 -3.2234 -0.4146 7 6 3.1014 -2.3606 1.4288 8 7 2.1736 -1.5697 1.9247 9 14 4.0522 -3.5067 2.5565 10 1 5.1977 -2.7747 3.1545 11 1 3.1571 -3.9930 3.6370 12 1 4.5580 -4.6635 1.7746 13 6 3.3691 -1.2093 -2.1099 14 6 4.7558 -0.6326 -2.4017 15 1 4.8451 0.3506 -1.9396 16 6 5.8263 -1.5640 -1.8295 17 6 4.9441 -0.5063 -3.8916 18 6 5.1871 0.7324 -4.4543 19 6 5.3664 0.8486 -5.8225 20 9 5.6090 2.0589 -6.3717 21 6 5.2964 -0.2754 -6.6271 22 6 5.0478 -1.5148 -6.0630 23 9 4.9788 -2.6126 -6.8472 24 6 4.8683 -1.6286 -4.6947 25 1 -1.0497 -0.0004 0.0000 26 1 3.0093 0.0238 1.0274 27 1 3.0090 0.8792 -0.5336 28 1 1.9835 -1.5820 2.8758 29 1 2.6111 -0.5986 -2.6002 30 1 3.3133 -2.2302 -2.4877 31 1 5.6418 -2.5826 -2.1709 32 1 6.8097 -1.2395 -2.1694 33 1 5.7899 -1.5337 -0.7405 34 1 5.2417 1.6092 -3.8263 35 1 5.4357 -0.1856 -7.6944 36 1 4.6739 -2.5954 -4.2544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333872879.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:35 Heat of formation + Delta-G solvation = -0.365538 kcal Electronic energy + Delta-G solvation = -21145.110131 eV Core-core repulsion = 17653.243850 eV Total energy + Delta-G solvation = -3491.866281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -50.00820 -49.98607 -40.39255 -38.16724 -35.40787 -33.42796 -32.51003 -31.32531 -30.31262 -27.99288 -27.63977 -24.98317 -23.86669 -23.16906 -21.09380 -19.40570 -18.62533 -18.23829 -17.93550 -17.35573 -17.00548 -16.93474 -16.56830 -16.30361 -15.64223 -15.58870 -15.29006 -15.16852 -14.64935 -14.31670 -13.81895 -13.65010 -13.25159 -13.13699 -12.91942 -12.86545 -12.77137 -12.60844 -12.22675 -12.07066 -11.93169 -11.70256 -11.50981 -10.83892 -10.67095 -10.20985 -9.89011 -9.73892 -8.95977 -7.80850 -5.08892 -0.01096 0.01416 1.50555 1.55277 1.60780 2.30463 2.39577 2.54992 2.62429 2.83357 3.28203 3.38033 3.51820 3.83469 3.88780 4.06315 4.13374 4.19320 4.24136 4.46300 4.54534 4.80087 4.82924 4.91388 4.93647 5.02318 5.04867 5.10378 5.16956 5.32189 5.52287 5.58515 5.65329 5.66879 5.77727 5.80561 6.30560 7.15666 7.35241 7.90068 8.29862 9.22502 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.004631 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.432738 B = 6045.054910 C = 6641.848414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.132 4.132 3 C 0.259 3.741 4 N -0.597 5.597 5 C -0.247 4.247 6 H 0.082 0.918 7 C -0.048 4.048 8 N -0.916 5.916 9 Si 0.946 3.054 10 H -0.288 1.288 11 H -0.308 1.308 12 H -0.272 1.272 13 C 0.160 3.840 14 C -0.063 4.063 15 H 0.082 0.918 16 C -0.124 4.124 17 C -0.008 4.008 18 C -0.160 4.160 19 C 0.125 3.875 20 F -0.136 7.136 21 C -0.197 4.197 22 C 0.123 3.877 23 F -0.137 7.137 24 C -0.160 4.160 25 H 0.220 0.780 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.245 0.755 29 H 0.037 0.963 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 4.181 -14.205 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.135 4.135 3 C 0.134 3.866 4 N -0.316 5.316 5 C -0.376 4.376 6 H 0.099 0.901 7 C -0.243 4.243 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.215 1.215 11 H -0.236 1.236 12 H -0.197 1.197 13 C 0.034 3.966 14 C -0.084 4.084 15 H 0.100 0.900 16 C -0.181 4.181 17 C -0.009 4.009 18 C -0.179 4.179 19 C 0.105 3.895 20 F -0.114 7.114 21 C -0.217 4.217 22 C 0.104 3.896 23 F -0.116 7.116 24 C -0.179 4.179 25 H 0.237 0.763 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.188 4.153 -14.110 16.370 hybrid contribution -0.186 -0.752 0.738 1.070 sum 7.001 3.401 -13.372 15.472 Atomic orbital electron populations 1.25073 0.96517 1.04835 1.05989 1.25016 0.96451 0.96345 0.95661 1.18168 0.82294 0.87462 0.98723 1.44300 1.74640 1.09442 1.03252 1.19476 1.34973 0.92946 0.90213 0.90057 1.25296 0.99108 1.01022 0.98830 1.70370 1.29996 1.43920 1.12021 0.85564 0.78684 0.79041 0.79127 1.21534 1.23587 1.19664 1.20913 0.93432 0.99012 0.83279 1.20735 0.97696 1.01283 0.88705 0.89958 1.21623 0.96852 0.98362 1.01305 1.19586 0.93978 0.91461 0.95875 1.21300 1.03924 0.99380 0.93255 1.17272 1.00755 0.80140 0.91316 1.91519 1.91701 1.42113 1.86072 1.21093 1.07714 0.90361 1.02486 1.17296 1.01318 0.82626 0.88367 1.91510 1.93752 1.52017 1.74303 1.21192 1.04119 1.01106 0.91514 0.76318 0.89619 0.91970 0.94565 0.94491 0.92996 0.93171 0.92360 0.92678 0.82838 0.81960 0.83863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -13.53 19.25 74.32 1.43 -12.10 16 2 C -0.13 -6.28 11.95 31.12 0.37 -5.91 16 3 C 0.26 11.69 5.48 84.57 0.46 12.16 16 4 N -0.60 -26.49 2.30 -712.55 -1.64 -28.13 16 5 C -0.25 -12.21 8.41 84.03 0.71 -11.50 16 6 H 0.08 3.93 7.93 -2.91 -0.02 3.91 16 7 C -0.05 -2.48 4.94 84.86 0.42 -2.06 16 8 N -0.92 -50.91 9.25 21.65 0.20 -50.71 16 9 Si 0.95 42.84 29.63 68.60 2.03 44.87 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.31 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.16 5.68 4.84 86.38 0.42 6.10 16 14 C -0.06 -1.81 2.76 -11.54 -0.03 -1.84 16 15 H 0.08 2.32 7.77 -2.39 -0.02 2.30 16 16 C -0.12 -3.60 8.30 71.98 0.60 -3.01 16 17 C -0.01 -0.19 4.77 -19.88 -0.09 -0.29 16 18 C -0.16 -3.53 9.65 22.32 0.22 -3.32 16 19 C 0.12 2.68 7.30 22.37 0.16 2.85 16 20 F -0.14 -2.96 17.27 44.97 0.78 -2.18 16 21 C -0.20 -4.03 10.01 22.36 0.22 -3.80 16 22 C 0.12 2.80 7.30 22.37 0.16 2.97 16 23 F -0.14 -3.24 17.27 44.97 0.78 -2.46 16 24 C -0.16 -3.85 8.82 22.32 0.20 -3.65 16 25 H 0.22 7.88 7.80 -4.43 -0.03 7.85 16 26 H 0.09 4.36 5.89 -2.39 -0.01 4.35 16 27 H 0.06 2.39 7.97 -2.38 -0.02 2.38 16 28 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 30 H 0.05 1.85 7.38 -2.39 -0.02 1.84 16 31 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 32 H 0.06 1.44 8.12 -2.39 -0.02 1.42 16 33 H 0.05 1.89 7.29 -2.39 -0.02 1.88 16 34 H 0.15 2.96 7.94 -2.92 -0.02 2.94 16 35 H 0.16 2.62 8.06 -2.91 -0.02 2.59 16 36 H 0.14 3.40 7.29 -2.91 -0.02 3.38 16 Total: -1.00 -57.34 318.38 8.47 -48.86 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.08 Total: 13.15 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 5.25 Total: -23.40 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.44 Total: -78.84 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.55 Total: -4.65 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -57.34 8.47 -48.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333872879.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.497 kcal (2) G-P(sol) polarization free energy of solvation -57.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds