Wall clock time and date at job start Tue Mar 31 2020 01:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47412 * 2 1 4 4 C 1.50702 * 109.47080 * 239.99667 * 2 1 3 5 5 H 1.08004 * 120.00273 * 268.29680 * 4 2 1 6 6 C 1.37880 * 119.99842 * 88.29222 * 4 2 1 7 7 N 1.31517 * 120.00134 * 181.92820 * 6 4 2 8 8 Si 1.86800 * 119.99769 * 1.93253 * 6 4 2 9 9 H 1.48503 * 109.46945 * 94.87351 * 8 6 4 10 10 H 1.48502 * 109.46943 * 214.86876 * 8 6 4 11 11 H 1.48493 * 109.47275 * 334.86996 * 8 6 4 12 12 N 1.46502 * 109.47233 * 120.00157 * 2 1 3 13 13 C 1.46501 * 120.00110 * 60.06868 * 12 2 1 14 14 C 1.34773 * 119.99799 * 240.06975 * 12 2 1 15 15 O 1.21289 * 120.00019 * 175.45717 * 14 12 2 16 16 C 1.50701 * 120.00362 * 355.73831 * 14 12 2 17 17 C 1.53003 * 112.84896 * 75.41689 * 16 14 12 18 18 F 1.39895 * 109.47006 * 49.90352 * 17 16 14 19 19 F 1.39899 * 109.47239 * 169.90803 * 17 16 14 20 20 F 1.39905 * 109.47185 * 289.90332 * 17 16 14 21 21 C 1.53781 * 113.61260 * 304.22413 * 16 14 12 22 22 C 1.54052 * 86.98499 * 270.83512 * 21 16 14 23 23 C 1.53772 * 113.61739 * 206.61628 * 16 14 12 24 24 H 1.08995 * 109.46635 * 299.24928 * 1 2 3 25 25 H 1.08996 * 109.46901 * 59.24487 * 1 2 3 26 26 H 1.09000 * 109.47047 * 179.25222 * 1 2 3 27 27 H 0.96998 * 120.00061 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46948 * 264.98716 * 13 12 2 29 29 H 1.08999 * 109.47085 * 24.98296 * 13 12 2 30 30 H 1.09000 * 109.46908 * 144.98809 * 13 12 2 31 31 H 1.09002 * 113.61154 * 25.42873 * 21 16 14 32 32 H 1.08998 * 113.61626 * 156.33223 * 21 16 14 33 33 H 1.08993 * 113.61905 * 220.01983 * 22 21 16 34 34 H 1.09008 * 113.68777 * 89.12343 * 22 21 16 35 35 H 1.09001 * 113.61918 * 203.66436 * 23 16 14 36 36 H 1.08999 * 113.61498 * 334.56116 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2386 -1.7701 -1.1959 6 6 2.2286 -0.0078 -2.4004 7 7 2.6307 -0.6346 -3.4844 8 14 1.9235 1.8346 -2.4457 9 1 3.2016 2.5538 -2.2124 10 1 1.3777 2.2134 -3.7738 11 1 0.9488 2.2010 -1.3871 12 7 2.0184 -0.6906 1.1962 13 6 1.6658 -2.0937 1.4272 14 6 2.7921 -0.0352 2.0840 15 8 3.1283 -0.5803 3.1140 16 6 3.2343 1.3772 1.7999 17 6 2.1162 2.4018 2.0022 18 9 1.5172 2.1982 3.2499 19 9 2.6515 3.6932 1.9469 20 9 1.1575 2.2510 0.9944 21 6 3.9779 1.5327 0.4629 22 6 5.2723 1.2273 1.2404 23 6 4.5535 1.7604 2.4910 24 1 -0.3632 0.5021 0.8966 25 1 -0.3633 0.5255 -0.8831 26 1 -0.3633 -1.0276 -0.0134 27 1 2.7691 -0.1402 -4.3074 28 1 0.7889 -2.1464 2.0726 29 1 1.4449 -2.5745 0.4743 30 1 2.5011 -2.6040 1.9068 31 1 3.7184 0.7708 -0.2722 32 1 3.9404 2.5437 0.0574 33 1 6.1214 1.8369 0.9316 34 1 5.5109 0.1649 1.2936 35 1 4.6731 2.8337 2.6391 36 1 4.7583 1.1825 3.3921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339290964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:03 Heat of formation + Delta-G solvation = -146.330050 kcal Electronic energy + Delta-G solvation = -24946.550306 eV Core-core repulsion = 21017.585304 eV Total energy + Delta-G solvation = -3928.965002 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.02560 -47.54273 -47.42105 -40.38061 -37.24688 -35.86320 -32.64161 -30.13105 -28.98381 -26.67898 -25.72142 -25.12773 -23.39913 -21.87219 -20.36144 -18.60887 -18.19582 -18.09975 -17.89491 -16.95576 -15.88441 -15.41396 -15.06865 -14.55170 -14.38710 -14.12405 -14.02683 -13.83985 -13.72133 -13.56429 -13.31961 -12.75944 -12.50933 -12.34477 -12.28444 -12.18620 -12.09584 -11.69304 -11.41889 -11.15725 -10.89469 -10.70699 -10.52519 -10.33253 -10.15175 -9.94036 -9.50307 -9.19548 -8.76545 -7.86285 -6.31717 -4.34426 2.55991 3.07674 3.19010 3.22004 3.26534 3.48570 3.93447 4.04063 4.18889 4.26023 4.64591 4.80002 4.83225 4.89832 5.07917 5.43495 5.69836 5.85281 5.95925 6.03846 6.05844 6.08397 6.10417 6.34771 6.39162 6.40018 6.45766 6.51989 6.75503 6.87871 7.25130 7.47282 7.89469 8.35932 8.59977 8.73420 9.27567 10.80022 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.010602 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.130084 B = 2640.390786 C = 2969.967314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.190 3.810 3 H 0.082 0.918 4 C -0.530 4.530 5 H 0.082 0.918 6 C 0.083 3.917 7 N -0.885 5.885 8 Si 0.843 3.157 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.246 1.246 12 N -0.573 5.573 13 C 0.093 3.907 14 C 0.537 3.463 15 O -0.548 6.548 16 C -0.161 4.161 17 C 0.463 3.537 18 F -0.179 7.179 19 F -0.180 7.180 20 F -0.160 7.160 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.111 4.111 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.268 0.732 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 5.947 7.991 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.089 3.911 3 H 0.100 0.900 4 C -0.568 4.568 5 H 0.100 0.900 6 C -0.121 4.121 7 N -0.521 5.521 8 Si 0.668 3.332 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.170 1.170 12 N -0.302 5.302 13 C -0.050 4.050 14 C 0.321 3.679 15 O -0.427 6.427 16 C -0.166 4.166 17 C 0.409 3.591 18 F -0.160 7.160 19 F -0.161 7.161 20 F -0.141 7.141 21 C -0.181 4.181 22 C -0.167 4.167 23 C -0.149 4.149 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.166 5.676 8.295 10.118 hybrid contribution -0.567 1.192 -0.364 1.369 sum 0.600 6.868 7.931 10.509 Atomic orbital electron populations 1.22269 0.98001 1.00832 0.99635 1.20256 0.91872 0.95637 0.83301 0.90035 1.21150 1.45152 0.97674 0.92796 0.90019 1.24877 0.93964 0.97881 0.95367 1.69865 1.44953 1.36268 1.01044 0.87451 0.80170 0.86629 0.78920 1.19352 1.20871 1.16981 1.48169 1.47364 1.12035 1.22669 1.21522 0.99687 0.81809 1.01945 1.19052 0.79427 0.85702 0.83677 1.90627 1.57910 1.68312 1.25850 1.23464 0.94188 0.93873 1.05042 1.20164 0.83354 0.81398 0.74204 1.93189 1.85152 1.94849 1.42828 1.93135 1.86065 1.40740 1.96154 1.93212 1.66264 1.95006 1.59645 1.23609 0.94554 1.05314 0.94579 1.22787 0.96754 1.02291 0.94837 1.22939 0.90109 1.02371 0.99484 0.95271 0.92377 0.93098 0.92198 0.93734 0.89768 0.91956 0.85628 0.88841 0.90210 0.89218 0.88421 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.06 37.16 0.30 -2.73 16 2 C 0.19 4.13 0.47 -69.08 -0.03 4.10 16 3 H 0.08 1.74 0.25 -51.93 -0.01 1.73 16 4 C -0.53 -13.22 7.64 -34.44 -0.26 -13.48 16 5 H 0.08 2.23 6.93 -52.48 -0.36 1.87 16 6 C 0.08 2.16 5.26 -17.82 -0.09 2.07 16 7 N -0.88 -24.68 13.96 55.43 0.77 -23.90 16 8 Si 0.84 19.05 24.78 -169.99 -4.21 14.84 16 9 H -0.27 -5.78 7.06 56.52 0.40 -5.38 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.25 -5.30 4.93 56.52 0.28 -5.02 16 12 N -0.57 -11.86 2.75 -175.26 -0.48 -12.34 16 13 C 0.09 1.72 9.34 59.85 0.56 2.28 16 14 C 0.54 10.93 5.95 -10.99 -0.07 10.86 16 15 O -0.55 -11.91 15.81 5.55 0.09 -11.82 16 16 C -0.16 -2.90 0.48 -154.85 -0.07 -2.97 16 17 C 0.46 8.26 2.64 37.16 0.10 8.36 16 18 F -0.18 -3.22 16.91 2.25 0.04 -3.18 16 19 F -0.18 -2.88 15.75 2.25 0.04 -2.84 16 20 F -0.16 -3.09 10.90 2.25 0.02 -3.07 16 21 C -0.14 -2.55 4.91 -25.78 -0.13 -2.68 16 22 C -0.13 -1.92 7.81 -25.78 -0.20 -2.13 16 23 C -0.11 -1.65 7.02 -25.92 -0.18 -1.84 16 24 H 0.03 0.55 7.31 -51.93 -0.38 0.17 16 25 H 0.06 1.19 6.86 -51.93 -0.36 0.84 16 26 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.56 6.66 -51.93 -0.35 1.21 16 30 H 0.06 1.12 7.65 -51.93 -0.40 0.72 16 31 H 0.13 2.62 4.24 -51.93 -0.22 2.40 16 32 H 0.09 1.56 7.77 -51.93 -0.40 1.16 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 35 H 0.10 1.24 7.17 -51.93 -0.37 0.87 16 36 H 0.09 1.42 7.41 -51.93 -0.38 1.04 16 LS Contribution 282.22 15.07 4.25 4.25 Total: -1.00 -27.85 282.22 -3.73 -31.58 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.16 Total: 4.65 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -0.08 Total: 1.83 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.29 Total: -36.25 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 9 Polarization: -9.19 SS G_CDS: 0.10 Total: -9.09 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.21 Total: 14.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.85 -3.73 -31.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.749 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds