Wall clock time and date at job start Tue Mar 31 2020 01:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47412 * 2 1 4 4 C 1.50702 * 109.47080 * 239.99667 * 2 1 3 5 5 H 1.08004 * 120.00273 * 268.29680 * 4 2 1 6 6 C 1.37880 * 119.99842 * 88.29222 * 4 2 1 7 7 N 1.31517 * 120.00134 * 181.92820 * 6 4 2 8 8 Si 1.86800 * 119.99769 * 1.93253 * 6 4 2 9 9 H 1.48503 * 109.46945 * 94.87351 * 8 6 4 10 10 H 1.48502 * 109.46943 * 214.86876 * 8 6 4 11 11 H 1.48493 * 109.47275 * 334.86996 * 8 6 4 12 12 N 1.46502 * 109.47233 * 120.00157 * 2 1 3 13 13 C 1.46501 * 120.00110 * 60.06868 * 12 2 1 14 14 C 1.34773 * 119.99799 * 240.06975 * 12 2 1 15 15 O 1.21289 * 120.00019 * 175.45717 * 14 12 2 16 16 C 1.50701 * 120.00362 * 355.73831 * 14 12 2 17 17 C 1.53003 * 112.84896 * 75.41689 * 16 14 12 18 18 F 1.39895 * 109.47006 * 49.90352 * 17 16 14 19 19 F 1.39899 * 109.47239 * 169.90803 * 17 16 14 20 20 F 1.39905 * 109.47185 * 289.90332 * 17 16 14 21 21 C 1.53781 * 113.61260 * 304.22413 * 16 14 12 22 22 C 1.54052 * 86.98499 * 270.83512 * 21 16 14 23 23 C 1.53772 * 113.61739 * 206.61628 * 16 14 12 24 24 H 1.08995 * 109.46635 * 299.24928 * 1 2 3 25 25 H 1.08996 * 109.46901 * 59.24487 * 1 2 3 26 26 H 1.09000 * 109.47047 * 179.25222 * 1 2 3 27 27 H 0.96998 * 120.00061 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.46948 * 264.98716 * 13 12 2 29 29 H 1.08999 * 109.47085 * 24.98296 * 13 12 2 30 30 H 1.09000 * 109.46908 * 144.98809 * 13 12 2 31 31 H 1.09002 * 113.61154 * 25.42873 * 21 16 14 32 32 H 1.08998 * 113.61626 * 156.33223 * 21 16 14 33 33 H 1.08993 * 113.61905 * 220.01983 * 22 21 16 34 34 H 1.09008 * 113.68777 * 89.12343 * 22 21 16 35 35 H 1.09001 * 113.61918 * 203.66436 * 23 16 14 36 36 H 1.08999 * 113.61498 * 334.56116 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2386 -1.7701 -1.1959 6 6 2.2286 -0.0078 -2.4004 7 7 2.6307 -0.6346 -3.4844 8 14 1.9235 1.8346 -2.4457 9 1 3.2016 2.5538 -2.2124 10 1 1.3777 2.2134 -3.7738 11 1 0.9488 2.2010 -1.3871 12 7 2.0184 -0.6906 1.1962 13 6 1.6658 -2.0937 1.4272 14 6 2.7921 -0.0352 2.0840 15 8 3.1283 -0.5803 3.1140 16 6 3.2343 1.3772 1.7999 17 6 2.1162 2.4018 2.0022 18 9 1.5172 2.1982 3.2499 19 9 2.6515 3.6932 1.9469 20 9 1.1575 2.2510 0.9944 21 6 3.9779 1.5327 0.4629 22 6 5.2723 1.2273 1.2404 23 6 4.5535 1.7604 2.4910 24 1 -0.3632 0.5021 0.8966 25 1 -0.3633 0.5255 -0.8831 26 1 -0.3633 -1.0276 -0.0134 27 1 2.7691 -0.1402 -4.3074 28 1 0.7889 -2.1464 2.0726 29 1 1.4449 -2.5745 0.4743 30 1 2.5011 -2.6040 1.9068 31 1 3.7184 0.7708 -0.2722 32 1 3.9404 2.5437 0.0574 33 1 6.1214 1.8369 0.9316 34 1 5.5109 0.1649 1.2936 35 1 4.6731 2.8337 2.6391 36 1 4.7583 1.1825 3.3921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339290964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:03 Heat of formation + Delta-G solvation = -163.185886 kcal Electronic energy + Delta-G solvation = -24947.281230 eV Core-core repulsion = 21017.585304 eV Total energy + Delta-G solvation = -3929.695926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.40943 -48.94243 -48.77961 -41.86426 -38.68195 -37.56437 -34.56562 -31.87666 -30.35703 -28.15274 -27.41340 -26.63880 -24.78988 -23.49651 -21.83410 -20.04555 -19.63946 -19.49288 -19.44930 -18.74426 -17.42811 -17.02514 -16.58835 -16.16423 -15.86498 -15.56856 -15.47215 -15.24396 -15.16145 -14.97753 -14.85578 -14.39886 -14.09553 -13.87652 -13.84290 -13.61030 -13.41991 -13.25777 -13.08949 -12.80530 -12.55462 -12.20493 -11.98326 -11.75297 -11.72548 -11.51996 -11.22971 -10.90888 -10.68482 -9.53633 -8.31872 -6.37968 1.07341 1.29691 1.38868 1.46033 1.73880 1.97361 2.30217 2.58632 2.65437 2.83233 3.05207 3.31507 3.41610 3.49384 3.64009 4.18162 4.33234 4.49656 4.51607 4.57060 4.65970 4.73429 4.78179 4.85173 4.88281 4.96054 4.99954 5.07063 5.23271 5.25332 5.49908 5.70984 6.05189 6.55835 6.68008 7.00419 7.28353 8.83386 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.010602 C = 0.009425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.130084 B = 2640.390786 C = 2969.967314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.194 3.806 3 H 0.093 0.907 4 C -0.522 4.522 5 H 0.045 0.955 6 C 0.039 3.961 7 N -0.934 5.934 8 Si 0.888 3.112 9 H -0.248 1.248 10 H -0.289 1.289 11 H -0.229 1.229 12 N -0.583 5.583 13 C 0.092 3.908 14 C 0.533 3.467 15 O -0.565 6.565 16 C -0.172 4.172 17 C 0.466 3.534 18 F -0.181 7.181 19 F -0.165 7.165 20 F -0.171 7.171 21 C -0.151 4.151 22 C -0.121 4.121 23 C -0.098 4.098 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.268 0.732 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 8.106 9.232 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.093 3.907 3 H 0.110 0.890 4 C -0.560 4.560 5 H 0.064 0.936 6 C -0.161 4.161 7 N -0.572 5.572 8 Si 0.710 3.290 9 H -0.172 1.172 10 H -0.216 1.216 11 H -0.152 1.152 12 N -0.312 5.312 13 C -0.051 4.051 14 C 0.318 3.682 15 O -0.445 6.445 16 C -0.177 4.177 17 C 0.411 3.589 18 F -0.162 7.162 19 F -0.146 7.146 20 F -0.152 7.152 21 C -0.189 4.189 22 C -0.158 4.158 23 C -0.135 4.135 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.093 0.907 35 H 0.145 0.855 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.436 7.833 9.564 12.446 hybrid contribution -0.649 0.412 -0.711 1.048 sum 0.787 8.246 8.853 12.123 Atomic orbital electron populations 1.22216 0.96879 1.01312 1.00219 1.20175 0.92604 0.95744 0.82178 0.88959 1.21253 1.44284 0.96192 0.94295 0.93647 1.25524 0.93804 1.01961 0.94854 1.69996 1.47276 1.38117 1.01858 0.86719 0.81350 0.81930 0.78979 1.17197 1.21551 1.15155 1.48220 1.47690 1.12760 1.22503 1.21581 1.00510 0.81074 1.01909 1.19440 0.78761 0.86735 0.83217 1.90610 1.58342 1.69129 1.26466 1.23592 0.95501 0.92424 1.06185 1.20108 0.82973 0.81940 0.73882 1.93188 1.85198 1.94930 1.42879 1.93162 1.85767 1.39612 1.96068 1.93173 1.66726 1.95121 1.60169 1.23630 0.96326 1.05097 0.93809 1.22764 0.96740 1.02153 0.94121 1.23013 0.87508 1.04034 0.98990 0.93789 0.92595 0.92797 0.92247 0.91889 0.90557 0.91817 0.88922 0.87273 0.86948 0.90652 0.85547 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.82 8.06 71.98 0.58 -5.24 16 2 C 0.19 8.27 0.47 44.25 0.02 8.29 16 3 H 0.09 3.78 0.25 -2.39 0.00 3.78 16 4 C -0.52 -26.43 7.64 25.60 0.20 -26.24 16 5 H 0.05 2.58 6.93 -2.91 -0.02 2.56 16 6 C 0.04 2.01 5.26 84.65 0.45 2.46 16 7 N -0.93 -53.31 13.96 21.45 0.30 -53.01 16 8 Si 0.89 38.27 24.78 68.60 1.70 39.96 16 9 H -0.25 -9.81 7.06 99.48 0.70 -9.11 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.23 -9.13 4.93 99.48 0.49 -8.64 16 12 N -0.58 -23.73 2.75 -826.78 -2.27 -26.01 16 13 C 0.09 3.37 9.34 127.77 1.19 4.56 16 14 C 0.53 20.99 5.95 87.66 0.52 21.51 16 15 O -0.56 -23.90 15.81 -3.06 -0.05 -23.95 16 16 C -0.17 -5.79 0.48 -52.40 -0.03 -5.81 16 17 C 0.47 15.20 2.64 71.98 0.19 15.39 16 18 F -0.18 -6.03 16.91 44.97 0.76 -5.27 16 19 F -0.16 -4.63 15.75 44.97 0.71 -3.92 16 20 F -0.17 -6.10 10.90 44.97 0.49 -5.61 16 21 C -0.15 -5.01 4.91 31.21 0.15 -4.86 16 22 C -0.12 -3.24 7.81 31.21 0.24 -3.00 16 23 C -0.10 -2.58 7.02 31.12 0.22 -2.36 16 24 H 0.04 1.59 7.31 -2.39 -0.02 1.57 16 25 H 0.06 2.21 6.86 -2.39 -0.02 2.19 16 26 H 0.05 2.05 7.70 -2.39 -0.02 2.03 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.89 6.66 -2.39 -0.02 2.88 16 30 H 0.06 2.30 7.65 -2.39 -0.02 2.28 16 31 H 0.09 3.76 4.24 -2.39 -0.01 3.75 16 32 H 0.11 3.24 7.77 -2.39 -0.02 3.22 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.13 2.61 7.17 -2.39 -0.02 2.59 16 36 H 0.09 2.51 7.41 -2.39 -0.02 2.49 16 Total: -1.00 -59.61 282.22 6.27 -53.34 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.90 Total: 19.76 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 3.74 Total: 4.70 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -1.97 Total: -79.01 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 9 Polarization: -16.76 SS G_CDS: 1.96 Total: -14.80 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.70 Total: 39.96 kcal Total: -59.61 6.27 -53.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.851 kcal (2) G-P(sol) polarization free energy of solvation -59.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds