Wall clock time and date at job start Tue Mar 31 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47194 * 2 1 4 4 C 1.50704 * 109.46964 * 120.00208 * 2 1 3 5 5 H 1.07994 * 120.00211 * 119.99780 * 4 2 1 6 6 C 1.37877 * 119.99541 * 299.72304 * 4 2 1 7 7 N 1.31513 * 120.00153 * 0.27310 * 6 4 2 8 8 Si 1.86801 * 119.99697 * 180.27596 * 6 4 2 9 9 H 1.48493 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47036 * 120.00075 * 8 6 4 11 11 H 1.48499 * 109.47277 * 239.99543 * 8 6 4 12 12 N 1.46508 * 109.46994 * 239.99552 * 2 1 3 13 13 C 1.46500 * 120.00050 * 300.00532 * 12 2 1 14 14 C 1.34774 * 119.99755 * 120.00184 * 12 2 1 15 15 O 1.21286 * 119.99837 * 3.86948 * 14 12 2 16 16 C 1.50698 * 120.00313 * 183.86148 * 14 12 2 17 17 C 1.52995 * 112.84722 * 275.85890 * 16 14 12 18 18 F 1.39898 * 109.47612 * 63.97128 * 17 16 14 19 19 F 1.39906 * 109.46881 * 183.96834 * 17 16 14 20 20 F 1.39904 * 109.47171 * 303.96644 * 17 16 14 21 21 C 1.53775 * 113.61546 * 144.65836 * 16 14 12 22 22 C 1.54053 * 86.98665 * 270.84047 * 21 16 14 23 23 C 1.53781 * 87.07705 * 334.57014 * 22 21 16 24 24 H 1.08997 * 109.46754 * 60.00211 * 1 2 3 25 25 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46979 * 300.00532 * 1 2 3 27 27 H 0.97007 * 120.00004 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47214 * 84.04002 * 13 12 2 29 29 H 1.09004 * 109.46710 * 204.03655 * 13 12 2 30 30 H 1.09004 * 109.47096 * 324.03190 * 13 12 2 31 31 H 1.08997 * 113.61710 * 25.43409 * 21 16 14 32 32 H 1.08998 * 113.61323 * 156.34066 * 21 16 14 33 33 H 1.08995 * 113.62318 * 220.02280 * 22 21 16 34 34 H 1.09005 * 113.68717 * 89.12481 * 22 21 16 35 35 H 1.09001 * 113.61516 * 270.88227 * 23 22 21 36 36 H 1.09000 * 113.61585 * 139.97473 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.7039 -0.2361 2.4827 7 7 0.9479 0.8333 2.6033 8 14 2.3329 -1.1122 4.0079 9 1 3.1562 -2.2800 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1813 -1.5770 4.8221 12 7 2.0184 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.1442 1.1029 -1.8573 16 6 3.2237 -0.7184 -3.3561 17 6 4.4691 -1.5877 -3.1720 18 9 4.1807 -2.6352 -2.2907 19 9 4.8582 -2.1129 -4.4090 20 9 5.5074 -0.8100 -2.6482 21 6 3.3062 0.2282 -4.5652 22 6 1.8248 -0.1054 -4.8245 23 6 2.0767 -1.4328 -4.0901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7165 1.1668 3.4844 28 1 0.6861 -2.1470 -1.9057 29 1 2.4105 -2.5541 -2.0753 30 1 1.6332 -2.6224 -0.4755 31 1 3.4798 1.2694 -4.2936 32 1 3.9766 -0.1231 -5.3496 33 1 1.5833 -0.2294 -5.8801 34 1 1.1299 0.5554 -4.3060 35 1 2.4115 -2.2374 -4.7449 36 1 1.2582 -1.7317 -3.4351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339290965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:05 Heat of formation + Delta-G solvation = -152.176250 kcal Electronic energy + Delta-G solvation = -24007.095877 eV Core-core repulsion = 20077.877365 eV Total energy + Delta-G solvation = -3929.218512 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.08834 -47.63074 -47.46333 -40.42091 -37.32047 -35.48295 -32.87588 -29.79536 -28.49009 -26.57945 -25.52705 -25.25454 -23.91311 -21.99563 -20.00020 -18.70054 -18.27748 -18.16192 -17.79004 -16.46284 -15.95052 -15.68254 -14.96495 -14.66768 -14.34505 -14.24015 -14.01316 -13.86988 -13.74166 -13.57792 -13.41268 -12.79704 -12.64869 -12.56239 -12.31629 -12.17013 -11.64165 -11.35600 -11.08951 -10.99839 -10.82921 -10.76955 -10.56599 -10.39864 -10.28763 -10.17454 -9.26485 -9.12305 -8.46590 -7.70001 -6.10468 -4.18150 2.51698 3.20421 3.25394 3.33506 3.36827 3.54308 3.78718 3.96048 4.16607 4.37828 4.50590 4.59033 4.65422 4.83496 5.21116 5.23538 5.45494 5.55376 5.67985 5.83453 5.84595 5.93950 5.99127 6.18450 6.40853 6.68749 6.75635 6.98526 7.29699 7.44219 7.67020 7.95241 8.13112 8.39124 8.71916 8.90358 9.48230 10.95082 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.006471 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.150552 B = 4325.992932 C = 4786.177965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.576 5.576 13 C 0.056 3.944 14 C 0.530 3.470 15 O -0.529 6.529 16 C -0.164 4.164 17 C 0.471 3.529 18 F -0.170 7.170 19 F -0.181 7.181 20 F -0.172 7.172 21 C -0.111 4.111 22 C -0.133 4.133 23 C -0.137 4.137 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.263 0.737 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -6.178 -14.429 15.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.306 5.306 13 C -0.087 4.087 14 C 0.313 3.687 15 O -0.406 6.406 16 C -0.169 4.169 17 C 0.417 3.583 18 F -0.151 7.151 19 F -0.162 7.162 20 F -0.154 7.154 21 C -0.149 4.149 22 C -0.170 4.170 23 C -0.174 4.174 24 H 0.030 0.970 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.534 -5.480 -14.109 15.213 hybrid contribution 0.587 -0.787 1.009 1.407 sum 2.121 -6.266 -13.100 14.676 Atomic orbital electron populations 1.22081 0.97874 0.99566 1.00891 1.19036 0.91008 0.94472 0.79691 0.91808 1.21339 1.31921 1.13025 0.90156 0.92037 1.24884 0.94897 0.94951 0.98994 1.69884 1.36420 1.22545 1.23737 0.86427 0.78643 0.79633 0.82653 1.19742 1.20858 1.20894 1.48182 1.47878 1.11681 1.22903 1.22323 0.99628 0.83393 1.03384 1.19015 0.80296 0.86556 0.82848 1.90683 1.55553 1.18088 1.76262 1.23588 0.94311 0.99691 0.99301 1.20027 0.85520 0.79189 0.73595 1.93072 1.92349 1.60070 1.69629 1.93141 1.92176 1.87579 1.43330 1.93231 1.60983 1.74495 1.86663 1.22950 0.98158 1.00410 0.93375 1.22816 0.96358 0.96658 1.01181 1.23458 0.96923 0.98115 0.98893 0.96987 0.94991 0.88673 0.92689 0.93326 0.90500 0.90068 0.88638 0.88452 0.90145 0.89274 0.88361 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.51 2.63 -69.07 -0.18 6.33 16 3 H 0.06 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -14.23 8.04 -34.44 -0.28 -14.50 16 5 H 0.06 1.66 7.24 -52.49 -0.38 1.28 16 6 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 7 N -0.89 -24.96 11.33 55.43 0.63 -24.33 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.58 -12.20 2.75 -175.25 -0.48 -12.68 16 13 C 0.06 0.95 7.49 59.85 0.45 1.40 16 14 C 0.53 10.90 6.02 -10.99 -0.07 10.83 16 15 O -0.53 -12.92 15.63 5.55 0.09 -12.83 16 16 C -0.16 -2.53 0.43 -154.85 -0.07 -2.60 16 17 C 0.47 7.36 2.59 37.16 0.10 7.46 16 18 F -0.17 -2.74 14.06 2.25 0.03 -2.71 16 19 F -0.18 -2.40 15.71 2.25 0.04 -2.36 16 20 F -0.17 -3.09 17.05 2.25 0.04 -3.05 16 21 C -0.11 -1.43 7.07 -25.78 -0.18 -1.61 16 22 C -0.13 -1.48 7.81 -25.78 -0.20 -1.69 16 23 C -0.14 -1.61 5.89 -25.92 -0.15 -1.76 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.03 0.68 7.67 -51.93 -0.40 0.29 16 26 H 0.09 2.45 6.08 -51.93 -0.32 2.13 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 0.71 6.86 -51.93 -0.36 0.35 16 29 H 0.08 1.16 2.98 -51.93 -0.15 1.00 16 30 H 0.08 1.48 6.96 -51.93 -0.36 1.12 16 31 H 0.10 1.38 7.52 -51.93 -0.39 0.99 16 32 H 0.10 1.04 7.35 -51.93 -0.38 0.66 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.10 0.94 7.63 -51.93 -0.40 0.55 16 36 H 0.10 1.23 4.63 -51.93 -0.24 0.99 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -30.25 294.19 -4.73 -34.99 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -4.14 Total: -0.05 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.34 Total: 2.47 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.15 Total: -37.01 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 0.11 Total: -8.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.25 -4.73 -34.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.191 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds