Wall clock time and date at job start Tue Mar 31 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47194 * 2 1 4 4 C 1.50704 * 109.46964 * 120.00208 * 2 1 3 5 5 H 1.07994 * 120.00211 * 119.99780 * 4 2 1 6 6 C 1.37877 * 119.99541 * 299.72304 * 4 2 1 7 7 N 1.31513 * 120.00153 * 0.27310 * 6 4 2 8 8 Si 1.86801 * 119.99697 * 180.27596 * 6 4 2 9 9 H 1.48493 * 109.47310 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47036 * 120.00075 * 8 6 4 11 11 H 1.48499 * 109.47277 * 239.99543 * 8 6 4 12 12 N 1.46508 * 109.46994 * 239.99552 * 2 1 3 13 13 C 1.46500 * 120.00050 * 300.00532 * 12 2 1 14 14 C 1.34774 * 119.99755 * 120.00184 * 12 2 1 15 15 O 1.21286 * 119.99837 * 3.86948 * 14 12 2 16 16 C 1.50698 * 120.00313 * 183.86148 * 14 12 2 17 17 C 1.52995 * 112.84722 * 275.85890 * 16 14 12 18 18 F 1.39898 * 109.47612 * 63.97128 * 17 16 14 19 19 F 1.39906 * 109.46881 * 183.96834 * 17 16 14 20 20 F 1.39904 * 109.47171 * 303.96644 * 17 16 14 21 21 C 1.53775 * 113.61546 * 144.65836 * 16 14 12 22 22 C 1.54053 * 86.98665 * 270.84047 * 21 16 14 23 23 C 1.53781 * 87.07705 * 334.57014 * 22 21 16 24 24 H 1.08997 * 109.46754 * 60.00211 * 1 2 3 25 25 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46979 * 300.00532 * 1 2 3 27 27 H 0.97007 * 120.00004 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.47214 * 84.04002 * 13 12 2 29 29 H 1.09004 * 109.46710 * 204.03655 * 13 12 2 30 30 H 1.09004 * 109.47096 * 324.03190 * 13 12 2 31 31 H 1.08997 * 113.61710 * 25.43409 * 21 16 14 32 32 H 1.08998 * 113.61323 * 156.34066 * 21 16 14 33 33 H 1.08995 * 113.62318 * 220.02280 * 22 21 16 34 34 H 1.09005 * 113.68717 * 89.12481 * 22 21 16 35 35 H 1.09001 * 113.61516 * 270.88227 * 23 22 21 36 36 H 1.09000 * 113.61585 * 139.97473 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.7039 -0.2361 2.4827 7 7 0.9479 0.8333 2.6033 8 14 2.3329 -1.1122 4.0079 9 1 3.1562 -2.2800 3.6038 10 1 3.1606 -0.1762 4.8105 11 1 1.1813 -1.5770 4.8221 12 7 2.0184 -0.6907 -1.1962 13 6 1.6643 -2.0933 -1.4280 14 6 2.7932 -0.0358 -2.0833 15 8 3.1442 1.1029 -1.8573 16 6 3.2237 -0.7184 -3.3561 17 6 4.4691 -1.5877 -3.1720 18 9 4.1807 -2.6352 -2.2907 19 9 4.8582 -2.1129 -4.4090 20 9 5.5074 -0.8100 -2.6482 21 6 3.3062 0.2282 -4.5652 22 6 1.8248 -0.1054 -4.8245 23 6 2.0767 -1.4328 -4.0901 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7165 1.1668 3.4844 28 1 0.6861 -2.1470 -1.9057 29 1 2.4105 -2.5541 -2.0753 30 1 1.6332 -2.6224 -0.4755 31 1 3.4798 1.2694 -4.2936 32 1 3.9766 -0.1231 -5.3496 33 1 1.5833 -0.2294 -5.8801 34 1 1.1299 0.5554 -4.3060 35 1 2.4115 -2.2374 -4.7449 36 1 1.2582 -1.7317 -3.4351 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339290965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:30:05 Heat of formation + Delta-G solvation = -170.610491 kcal Electronic energy + Delta-G solvation = -24007.895246 eV Core-core repulsion = 20077.877365 eV Total energy + Delta-G solvation = -3930.017881 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.32909 -48.85242 -48.74015 -41.79912 -38.71031 -37.26764 -34.82800 -31.61359 -29.74901 -27.99867 -27.33956 -26.59756 -25.28431 -23.42818 -21.51244 -20.00661 -19.53355 -19.45588 -19.17201 -18.45388 -17.61009 -16.98439 -16.62581 -16.10506 -15.78147 -15.61606 -15.24568 -15.17698 -15.06239 -14.91944 -14.83771 -14.43349 -14.18120 -13.94322 -13.59109 -13.43061 -13.27780 -13.00295 -12.78429 -12.67951 -12.60472 -12.23055 -12.15432 -11.96295 -11.66377 -11.46672 -11.21963 -10.79284 -10.54508 -9.43802 -8.18416 -6.34383 1.13051 1.38159 1.40509 1.51506 1.82099 2.03725 2.40140 2.62853 2.70858 2.92774 3.10095 3.32770 3.45758 3.55640 3.67229 4.22156 4.37872 4.57386 4.60895 4.68989 4.73730 4.84567 4.89101 4.90500 5.01138 5.01859 5.07137 5.28835 5.44061 5.51073 5.62386 5.97985 6.12253 6.64786 6.71976 7.14446 7.37923 8.86233 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.024129 B = 0.006471 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.150552 B = 4325.992932 C = 4786.177965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.011 0.989 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.583 5.583 13 C 0.053 3.947 14 C 0.522 3.478 15 O -0.581 6.581 16 C -0.173 4.173 17 C 0.473 3.527 18 F -0.174 7.174 19 F -0.160 7.160 20 F -0.192 7.192 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.124 4.124 24 H 0.025 0.975 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -8.435 -16.170 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.312 5.312 13 C -0.088 4.088 14 C 0.308 3.692 15 O -0.462 6.462 16 C -0.177 4.177 17 C 0.418 3.582 18 F -0.155 7.155 19 F -0.142 7.142 20 F -0.173 7.173 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.161 4.161 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.205 -7.776 -15.873 17.717 hybrid contribution 0.722 -0.052 1.520 1.684 sum 1.927 -7.828 -14.354 16.463 Atomic orbital electron populations 1.21849 0.96384 1.00390 1.00262 1.18633 0.92074 0.92115 0.81208 0.97102 1.21573 1.32056 1.13004 0.91250 0.92461 1.25686 0.95047 0.95606 1.01873 1.70012 1.37207 1.23654 1.24463 0.85445 0.78334 0.78467 0.79023 1.19246 1.21101 1.19602 1.48157 1.47975 1.13213 1.21897 1.22568 1.02066 0.80734 1.03433 1.19819 0.79145 0.86140 0.84137 1.90649 1.57194 1.20603 1.77726 1.23608 0.95762 1.01162 0.97217 1.20051 0.85100 0.78999 0.74033 1.93055 1.92297 1.60183 1.69986 1.93177 1.91964 1.87206 1.41819 1.93198 1.61911 1.75113 1.87089 1.23088 1.00353 0.98598 0.92702 1.22783 0.94430 0.95626 1.03205 1.23585 0.94906 0.99074 0.98525 0.95577 0.93231 0.91289 0.92523 0.90198 0.88259 0.91493 0.91079 0.85486 0.86324 0.91297 0.84869 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.97 71.98 0.65 -5.50 16 2 C 0.26 13.62 2.63 44.25 0.12 13.73 16 3 H 0.01 0.68 6.91 -2.39 -0.02 0.67 16 4 C -0.54 -29.82 8.04 25.60 0.21 -29.62 16 5 H 0.06 3.13 7.24 -2.91 -0.02 3.11 16 6 C 0.02 0.98 5.31 84.65 0.45 1.43 16 7 N -0.91 -52.68 11.33 21.45 0.24 -52.44 16 8 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 N -0.58 -24.81 2.75 -826.76 -2.28 -27.08 16 13 C 0.05 1.72 7.49 127.77 0.96 2.68 16 14 C 0.52 21.76 6.02 87.66 0.53 22.29 16 15 O -0.58 -29.87 15.63 -3.05 -0.05 -29.91 16 16 C -0.17 -5.04 0.43 -52.40 -0.02 -5.07 16 17 C 0.47 13.88 2.59 71.98 0.19 14.06 16 18 F -0.17 -5.27 14.06 44.97 0.63 -4.64 16 19 F -0.16 -3.70 15.71 44.97 0.71 -2.99 16 20 F -0.19 -6.82 17.05 44.97 0.77 -6.06 16 21 C -0.11 -2.61 7.07 31.21 0.22 -2.38 16 22 C -0.12 -2.36 7.81 31.21 0.24 -2.12 16 23 C -0.12 -2.44 5.89 31.12 0.18 -2.26 16 24 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 2.10 7.67 -2.39 -0.02 2.09 16 26 H 0.07 3.63 6.08 -2.39 -0.01 3.62 16 27 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.08 2.08 6.86 -2.39 -0.02 2.07 16 29 H 0.10 2.74 2.98 -2.39 -0.01 2.73 16 30 H 0.07 2.37 6.96 -2.38 -0.02 2.35 16 31 H 0.07 2.05 7.52 -2.39 -0.02 2.04 16 32 H 0.13 2.25 7.35 -2.39 -0.02 2.23 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.13 1.77 7.63 -2.39 -0.02 1.76 16 36 H 0.10 2.06 4.63 -2.39 -0.01 2.05 16 Total: -1.00 -69.03 294.19 6.88 -62.15 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.12 Total: 8.04 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 3.71 Total: 7.26 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.03 Total: -79.52 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 9 Polarization: -15.79 SS G_CDS: 2.11 Total: -13.68 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -69.03 6.88 -62.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339290965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.463 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds