Wall clock time and date at job start Tue Mar 31 2020 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.00248 * 2 1 4 4 C 1.54319 * 109.88103 * 238.90151 * 2 1 3 5 5 H 1.08996 * 110.87347 * 144.34280 * 4 2 1 6 6 C 1.50706 * 110.71852 * 21.13997 * 4 2 1 7 7 C 1.38262 * 119.99182 * 105.19564 * 6 4 2 8 8 C 1.38212 * 120.02773 * 179.97438 * 7 6 4 9 9 C 1.38237 * 120.01556 * 0.02562 * 8 7 6 10 10 C 1.38337 * 119.98262 * 359.97438 * 9 8 7 11 11 Cl 1.73600 * 120.01223 * 180.02562 * 10 9 8 12 12 C 1.38189 * 119.99345 * 284.91071 * 6 4 2 13 13 C 1.55158 * 102.94558 * 262.78073 * 4 2 1 14 14 C 1.54915 * 101.57695 * 324.49686 * 13 4 2 15 15 N 1.47019 * 109.88069 * 121.09594 * 2 1 3 16 16 C 1.36934 * 125.65109 * 300.73693 * 15 2 1 17 17 H 1.08006 * 119.99897 * 359.72093 * 16 15 2 18 18 C 1.38811 * 120.00400 * 179.71609 * 16 15 2 19 19 N 1.31612 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46975 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47246 * 119.99963 * 20 18 16 23 23 H 1.48500 * 109.47216 * 240.00144 * 20 18 16 24 24 H 1.09005 * 109.46502 * 303.54166 * 1 2 3 25 25 H 1.08997 * 109.46818 * 63.53580 * 1 2 3 26 26 H 1.08995 * 109.47528 * 183.53950 * 1 2 3 27 27 H 1.08997 * 109.47483 * 179.64468 * 3 2 1 28 28 H 1.09007 * 109.46863 * 299.64061 * 3 2 1 29 29 H 1.09001 * 109.47308 * 59.63770 * 3 2 1 30 30 H 1.08005 * 119.98628 * 359.97275 * 7 6 4 31 31 H 1.08006 * 119.99751 * 180.02562 * 8 7 6 32 32 H 1.07995 * 120.01323 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.00796 * 0.02911 * 12 6 4 34 34 H 1.08997 * 111.00657 * 206.43029 * 13 4 2 35 35 H 1.09000 * 111.04244 * 82.58314 * 13 4 2 36 36 H 1.09001 * 110.36799 * 278.16911 * 14 13 4 37 37 H 1.09000 * 110.46054 * 155.89674 * 14 13 4 38 38 H 0.97002 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9650 -0.2845 -1.6211 6 6 0.9997 -0.8042 -2.3174 7 6 1.1051 0.0082 -3.4312 8 6 0.1382 -0.0416 -4.4175 9 6 -0.9352 -0.9035 -4.2908 10 6 -1.0411 -1.7166 -3.1766 11 17 -2.3883 -2.7997 -3.0170 12 6 -0.0696 -1.6704 -2.1923 13 6 2.3517 -2.1696 -0.6924 14 6 2.8567 -1.8498 0.7368 15 7 2.0300 -0.7141 1.1839 16 6 1.7666 -0.3826 2.4862 17 1 1.1459 0.4722 2.7109 18 6 2.2972 -1.1453 3.5175 19 7 3.0538 -2.1868 3.2437 20 14 1.9372 -0.6935 5.2940 21 1 1.0676 0.5096 5.3323 22 1 1.2456 -1.8250 5.9621 23 1 3.2118 -0.4063 5.9997 24 1 -0.3632 0.5679 0.8566 25 1 -0.3633 0.4580 -0.9200 26 1 -0.3634 -1.0256 0.0634 27 1 3.1433 1.4277 0.0064 28 1 1.7000 1.9529 -0.8933 29 1 1.6895 1.9568 0.8867 30 1 1.9432 0.6821 -3.5305 31 1 0.2211 0.5929 -5.2876 32 1 -1.6909 -0.9421 -5.0613 33 1 -0.1496 -2.3079 -1.3242 34 1 3.1269 -2.6620 -1.2795 35 1 1.4454 -2.7743 -0.6603 36 1 3.9091 -1.5669 0.7129 37 1 2.7101 -2.7074 1.3935 38 1 3.4249 -2.7195 3.9644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460716982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:07 Heat of formation + Delta-G solvation = 40.670527 kcal Electronic energy + Delta-G solvation = -20224.859339 eV Core-core repulsion = 17286.569196 eV Total energy + Delta-G solvation = -2938.290144 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00605 -37.73970 -36.30221 -33.22327 -31.52827 -30.85816 -30.68606 -28.41225 -26.49733 -25.10195 -23.79024 -22.49725 -21.69663 -20.06182 -18.51656 -16.81724 -16.29578 -15.56949 -15.23219 -14.88193 -14.27061 -13.88094 -13.71627 -13.55997 -13.10343 -12.64247 -12.43833 -12.21890 -11.90608 -11.56560 -11.49260 -11.35996 -11.19108 -11.11019 -10.84077 -10.83442 -10.67016 -10.47881 -10.12071 -10.01741 -9.86851 -9.56348 -9.45927 -8.66676 -8.62564 -8.44289 -6.83291 -5.62338 -3.03512 1.27432 1.39211 2.21660 3.40725 3.46638 3.48682 3.73365 4.49344 4.84117 4.86552 5.14504 5.32541 5.34686 5.41464 5.49253 5.54374 5.68001 5.76189 5.85404 6.03726 6.09895 6.14967 6.29821 6.31834 6.36725 6.41069 6.47374 6.51171 6.63930 6.71921 6.76848 6.83093 6.92661 7.03579 7.20305 7.54068 7.68902 7.88372 8.39288 9.25476 9.86976 10.51485 11.41318 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.005249 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.052503 B = 5332.705535 C = 5764.152282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.191 3.809 3 C -0.147 4.147 4 C -0.059 4.059 5 H 0.082 0.918 6 C -0.034 4.034 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.126 4.126 10 C -0.034 4.034 11 Cl -0.080 7.080 12 C -0.099 4.099 13 C -0.141 4.141 14 C 0.151 3.849 15 N -0.590 5.590 16 C -0.211 4.211 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.910 3.090 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.292 1.292 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.052 0.948 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.108 0.892 38 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 2.280 -14.947 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.102 3.898 3 C -0.207 4.207 4 C -0.078 4.078 5 H 0.100 0.900 6 C -0.035 4.035 7 C -0.137 4.137 8 C -0.128 4.128 9 C -0.145 4.145 10 C -0.061 4.061 11 Cl -0.052 7.052 12 C -0.117 4.117 13 C -0.179 4.179 14 C 0.026 3.974 15 N -0.313 5.313 16 C -0.340 4.340 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.741 3.259 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.030 0.970 37 H 0.126 0.874 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.417 2.108 -14.683 15.792 hybrid contribution -0.284 0.227 0.941 1.009 sum -5.701 2.335 -13.742 15.060 Atomic orbital electron populations 1.22383 0.97506 1.01217 0.99616 1.20192 0.92233 0.90905 0.86443 1.22199 1.00739 0.97760 0.99958 1.21307 0.95282 0.98626 0.92594 0.90012 1.19817 0.95024 0.93870 0.94788 1.21158 0.99451 0.99299 0.93794 1.21003 0.94023 0.98608 0.99183 1.20924 0.99434 0.97027 0.97114 1.20900 0.91372 0.96335 0.97453 1.98356 1.45282 1.63698 1.97828 1.21157 0.92876 0.99582 0.98102 1.23206 1.00711 0.94163 0.99836 1.21958 0.92076 0.93611 0.89754 1.44568 1.56796 1.29975 0.99998 1.19047 1.25009 1.09237 0.80659 0.90568 1.24740 1.00108 0.98076 0.97842 1.69788 1.38141 1.19436 1.29841 0.86057 0.77360 0.77458 0.85011 1.20626 1.21852 1.21878 0.93317 0.94128 0.92746 0.93183 0.94384 0.92876 0.85671 0.85572 0.85592 0.84328 0.92271 0.91783 0.97031 0.87411 0.93888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 7.04 37.16 0.26 -2.53 16 2 C 0.19 3.76 0.91 -130.85 -0.12 3.64 16 3 C -0.15 -2.72 8.46 37.16 0.31 -2.40 16 4 C -0.06 -1.01 2.65 -89.94 -0.24 -1.24 16 5 H 0.08 1.33 7.76 -51.93 -0.40 0.92 16 6 C -0.03 -0.51 3.63 -104.63 -0.38 -0.89 16 7 C -0.12 -1.49 9.68 -39.58 -0.38 -1.88 16 8 C -0.11 -1.22 10.04 -39.59 -0.40 -1.62 16 9 C -0.13 -1.48 9.83 -39.55 -0.39 -1.87 16 10 C -0.03 -0.46 6.32 -39.49 -0.25 -0.71 16 11 Cl -0.08 -1.04 28.96 -51.86 -1.50 -2.54 16 12 C -0.10 -1.48 6.57 -39.55 -0.26 -1.74 16 13 C -0.14 -2.61 6.38 -24.58 -0.16 -2.77 16 14 C 0.15 3.55 5.90 -2.53 -0.01 3.54 16 15 N -0.59 -14.31 2.87 -155.37 -0.45 -14.76 16 16 C -0.21 -5.67 9.46 -15.06 -0.14 -5.82 16 17 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -26.50 10.08 55.49 0.56 -25.94 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H 0.05 0.96 8.04 -51.93 -0.42 0.55 16 25 H 0.04 0.69 6.60 -51.93 -0.34 0.34 16 26 H 0.05 1.06 6.23 -51.93 -0.32 0.73 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.03 8.03 -51.93 -0.42 0.62 16 30 H 0.13 1.37 8.05 -52.48 -0.42 0.95 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 2.25 5.30 -52.49 -0.28 1.97 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.18 5.93 -51.93 -0.31 0.87 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.11 2.88 5.85 -51.93 -0.30 2.58 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 311.74 15.07 4.70 4.70 Total: -1.00 -28.33 311.74 -9.26 -37.60 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.30 Total: 0.70 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.25 Total: -16.73 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.11 Total: -40.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.33 -9.26 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460716982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.266 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds