Wall clock time and date at job start Tue Mar 31 2020 00:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.00248 * 2 1 4 4 C 1.54319 * 109.88103 * 238.90151 * 2 1 3 5 5 H 1.08996 * 110.87347 * 144.34280 * 4 2 1 6 6 C 1.50706 * 110.71852 * 21.13997 * 4 2 1 7 7 C 1.38262 * 119.99182 * 105.19564 * 6 4 2 8 8 C 1.38212 * 120.02773 * 179.97438 * 7 6 4 9 9 C 1.38237 * 120.01556 * 0.02562 * 8 7 6 10 10 C 1.38337 * 119.98262 * 359.97438 * 9 8 7 11 11 Cl 1.73600 * 120.01223 * 180.02562 * 10 9 8 12 12 C 1.38189 * 119.99345 * 284.91071 * 6 4 2 13 13 C 1.55158 * 102.94558 * 262.78073 * 4 2 1 14 14 C 1.54915 * 101.57695 * 324.49686 * 13 4 2 15 15 N 1.47019 * 109.88069 * 121.09594 * 2 1 3 16 16 C 1.36934 * 125.65109 * 300.73693 * 15 2 1 17 17 H 1.08006 * 119.99897 * 359.72093 * 16 15 2 18 18 C 1.38811 * 120.00400 * 179.71609 * 16 15 2 19 19 N 1.31612 * 119.99809 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00194 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46975 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47246 * 119.99963 * 20 18 16 23 23 H 1.48500 * 109.47216 * 240.00144 * 20 18 16 24 24 H 1.09005 * 109.46502 * 303.54166 * 1 2 3 25 25 H 1.08997 * 109.46818 * 63.53580 * 1 2 3 26 26 H 1.08995 * 109.47528 * 183.53950 * 1 2 3 27 27 H 1.08997 * 109.47483 * 179.64468 * 3 2 1 28 28 H 1.09007 * 109.46863 * 299.64061 * 3 2 1 29 29 H 1.09001 * 109.47308 * 59.63770 * 3 2 1 30 30 H 1.08005 * 119.98628 * 359.97275 * 7 6 4 31 31 H 1.08006 * 119.99751 * 180.02562 * 8 7 6 32 32 H 1.07995 * 120.01323 * 179.97438 * 9 8 7 33 33 H 1.07994 * 120.00796 * 0.02911 * 12 6 4 34 34 H 1.08997 * 111.00657 * 206.43029 * 13 4 2 35 35 H 1.09000 * 111.04244 * 82.58314 * 13 4 2 36 36 H 1.09001 * 110.36799 * 278.16911 * 14 13 4 37 37 H 1.09000 * 110.46054 * 155.89674 * 14 13 4 38 38 H 0.97002 * 119.99967 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4377 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 2.9650 -0.2845 -1.6211 6 6 0.9997 -0.8042 -2.3174 7 6 1.1051 0.0082 -3.4312 8 6 0.1382 -0.0416 -4.4175 9 6 -0.9352 -0.9035 -4.2908 10 6 -1.0411 -1.7166 -3.1766 11 17 -2.3883 -2.7997 -3.0170 12 6 -0.0696 -1.6704 -2.1923 13 6 2.3517 -2.1696 -0.6924 14 6 2.8567 -1.8498 0.7368 15 7 2.0300 -0.7141 1.1839 16 6 1.7666 -0.3826 2.4862 17 1 1.1459 0.4722 2.7109 18 6 2.2972 -1.1453 3.5175 19 7 3.0538 -2.1868 3.2437 20 14 1.9372 -0.6935 5.2940 21 1 1.0676 0.5096 5.3323 22 1 1.2456 -1.8250 5.9621 23 1 3.2118 -0.4063 5.9997 24 1 -0.3632 0.5679 0.8566 25 1 -0.3633 0.4580 -0.9200 26 1 -0.3634 -1.0256 0.0634 27 1 3.1433 1.4277 0.0064 28 1 1.7000 1.9529 -0.8933 29 1 1.6895 1.9568 0.8867 30 1 1.9432 0.6821 -3.5305 31 1 0.2211 0.5929 -5.2876 32 1 -1.6909 -0.9421 -5.0613 33 1 -0.1496 -2.3079 -1.3242 34 1 3.1269 -2.6620 -1.2795 35 1 1.4454 -2.7743 -0.6603 36 1 3.9091 -1.5669 0.7129 37 1 2.7101 -2.7074 1.3935 38 1 3.4249 -2.7195 3.9644 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460716982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:07 Heat of formation + Delta-G solvation = 27.311240 kcal Electronic energy + Delta-G solvation = -20225.438641 eV Core-core repulsion = 17286.569196 eV Total energy + Delta-G solvation = -2938.869446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.25193 -39.08415 -37.33078 -35.00535 -33.04083 -32.47852 -31.67753 -30.04512 -27.99008 -26.69935 -25.54365 -23.62549 -22.87603 -21.71453 -20.03645 -18.30576 -17.80654 -16.91501 -16.47744 -16.35079 -15.77431 -15.54682 -15.05058 -14.66070 -14.40439 -14.09449 -13.96252 -13.72165 -13.47035 -13.16193 -12.86139 -12.79119 -12.72305 -12.49139 -12.39480 -12.26373 -12.03530 -11.94558 -11.86307 -11.56885 -11.43034 -11.29930 -11.14667 -10.68253 -9.67498 -9.49557 -8.82170 -7.71057 -5.13101 0.28991 0.40199 1.22651 1.46048 1.46624 1.56062 2.51367 2.74370 3.37790 3.56640 3.82330 3.86065 4.06033 4.11628 4.21902 4.38291 4.42297 4.52570 4.53367 4.59339 4.79864 4.84341 4.87098 4.88576 5.00250 5.07618 5.13348 5.20912 5.22976 5.36662 5.46621 5.47884 5.55554 5.62051 5.73690 5.74801 5.90327 5.96607 6.38306 7.18276 7.87968 8.51403 9.30755 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.005249 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.052503 B = 5332.705535 C = 5764.152282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.179 3.821 3 C -0.140 4.140 4 C -0.045 4.045 5 H 0.094 0.906 6 C -0.050 4.050 7 C -0.114 4.114 8 C -0.099 4.099 9 C -0.120 4.120 10 C -0.045 4.045 11 Cl -0.083 7.083 12 C -0.113 4.113 13 C -0.128 4.128 14 C 0.153 3.847 15 N -0.608 5.608 16 C -0.212 4.212 17 H 0.076 0.924 18 C -0.071 4.071 19 N -0.951 5.951 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.295 1.295 23 H -0.295 1.295 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.061 0.939 36 H -0.013 1.013 37 H 0.071 0.929 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 3.984 -17.759 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.091 3.909 3 C -0.199 4.199 4 C -0.064 4.064 5 H 0.112 0.888 6 C -0.051 4.051 7 C -0.132 4.132 8 C -0.117 4.117 9 C -0.138 4.138 10 C -0.072 4.072 11 Cl -0.054 7.054 12 C -0.131 4.131 13 C -0.167 4.167 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.341 4.341 17 H 0.094 0.906 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.799 3.201 21 H -0.194 1.194 22 H -0.223 1.223 23 H -0.222 1.222 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.054 0.946 30 H 0.165 0.835 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.005 0.995 37 H 0.089 0.911 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.304 3.837 -17.525 19.015 hybrid contribution -0.060 -0.289 1.717 1.742 sum -6.364 3.548 -15.808 17.406 Atomic orbital electron populations 1.22224 0.96796 1.00296 0.99940 1.20512 0.92671 0.91677 0.86029 1.22100 1.00153 0.96805 1.00851 1.21145 0.96584 0.96469 0.92161 0.88760 1.19582 0.94587 0.95602 0.95306 1.21414 1.00356 0.98590 0.92855 1.21410 0.92615 0.98015 0.99628 1.21290 1.00072 0.95892 0.96582 1.21017 0.91194 0.97022 0.97958 1.98355 1.45239 1.63911 1.97891 1.20992 0.93985 1.00057 0.98107 1.23027 1.00948 0.95864 0.96828 1.21699 0.91028 0.92244 0.92220 1.44813 1.56855 1.30835 1.00616 1.19308 1.23938 1.08637 0.82236 0.90613 1.25478 1.00877 0.98542 1.01351 1.70042 1.39472 1.20473 1.30198 0.85129 0.76938 0.77274 0.80799 1.19381 1.22267 1.22219 0.95054 0.91748 0.94098 0.93949 0.90839 0.94597 0.83517 0.81851 0.83247 0.86684 0.90231 0.92036 0.99494 0.91122 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 7.04 71.98 0.51 -4.44 16 2 C 0.18 6.91 0.91 3.95 0.00 6.92 16 3 C -0.14 -4.95 8.46 71.98 0.61 -4.34 16 4 C -0.04 -1.45 2.65 -10.35 -0.03 -1.48 16 5 H 0.09 2.82 7.76 -2.39 -0.02 2.80 16 6 C -0.05 -1.35 3.63 -19.87 -0.07 -1.42 16 7 C -0.11 -2.35 9.68 22.27 0.22 -2.13 16 8 C -0.10 -1.66 10.04 22.26 0.22 -1.44 16 9 C -0.12 -2.31 9.83 22.29 0.22 -2.10 16 10 C -0.05 -1.13 6.32 22.33 0.14 -0.99 16 11 Cl -0.08 -2.03 28.96 -2.72 -0.08 -2.11 16 12 C -0.11 -3.22 6.57 22.29 0.15 -3.07 16 13 C -0.13 -4.78 6.38 31.99 0.20 -4.58 16 14 C 0.15 7.51 5.90 86.86 0.51 8.03 16 15 N -0.61 -30.20 2.87 -645.48 -1.86 -32.05 16 16 C -0.21 -11.67 9.46 84.03 0.80 -10.88 16 17 H 0.08 4.08 7.80 -2.91 -0.02 4.06 16 18 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 19 N -0.95 -57.03 10.08 21.65 0.22 -56.81 16 20 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 H 0.03 1.22 8.04 -2.38 -0.02 1.20 16 25 H 0.06 2.05 6.60 -2.39 -0.02 2.03 16 26 H 0.04 1.60 6.23 -2.39 -0.01 1.59 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 30 H 0.15 2.39 8.05 -2.91 -0.02 2.37 16 31 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.12 3.79 5.30 -2.91 -0.02 3.77 16 34 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.32 5.93 -2.39 -0.01 2.31 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.07 4.00 5.85 -2.39 -0.01 3.99 16 38 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -63.65 311.74 5.30 -58.35 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.05 Total: 9.66 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.94 Total: -25.47 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -1.64 Total: -88.86 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.08 Total: -2.11 kcal Total: -63.65 5.30 -58.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460716982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.662 kcal (2) G-P(sol) polarization free energy of solvation -63.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds