Wall clock time and date at job start Tue Mar 31 2020 01:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47475 * 2 1 4 4 C 1.36940 * 120.00006 * 264.20257 * 3 2 1 5 5 H 1.08000 * 120.00193 * 145.47078 * 4 3 2 6 6 C 1.38815 * 119.99511 * 325.46882 * 4 3 2 7 7 N 1.31619 * 119.99537 * 158.50303 * 6 4 3 8 8 Si 1.86797 * 120.00260 * 338.50077 * 6 4 3 9 9 H 1.48503 * 109.47196 * 95.32547 * 8 6 4 10 10 H 1.48505 * 109.47219 * 215.32402 * 8 6 4 11 11 H 1.48500 * 109.47066 * 335.32462 * 8 6 4 12 12 C 1.46497 * 120.00112 * 84.19655 * 3 2 1 13 13 C 1.50697 * 109.46880 * 92.12166 * 12 3 2 14 14 C 1.34337 * 126.43986 * 264.64060 * 13 12 3 15 15 C 1.50697 * 125.80421 * 359.97114 * 14 13 12 16 16 N 1.33879 * 108.38709 * 180.02562 * 14 13 12 17 17 C 1.32361 * 109.13630 * 0.02562 * 16 14 13 18 18 S 1.76245 * 141.94881 * 180.02562 * 17 16 14 19 19 C 1.75786 * 90.69793 * 180.02562 * 18 17 16 20 20 C 1.30917 * 109.82059 * 359.97438 * 19 18 17 21 21 C 1.50696 * 121.83931 * 180.02562 * 20 19 18 22 22 N 1.35149 * 108.82359 * 0.26560 * 17 16 14 23 23 H 1.09004 * 109.47319 * 300.00296 * 1 2 3 24 24 H 1.09004 * 109.47447 * 60.00009 * 1 2 3 25 25 H 1.09001 * 109.47783 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46909 * 239.99690 * 2 1 3 27 27 H 1.08997 * 109.46868 * 120.00290 * 2 1 3 28 28 H 0.96999 * 119.99734 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.47094 * 332.12408 * 12 3 2 30 30 H 1.09002 * 109.47331 * 212.12792 * 12 3 2 31 31 H 1.08999 * 109.46820 * 264.53598 * 15 14 13 32 32 H 1.08998 * 109.47409 * 24.54322 * 15 14 13 33 33 H 1.09006 * 109.46740 * 144.54264 * 15 14 13 34 34 H 1.07994 * 125.09023 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46639 * 90.03016 * 21 20 19 36 36 H 1.08998 * 109.47450 * 330.02752 * 21 20 19 37 37 H 1.09001 * 109.46812 * 210.02092 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3596 1.9867 -1.1799 5 1 2.1827 3.0435 -1.3154 6 6 2.9329 1.2423 -2.2016 7 7 2.8771 1.6761 -3.4430 8 14 3.7837 -0.3751 -1.8148 9 1 2.8322 -1.4966 -2.0208 10 1 4.9531 -0.5468 -2.7138 11 1 4.2420 -0.3679 -0.4023 12 6 2.1417 2.1145 1.2622 13 6 3.5334 1.9371 1.8123 14 6 3.9220 1.0279 2.7218 15 6 3.0349 -0.0001 3.3753 16 7 5.2311 1.1914 2.9496 17 6 5.6805 2.1873 2.2024 18 16 7.1482 3.0879 1.8271 19 6 6.2640 4.0975 0.6917 20 6 5.0076 3.7312 0.6572 21 6 4.0032 4.4190 -0.2311 22 7 4.6540 2.6879 1.4797 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2781 1.1561 -4.1570 29 1 1.4159 1.7294 1.9786 30 1 1.9524 3.1736 1.0871 31 1 2.6852 0.3794 4.3354 32 1 2.1793 -0.2038 2.7315 33 1 3.5989 -0.9198 3.5318 34 1 6.6932 4.8992 0.1092 35 1 3.9747 3.9214 -1.2005 36 1 4.2912 5.4615 -0.3660 37 1 3.0170 4.3713 0.2308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001461936693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:52 Heat of formation + Delta-G solvation = 116.563040 kcal Electronic energy + Delta-G solvation = -20783.312982 eV Core-core repulsion = 17882.650242 eV Total energy + Delta-G solvation = -2900.662740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.17762 -36.85177 -36.40621 -32.12156 -31.57205 -31.13807 -29.47467 -28.25120 -26.90185 -25.08530 -23.35461 -22.52109 -21.00013 -20.03707 -18.63623 -17.61665 -16.72171 -15.90700 -15.50432 -15.03266 -14.38524 -14.16341 -13.88634 -13.39152 -13.28032 -13.07898 -12.66847 -12.58036 -12.35374 -12.19762 -12.04539 -11.86318 -11.77780 -11.38456 -11.13397 -10.84655 -10.64382 -10.55218 -10.40702 -9.89951 -9.76180 -9.64739 -9.50706 -8.68545 -8.14610 -7.18927 -6.98681 -6.13750 -3.53287 1.31534 1.39934 2.02687 2.72170 3.08688 3.22293 3.30190 3.41300 3.51066 4.41293 4.86688 4.93124 5.01224 5.20881 5.37717 5.49263 5.58945 5.62109 5.76243 5.89127 5.93506 5.95079 5.99880 6.14444 6.18501 6.21610 6.25609 6.38139 6.48812 6.64763 6.71385 6.83638 6.98159 7.06826 7.43096 7.87286 8.16838 8.22314 8.78793 9.55262 9.93545 11.00013 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.009137 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.735726 B = 3063.667511 C = 3750.540042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 N -0.593 5.593 4 C -0.269 4.269 5 H 0.088 0.912 6 C 0.040 3.960 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.285 1.285 10 H -0.303 1.303 11 H -0.268 1.268 12 C 0.211 3.789 13 C 0.005 3.995 14 C 0.016 3.984 15 C -0.063 4.063 16 N -0.459 5.459 17 C 0.125 3.875 18 S 0.139 5.861 19 C -0.256 4.256 20 C 0.125 3.875 21 C -0.102 4.102 22 N -0.389 5.389 23 H 0.045 0.955 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.188 0.812 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 3.585 9.206 9.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.002 3.998 3 N -0.314 5.314 4 C -0.397 4.397 5 H 0.106 0.894 6 C -0.161 4.161 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.192 1.192 12 C 0.083 3.917 13 C -0.112 4.112 14 C -0.114 4.114 15 C -0.121 4.121 16 N -0.183 5.183 17 C -0.241 4.241 18 S 0.387 5.613 19 C -0.393 4.393 20 C 0.015 3.985 21 C -0.161 4.161 22 N -0.069 5.069 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.205 0.795 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.251 3.078 9.935 10.897 hybrid contribution -0.934 -0.601 -1.072 1.544 sum 2.317 2.477 8.862 9.489 Atomic orbital electron populations 1.22221 0.98467 0.99662 1.01771 1.21216 0.92810 0.86297 0.99458 1.44359 1.73533 1.11565 1.01935 1.18881 1.35837 0.96255 0.88760 0.89432 1.25357 0.97566 0.97851 0.95372 1.69827 1.45207 1.39809 0.98781 0.87036 0.79279 0.84690 0.78697 1.21322 1.23163 1.19244 1.19634 0.86319 0.97559 0.88172 1.22931 0.91368 0.96049 1.00893 1.20385 0.90821 0.99866 1.00325 1.20077 0.96986 0.95647 0.99386 1.70319 1.10194 1.14345 1.23479 1.25857 0.94507 1.02128 1.01571 1.84191 1.03444 1.29653 1.43997 1.24521 0.95288 1.09631 1.09813 1.19196 0.96099 0.89365 0.93842 1.21034 0.96218 0.98807 1.00022 1.43605 1.09545 1.23996 1.29718 0.93624 0.92142 0.94076 0.92653 0.94220 0.92589 0.90906 0.92029 0.91509 0.90811 0.91418 0.79462 0.86913 0.90798 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.23 37.16 0.38 -2.45 16 2 C 0.13 2.63 5.00 -4.04 -0.02 2.61 16 3 N -0.59 -12.95 2.13 -174.61 -0.37 -13.32 16 4 C -0.27 -6.72 8.28 -15.06 -0.12 -6.84 16 5 H 0.09 2.26 6.26 -52.49 -0.33 1.93 16 6 C 0.04 1.08 5.31 -17.43 -0.09 0.99 16 7 N -0.90 -25.67 13.97 55.49 0.78 -24.90 16 8 Si 0.87 22.53 24.84 -169.99 -4.22 18.30 16 9 H -0.29 -7.14 6.67 56.52 0.38 -6.77 16 10 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 11 H -0.27 -7.24 7.11 56.52 0.40 -6.84 16 12 C 0.21 3.96 5.53 -5.20 -0.03 3.93 16 13 C 0.00 0.10 6.77 -80.75 -0.55 -0.45 16 14 C 0.02 0.33 7.06 -83.08 -0.59 -0.26 16 15 C -0.06 -0.98 10.09 36.00 0.36 -0.62 16 16 N -0.46 -9.84 11.33 -9.77 -0.11 -9.95 16 17 C 0.13 2.56 8.92 -88.70 -0.79 1.77 16 18 S 0.14 2.23 23.37 -107.50 -2.51 -0.28 16 19 C -0.26 -3.89 10.80 29.04 0.31 -3.57 16 20 C 0.13 2.23 6.75 -81.75 -0.55 1.68 16 21 C -0.10 -1.68 8.57 36.00 0.31 -1.37 16 22 N -0.39 -7.88 3.19 -55.40 -0.18 -8.06 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.30 3.09 -51.93 -0.16 1.14 16 27 H 0.04 0.76 6.19 -51.93 -0.32 0.44 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 29 H 0.07 1.18 7.30 -51.92 -0.38 0.80 16 30 H 0.06 1.12 6.00 -51.93 -0.31 0.81 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.09 5.44 -51.93 -0.28 0.80 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 35 H 0.11 2.24 6.53 -51.93 -0.34 1.90 16 36 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 37 H 0.08 1.31 5.49 -51.93 -0.29 1.02 16 LS Contribution 304.48 15.07 4.59 4.59 Total: -1.00 -31.21 304.48 -7.93 -39.14 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.52 Total: -0.94 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.38 Total: -4.59 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.12 Total: -56.23 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.22 Total: 18.30 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.21 -7.93 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461936693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.708 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds