Wall clock time and date at job start Tue Mar 31 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47475 * 2 1 4 4 C 1.36940 * 120.00006 * 264.20257 * 3 2 1 5 5 H 1.08000 * 120.00193 * 145.47078 * 4 3 2 6 6 C 1.38815 * 119.99511 * 325.46882 * 4 3 2 7 7 N 1.31619 * 119.99537 * 158.50303 * 6 4 3 8 8 Si 1.86797 * 120.00260 * 338.50077 * 6 4 3 9 9 H 1.48503 * 109.47196 * 95.32547 * 8 6 4 10 10 H 1.48505 * 109.47219 * 215.32402 * 8 6 4 11 11 H 1.48500 * 109.47066 * 335.32462 * 8 6 4 12 12 C 1.46497 * 120.00112 * 84.19655 * 3 2 1 13 13 C 1.50697 * 109.46880 * 92.12166 * 12 3 2 14 14 C 1.34337 * 126.43986 * 264.64060 * 13 12 3 15 15 C 1.50697 * 125.80421 * 359.97114 * 14 13 12 16 16 N 1.33879 * 108.38709 * 180.02562 * 14 13 12 17 17 C 1.32361 * 109.13630 * 0.02562 * 16 14 13 18 18 S 1.76245 * 141.94881 * 180.02562 * 17 16 14 19 19 C 1.75786 * 90.69793 * 180.02562 * 18 17 16 20 20 C 1.30917 * 109.82059 * 359.97438 * 19 18 17 21 21 C 1.50696 * 121.83931 * 180.02562 * 20 19 18 22 22 N 1.35149 * 108.82359 * 0.26560 * 17 16 14 23 23 H 1.09004 * 109.47319 * 300.00296 * 1 2 3 24 24 H 1.09004 * 109.47447 * 60.00009 * 1 2 3 25 25 H 1.09001 * 109.47783 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46909 * 239.99690 * 2 1 3 27 27 H 1.08997 * 109.46868 * 120.00290 * 2 1 3 28 28 H 0.96999 * 119.99734 * 179.97438 * 7 6 4 29 29 H 1.09009 * 109.47094 * 332.12408 * 12 3 2 30 30 H 1.09002 * 109.47331 * 212.12792 * 12 3 2 31 31 H 1.08999 * 109.46820 * 264.53598 * 15 14 13 32 32 H 1.08998 * 109.47409 * 24.54322 * 15 14 13 33 33 H 1.09006 * 109.46740 * 144.54264 * 15 14 13 34 34 H 1.07994 * 125.09023 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46639 * 90.03016 * 21 20 19 36 36 H 1.08998 * 109.47450 * 330.02752 * 21 20 19 37 37 H 1.09001 * 109.46812 * 210.02092 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3596 1.9867 -1.1799 5 1 2.1827 3.0435 -1.3154 6 6 2.9329 1.2423 -2.2016 7 7 2.8771 1.6761 -3.4430 8 14 3.7837 -0.3751 -1.8148 9 1 2.8322 -1.4966 -2.0208 10 1 4.9531 -0.5468 -2.7138 11 1 4.2420 -0.3679 -0.4023 12 6 2.1417 2.1145 1.2622 13 6 3.5334 1.9371 1.8123 14 6 3.9220 1.0279 2.7218 15 6 3.0349 -0.0001 3.3753 16 7 5.2311 1.1914 2.9496 17 6 5.6805 2.1873 2.2024 18 16 7.1482 3.0879 1.8271 19 6 6.2640 4.0975 0.6917 20 6 5.0076 3.7312 0.6572 21 6 4.0032 4.4190 -0.2311 22 7 4.6540 2.6879 1.4797 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.2781 1.1561 -4.1570 29 1 1.4159 1.7294 1.9786 30 1 1.9524 3.1736 1.0871 31 1 2.6852 0.3794 4.3354 32 1 2.1793 -0.2038 2.7315 33 1 3.5989 -0.9198 3.5318 34 1 6.6932 4.8992 0.1092 35 1 3.9747 3.9214 -1.2005 36 1 4.2912 5.4615 -0.3660 37 1 3.0170 4.3713 0.2308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001461936693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:51 Heat of formation + Delta-G solvation = 98.196033 kcal Electronic energy + Delta-G solvation = -20784.109435 eV Core-core repulsion = 17882.650242 eV Total energy + Delta-G solvation = -2901.459193 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.61081 -38.32390 -38.00811 -34.01882 -33.04306 -32.56916 -31.01790 -29.60547 -28.42125 -26.59866 -25.01740 -23.97939 -22.68847 -21.41863 -20.09495 -19.11660 -18.49703 -17.50138 -17.26424 -16.47211 -16.01070 -15.48884 -15.36593 -15.12130 -14.79188 -14.52518 -14.31033 -13.94208 -13.68484 -13.66821 -13.57333 -13.47165 -13.11541 -12.98386 -12.76843 -12.35972 -12.20925 -12.11904 -11.99176 -11.62786 -11.38329 -11.27448 -11.12328 -10.68478 -9.55188 -8.92827 -8.45258 -8.21796 -5.53604 -0.05355 0.03210 0.72218 1.15234 1.29131 1.30941 1.39776 1.71860 1.83754 2.34211 3.06249 3.39750 3.49774 3.68584 4.04919 4.14723 4.22119 4.25405 4.41216 4.51182 4.59819 4.68347 4.71325 4.78014 4.81268 4.87813 4.94382 4.96638 5.09563 5.18672 5.25168 5.43411 5.52899 5.68548 5.92520 6.03112 6.16025 6.75423 6.92367 7.59928 8.01367 8.96255 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.009137 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.735726 B = 3063.667511 C = 3750.540042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.119 3.881 3 N -0.604 5.604 4 C -0.228 4.228 5 H 0.078 0.922 6 C -0.005 4.005 7 N -0.937 5.937 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.323 1.323 11 H -0.286 1.286 12 C 0.216 3.784 13 C -0.022 4.022 14 C 0.008 3.992 15 C -0.062 4.062 16 N -0.492 5.492 17 C 0.094 3.906 18 S 0.182 5.818 19 C -0.230 4.230 20 C 0.081 3.919 21 C -0.088 4.088 22 N -0.397 5.397 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.026 0.974 27 H 0.056 0.944 28 H 0.259 0.741 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.230 0.770 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 4.228 10.881 11.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.005 4.005 3 N -0.326 5.326 4 C -0.358 4.358 5 H 0.095 0.905 6 C -0.201 4.201 7 N -0.582 5.582 8 Si 0.750 3.250 9 H -0.206 1.206 10 H -0.253 1.253 11 H -0.212 1.212 12 C 0.089 3.911 13 C -0.139 4.139 14 C -0.122 4.122 15 C -0.119 4.119 16 N -0.218 5.218 17 C -0.271 4.271 18 S 0.430 5.570 19 C -0.366 4.366 20 C -0.028 4.028 21 C -0.147 4.147 22 N -0.076 5.076 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.053 3.713 11.646 12.599 hybrid contribution -0.780 -0.700 -1.430 1.773 sum 2.273 3.013 10.216 10.891 Atomic orbital electron populations 1.22083 0.95689 1.01308 1.01859 1.21312 0.95016 0.85394 0.98768 1.44507 1.73807 1.12076 1.02207 1.18902 1.31986 0.95571 0.89327 0.90482 1.25662 0.99548 0.99264 0.95642 1.69894 1.48069 1.40908 0.99348 0.86346 0.78135 0.84064 0.76494 1.20559 1.25316 1.21219 1.19723 0.86607 0.97525 0.87243 1.23048 0.91868 0.96915 1.02056 1.21101 0.90866 1.00153 1.00110 1.20206 0.96502 0.94682 1.00518 1.70313 1.11167 1.15480 1.24812 1.26651 0.96316 1.02407 1.01715 1.84050 1.01441 1.28312 1.43225 1.25152 0.94245 1.09075 1.08111 1.19572 0.97524 0.90296 0.95438 1.20868 0.95870 1.00484 0.97505 1.43845 1.09585 1.24348 1.29817 0.91147 0.94347 0.91714 0.95636 0.92546 0.93206 0.87776 0.91631 0.88927 0.89875 0.91375 0.75378 0.90733 0.86951 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.23 71.98 0.74 -4.12 16 2 C 0.12 4.74 5.00 86.38 0.43 5.17 16 3 N -0.60 -25.71 2.13 -706.35 -1.50 -27.21 16 4 C -0.23 -11.41 8.28 84.03 0.70 -10.71 16 5 H 0.08 4.02 6.26 -2.91 -0.02 4.00 16 6 C 0.00 -0.25 5.31 84.86 0.45 0.20 16 7 N -0.94 -55.14 13.97 21.65 0.30 -54.84 16 8 Si 0.92 47.74 24.84 68.60 1.70 49.45 16 9 H -0.28 -13.86 6.67 99.48 0.66 -13.20 16 10 H -0.32 -17.62 7.11 99.48 0.71 -16.91 16 11 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 12 C 0.22 7.71 5.53 85.63 0.47 8.18 16 13 C -0.02 -0.85 6.77 40.54 0.27 -0.57 16 14 C 0.01 0.32 7.06 41.35 0.29 0.61 16 15 C -0.06 -1.77 10.09 71.24 0.72 -1.05 16 16 N -0.49 -20.76 11.33 -184.82 -2.09 -22.86 16 17 C 0.09 3.76 8.92 179.68 1.60 5.36 16 18 S 0.18 5.43 23.37 -56.49 -1.32 4.11 16 19 C -0.23 -6.33 10.80 67.87 0.73 -5.60 16 20 C 0.08 2.76 6.75 41.72 0.28 3.04 16 21 C -0.09 -2.81 8.57 71.23 0.61 -2.20 16 22 N -0.40 -15.69 3.19 -329.19 -1.05 -16.74 16 23 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.03 1.18 3.09 -2.39 -0.01 1.17 16 27 H 0.06 2.04 6.19 -2.39 -0.01 2.03 16 28 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.10 3.03 7.30 -2.38 -0.02 3.01 16 30 H 0.07 2.28 6.00 -2.39 -0.01 2.27 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.08 2.19 5.44 -2.39 -0.01 2.18 16 33 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.23 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.07 2.97 6.53 -2.39 -0.02 2.96 16 36 H 0.11 2.59 8.10 -2.39 -0.02 2.57 16 37 H 0.07 2.28 5.49 -2.39 -0.01 2.26 16 Total: -1.00 -69.32 304.48 4.39 -64.92 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.05 Total: 4.85 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 7.30 Total: -1.69 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -4.34 Total: -121.65 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.70 Total: 49.45 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.32 Total: 4.11 kcal Total: -69.32 4.39 -64.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001461936693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.120 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds