Wall clock time and date at job start Tue Mar 31 2020 00:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37924 * 119.49902 * 2 1 4 4 C 1.40095 * 119.16300 * 179.72454 * 3 2 1 5 5 C 1.43202 * 120.89391 * 180.25160 * 4 3 2 6 6 N 4.80815 * 135.19555 * 0.27078 * 2 1 3 7 7 C 1.39661 * 118.22024 * 0.49452 * 4 3 2 8 8 C 1.38977 * 118.92200 * 359.50723 * 7 4 3 9 9 N 1.39114 * 119.64042 * 180.27456 * 8 7 4 10 10 C 1.39766 * 120.00254 * 185.75705 * 9 8 7 11 11 C 1.39335 * 119.94910 * 33.35302 * 10 9 8 12 12 C 1.38484 * 120.42113 * 179.72417 * 11 10 9 13 13 C 1.37694 * 120.32463 * 0.54440 * 12 11 10 14 14 C 1.40750 * 119.89124 * 359.73392 * 13 12 11 15 15 C 1.41413 * 120.20437 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99958 * 26.15976 * 15 14 13 17 17 C 1.39926 * 119.99981 * 206.16173 * 15 14 13 18 18 N 1.30831 * 120.00027 * 20.70424 * 17 15 14 19 19 Si 1.86800 * 120.00081 * 200.71204 * 17 15 14 20 20 H 1.48494 * 109.47345 * 89.99824 * 19 17 15 21 21 H 1.48503 * 109.46704 * 209.99883 * 19 17 15 22 22 H 1.48503 * 109.47018 * 329.99423 * 19 17 15 23 23 C 1.38289 * 119.95290 * 213.61925 * 10 9 8 24 24 N 1.31922 * 119.49749 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47057 * 270.02392 * 1 2 3 26 26 H 1.09006 * 109.47311 * 30.01818 * 1 2 3 27 27 H 1.08991 * 109.47423 * 150.02093 * 1 2 3 28 28 H 1.07997 * 120.42114 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.54176 * 179.78707 * 7 4 3 30 30 H 0.97000 * 120.00113 * 5.75527 * 9 8 7 31 31 H 1.07997 * 119.79103 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.83488 * 180.25380 * 12 11 10 33 33 H 1.07999 * 120.05238 * 179.74852 * 13 12 11 34 34 H 0.97005 * 120.00322 * 180.02562 * 18 17 15 35 35 H 1.07995 * 120.16069 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1861 1.2004 0.0000 4 6 3.5870 1.1922 0.0059 5 6 4.3294 2.4167 0.0115 6 7 4.9184 3.3882 0.0160 7 6 4.2402 -0.0422 0.0009 8 6 3.4794 -1.2052 0.0009 9 7 4.1146 -2.4429 0.0018 10 6 3.3624 -3.6146 -0.1197 11 6 2.2025 -3.6197 -0.8919 12 6 1.4529 -4.7766 -1.0235 13 6 1.8400 -5.9325 -0.3831 14 6 3.0061 -5.9409 0.4050 15 6 3.4095 -7.1242 1.0660 16 1 3.1203 -8.0876 0.6731 17 6 4.1832 -7.0466 2.2293 18 7 4.2005 -5.9426 2.9311 19 14 5.1917 -8.5194 2.7802 20 1 6.5449 -8.4478 2.1730 21 1 5.3121 -8.5110 4.2603 22 1 4.5195 -9.7701 2.3454 23 6 3.7673 -4.7656 0.5311 24 7 2.1565 -1.1482 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6448 2.1350 -0.0004 29 1 5.3190 -0.0922 0.0017 30 1 5.0796 -2.4927 0.0866 31 1 1.8884 -2.7167 -1.3942 32 1 0.5577 -4.7710 -1.6278 33 1 1.2498 -6.8312 -0.4856 34 1 4.7372 -5.8887 3.7374 35 1 4.6639 -4.7617 1.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001612391521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:22 Heat of formation + Delta-G solvation = 90.699034 kcal Electronic energy + Delta-G solvation = -19888.706702 eV Core-core repulsion = 16851.478463 eV Total energy + Delta-G solvation = -3037.228239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.44642 -37.93084 -36.79152 -35.33401 -33.50137 -32.91417 -31.26580 -29.58059 -28.50445 -26.84946 -25.28458 -24.26339 -22.56413 -20.98565 -20.49974 -18.42598 -17.39062 -16.70389 -16.14163 -15.86481 -15.30534 -14.92058 -14.55462 -14.48835 -13.69391 -13.62182 -13.33019 -13.16656 -13.04708 -12.79829 -12.56770 -12.34548 -12.19579 -11.81619 -11.74336 -11.35249 -11.11846 -10.73879 -10.51440 -10.33038 -9.90615 -9.71253 -9.47601 -9.16685 -9.04692 -8.23082 -7.38614 -6.83205 -6.62680 -4.36298 0.72139 1.28910 2.44561 2.78036 2.89330 3.06919 3.08283 3.10202 3.23615 3.44681 3.74062 3.93194 4.00046 4.52400 4.63107 4.96823 5.06723 5.15094 5.49572 5.53624 5.66757 5.68430 5.83241 6.02383 6.09119 6.22708 6.49159 6.64615 6.78205 6.98939 7.05424 7.15552 7.21902 7.26085 7.56504 7.73857 7.88814 8.02226 8.05765 8.31790 8.49031 8.64598 8.88701 8.95190 10.18302 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.004223 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.405544 B = 6629.515150 C = 7450.893725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.182 3.818 3 C -0.201 4.201 4 C 0.057 3.943 5 C 0.264 3.736 6 N -0.415 5.415 7 C -0.204 4.204 8 C 0.417 3.583 9 N -0.648 5.648 10 C 0.156 3.844 11 C -0.220 4.220 12 C -0.085 4.085 13 C -0.230 4.230 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.792 5.792 19 Si 0.903 3.097 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.262 1.262 23 C -0.187 4.187 24 N -0.496 5.496 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.411 0.589 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.279 0.721 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 9.117 -3.605 10.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 C -0.227 4.227 4 C 0.046 3.954 5 C -0.052 4.052 6 N -0.090 5.090 7 C -0.233 4.233 8 C 0.181 3.819 9 N -0.270 5.270 10 C 0.063 3.937 11 C -0.242 4.242 12 C -0.104 4.104 13 C -0.250 4.250 14 C 0.122 3.878 15 C -0.499 4.499 16 H 0.097 0.903 17 C -0.138 4.138 18 N -0.418 5.418 19 Si 0.727 3.273 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.186 1.186 23 C -0.209 4.209 24 N -0.213 5.213 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.248 0.752 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.839 9.803 -3.382 10.532 hybrid contribution 1.232 -0.260 0.569 1.382 sum -0.607 9.544 -2.813 9.968 Atomic orbital electron populations 1.20750 0.88428 1.03609 1.03430 1.20973 0.96875 0.86746 0.91261 1.21567 0.91969 0.99819 1.09315 1.15781 0.92004 0.86548 1.01046 1.25579 0.93123 0.92752 0.93744 1.81238 1.08672 1.10910 1.08206 1.21245 1.00806 0.90272 1.10931 1.18147 0.88302 0.85611 0.89840 1.42191 1.08673 1.01640 1.74459 1.17549 0.93865 0.84457 0.97780 1.20251 0.99058 0.97783 1.07070 1.20402 0.97860 0.93183 0.98993 1.21021 0.99261 0.97199 1.07493 1.17305 0.88952 0.92184 0.89365 1.19512 1.28961 0.93883 1.07581 0.90343 1.25855 0.95206 0.97001 0.95723 1.69860 1.31769 1.27750 1.12392 0.86402 0.80674 0.82280 0.77898 1.19356 1.20452 1.18616 1.20897 1.03099 0.92822 1.04114 1.67392 1.07645 1.28765 1.17519 0.90061 0.90703 0.89884 0.84589 0.84418 0.75221 0.87819 0.89189 0.89016 0.91022 0.86820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 36.00 0.37 -0.69 16 2 C 0.18 2.39 6.77 -82.67 -0.56 1.83 16 3 C -0.20 -2.28 9.48 -39.00 -0.37 -2.65 16 4 C 0.06 0.69 5.75 -106.74 -0.61 0.08 16 5 C 0.26 3.28 15.40 -22.47 -0.35 2.94 16 6 N -0.41 -5.83 18.54 41.84 0.78 -5.05 16 7 C -0.20 -2.66 9.69 -38.78 -0.38 -3.03 16 8 C 0.42 6.75 7.20 -154.96 -1.12 5.63 16 9 N -0.65 -11.48 5.47 -10.05 -0.06 -11.53 16 10 C 0.16 3.41 6.28 -83.81 -0.53 2.88 16 11 C -0.22 -4.75 8.58 -39.08 -0.34 -5.08 16 12 C -0.09 -1.86 10.02 -39.69 -0.40 -2.26 16 13 C -0.23 -5.48 9.79 -38.83 -0.38 -5.86 16 14 C 0.12 3.21 5.54 -106.85 -0.59 2.62 16 15 C -0.47 -12.13 9.03 -37.74 -0.34 -12.47 16 16 H 0.08 1.96 7.93 -52.49 -0.42 1.55 16 17 C 0.08 1.96 5.05 -17.35 -0.09 1.87 16 18 N -0.79 -20.06 11.25 55.55 0.63 -19.43 16 19 Si 0.90 18.26 29.61 -169.99 -5.03 13.23 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.19 -4.59 8.60 -38.68 -0.33 -4.92 16 24 N -0.50 -8.29 6.98 -8.71 -0.06 -8.35 16 25 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.41 6.18 8.81 -40.82 -0.36 5.82 16 31 H 0.10 2.11 6.26 -52.49 -0.33 1.78 16 32 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 33 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 35 H 0.11 2.85 6.40 -52.49 -0.34 2.52 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -28.45 314.79 -8.54 -36.99 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.53 Total: 8.52 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -6.01 Total: -19.11 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.28 Total: -44.37 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.45 -8.54 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612391521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.688 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds