Wall clock time and date at job start Tue Mar 31 2020 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37924 * 119.49902 * 2 1 4 4 C 1.40095 * 119.16300 * 179.72454 * 3 2 1 5 5 C 1.43202 * 120.89391 * 180.25160 * 4 3 2 6 6 N 4.80815 * 135.19555 * 0.27078 * 2 1 3 7 7 C 1.39661 * 118.22024 * 0.49452 * 4 3 2 8 8 C 1.38977 * 118.92200 * 359.50723 * 7 4 3 9 9 N 1.39114 * 119.64042 * 180.27456 * 8 7 4 10 10 C 1.39766 * 120.00254 * 185.75705 * 9 8 7 11 11 C 1.39335 * 119.94910 * 33.35302 * 10 9 8 12 12 C 1.38484 * 120.42113 * 179.72417 * 11 10 9 13 13 C 1.37694 * 120.32463 * 0.54440 * 12 11 10 14 14 C 1.40750 * 119.89124 * 359.73392 * 13 12 11 15 15 C 1.41413 * 120.20437 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99958 * 26.15976 * 15 14 13 17 17 C 1.39926 * 119.99981 * 206.16173 * 15 14 13 18 18 N 1.30831 * 120.00027 * 20.70424 * 17 15 14 19 19 Si 1.86800 * 120.00081 * 200.71204 * 17 15 14 20 20 H 1.48494 * 109.47345 * 89.99824 * 19 17 15 21 21 H 1.48503 * 109.46704 * 209.99883 * 19 17 15 22 22 H 1.48503 * 109.47018 * 329.99423 * 19 17 15 23 23 C 1.38289 * 119.95290 * 213.61925 * 10 9 8 24 24 N 1.31922 * 119.49749 * 179.97438 * 2 1 3 25 25 H 1.09004 * 109.47057 * 270.02392 * 1 2 3 26 26 H 1.09006 * 109.47311 * 30.01818 * 1 2 3 27 27 H 1.08991 * 109.47423 * 150.02093 * 1 2 3 28 28 H 1.07997 * 120.42114 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.54176 * 179.78707 * 7 4 3 30 30 H 0.97000 * 120.00113 * 5.75527 * 9 8 7 31 31 H 1.07997 * 119.79103 * 359.97438 * 11 10 9 32 32 H 1.08003 * 119.83488 * 180.25380 * 12 11 10 33 33 H 1.07999 * 120.05238 * 179.74852 * 13 12 11 34 34 H 0.97005 * 120.00322 * 180.02562 * 18 17 15 35 35 H 1.07995 * 120.16069 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1861 1.2004 0.0000 4 6 3.5870 1.1922 0.0059 5 6 4.3294 2.4167 0.0115 6 7 4.9184 3.3882 0.0160 7 6 4.2402 -0.0422 0.0009 8 6 3.4794 -1.2052 0.0009 9 7 4.1146 -2.4429 0.0018 10 6 3.3624 -3.6146 -0.1197 11 6 2.2025 -3.6197 -0.8919 12 6 1.4529 -4.7766 -1.0235 13 6 1.8400 -5.9325 -0.3831 14 6 3.0061 -5.9409 0.4050 15 6 3.4095 -7.1242 1.0660 16 1 3.1203 -8.0876 0.6731 17 6 4.1832 -7.0466 2.2293 18 7 4.2005 -5.9426 2.9311 19 14 5.1917 -8.5194 2.7802 20 1 6.5449 -8.4478 2.1730 21 1 5.3121 -8.5110 4.2603 22 1 4.5195 -9.7701 2.3454 23 6 3.7673 -4.7656 0.5311 24 7 2.1565 -1.1482 0.0005 25 1 -0.3633 0.0004 1.0277 26 1 -0.3634 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6448 2.1350 -0.0004 29 1 5.3190 -0.0922 0.0017 30 1 5.0796 -2.4927 0.0866 31 1 1.8884 -2.7167 -1.3942 32 1 0.5577 -4.7710 -1.6278 33 1 1.2498 -6.8312 -0.4856 34 1 4.7372 -5.8887 3.7374 35 1 4.6639 -4.7617 1.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001612391521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:21 Heat of formation + Delta-G solvation = 77.141614 kcal Electronic energy + Delta-G solvation = -19889.294596 eV Core-core repulsion = 16851.478463 eV Total energy + Delta-G solvation = -3037.816132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58611 -39.53107 -37.90248 -36.75932 -35.23162 -33.99839 -32.48922 -31.39349 -29.90340 -27.98398 -27.09940 -25.37898 -23.79546 -22.66258 -22.10005 -19.76231 -18.84692 -18.15688 -17.37055 -17.03317 -16.80505 -16.40972 -16.05817 -15.85667 -15.06852 -14.67259 -14.58744 -14.48869 -14.18892 -14.12487 -13.96758 -13.74405 -13.39803 -13.01401 -12.92820 -12.78692 -12.74838 -12.47677 -12.11429 -11.80451 -11.65392 -11.29337 -10.94771 -10.63721 -10.29305 -9.60395 -9.21760 -8.62744 -8.17849 -6.28375 -0.31310 0.20599 1.09087 1.20982 1.40656 1.43693 1.52748 1.57441 1.97749 2.21914 2.24675 2.66760 2.77662 2.95777 3.48540 3.81836 3.98609 4.03676 4.18781 4.49843 4.59214 4.61452 4.88993 4.92867 4.94344 4.99764 5.08830 5.18907 5.22043 5.28699 5.38966 5.49952 5.66257 5.94312 6.13588 6.14778 6.17535 6.26317 6.51489 6.56940 6.83791 7.01637 7.08729 7.33745 8.38137 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022192 B = 0.004223 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.405544 B = 6629.515150 C = 7450.893725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.168 3.832 3 C -0.174 4.174 4 C 0.057 3.943 5 C 0.286 3.714 6 N -0.439 5.439 7 C -0.192 4.192 8 C 0.391 3.609 9 N -0.656 5.656 10 C 0.170 3.830 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.253 4.253 14 C 0.096 3.904 15 C -0.507 4.507 16 H 0.073 0.927 17 C 0.042 3.958 18 N -0.825 5.825 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.212 4.212 24 N -0.532 5.532 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.173 0.827 29 H 0.158 0.842 30 H 0.420 0.580 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.285 0.715 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.675 11.063 -3.885 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.028 3.972 3 C -0.199 4.199 4 C 0.046 3.954 5 C -0.030 4.030 6 N -0.115 5.115 7 C -0.220 4.220 8 C 0.157 3.843 9 N -0.280 5.280 10 C 0.076 3.924 11 C -0.241 4.241 12 C -0.102 4.102 13 C -0.274 4.274 14 C 0.093 3.907 15 C -0.537 4.537 16 H 0.091 0.909 17 C -0.173 4.173 18 N -0.451 5.451 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.196 1.196 22 H -0.184 1.184 23 C -0.235 4.235 24 N -0.249 5.249 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.088 0.912 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.258 0.742 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.222 11.810 -3.672 12.566 hybrid contribution 1.232 -0.606 0.596 1.497 sum -0.990 11.204 -3.076 11.661 Atomic orbital electron populations 1.20859 0.86362 1.04674 1.04155 1.21499 0.98234 0.86341 0.91088 1.21950 0.91639 1.00647 1.05619 1.15781 0.92426 0.85979 1.01204 1.25376 0.92462 0.92254 0.92905 1.81282 1.09322 1.11746 1.09111 1.21345 1.01742 0.89512 1.09393 1.18292 0.88683 0.85544 0.91733 1.42038 1.08930 1.01192 1.75890 1.17565 0.93794 0.85118 0.95970 1.20501 0.98832 0.98168 1.06577 1.20735 0.98640 0.92432 0.98367 1.21172 0.99362 0.98313 1.08509 1.17671 0.89929 0.92903 0.90191 1.19742 1.31168 0.93884 1.08903 0.90854 1.26628 0.95555 0.99886 0.95217 1.69916 1.32530 1.29695 1.12932 0.85314 0.78894 0.78512 0.77642 1.18723 1.19577 1.18356 1.20815 1.03200 0.93897 1.05558 1.67282 1.08275 1.31124 1.18266 0.89405 0.87260 0.91233 0.81002 0.82469 0.74220 0.86345 0.86204 0.88745 0.90446 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 10.16 71.23 0.72 -1.05 16 2 C 0.17 3.95 6.77 42.47 0.29 4.24 16 3 C -0.17 -3.26 9.48 22.65 0.21 -3.05 16 4 C 0.06 1.21 5.75 -21.24 -0.12 1.08 16 5 C 0.29 6.24 15.40 88.33 1.36 7.61 16 6 N -0.44 -11.24 18.54 19.01 0.35 -10.88 16 7 C -0.19 -4.60 9.69 22.79 0.22 -4.38 16 8 C 0.39 12.23 7.20 132.98 0.96 13.18 16 9 N -0.66 -23.29 5.47 -185.71 -1.02 -24.31 16 10 C 0.17 7.54 6.28 38.15 0.24 7.78 16 11 C -0.22 -9.41 8.58 22.59 0.19 -9.22 16 12 C -0.08 -3.61 10.02 22.20 0.22 -3.39 16 13 C -0.25 -12.45 9.79 22.76 0.22 -12.22 16 14 C 0.10 5.15 5.54 -21.31 -0.12 5.03 16 15 C -0.51 -27.38 9.03 23.46 0.21 -27.16 16 16 H 0.07 3.85 7.93 -2.91 -0.02 3.83 16 17 C 0.04 2.12 5.05 85.25 0.43 2.55 16 18 N -0.82 -43.11 11.25 21.82 0.25 -42.86 16 19 Si 0.98 38.18 29.61 68.60 2.03 40.21 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 C -0.21 -10.83 8.60 22.86 0.20 -10.63 16 24 N -0.53 -17.04 6.98 -181.48 -1.27 -18.31 16 25 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.11 1.10 8.07 -2.38 -0.02 1.08 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.42 12.78 8.81 -92.71 -0.82 11.97 16 31 H 0.12 4.70 6.26 -2.91 -0.02 4.68 16 32 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 34 H 0.29 13.54 8.30 -92.70 -0.77 12.77 16 35 H 0.10 5.20 6.40 -2.91 -0.02 5.18 16 Total: -1.00 -63.55 314.79 5.91 -57.64 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.32 Total: 28.14 kcal Atomic # 6 Polarization: -34.87 SS G_CDS: 5.24 Total: -29.63 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -1.69 Total: -96.36 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -63.55 5.91 -57.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612391521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.781 kcal (2) G-P(sol) polarization free energy of solvation -63.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds