Wall clock time and date at job start Tue Mar 31 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47365 * 114.42025 * 3 2 1 5 5 N 1.46493 * 109.47539 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00223 * 270.00023 * 5 4 3 7 7 C 1.50697 * 109.47335 * 270.00056 * 6 5 4 8 8 H 1.07998 * 119.99876 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00362 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99555 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00168 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47017 * 89.99579 * 11 9 7 13 13 H 1.48497 * 109.46685 * 209.99813 * 11 9 7 14 14 H 1.48505 * 109.46823 * 329.99457 * 11 9 7 15 15 C 1.34775 * 120.00135 * 89.99624 * 5 4 3 16 16 O 1.21279 * 120.00300 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99773 * 0.02562 * 15 5 4 18 18 N 1.46506 * 109.47289 * 179.97438 * 17 15 5 19 19 N 1.28942 * 126.47057 * 90.02181 * 18 17 15 20 20 N 1.28567 * 109.62924 * 179.97438 * 19 18 17 21 21 C 1.33387 * 109.89430 * 359.97438 * 20 19 18 22 22 N 1.39636 * 126.25551 * 179.97438 * 21 20 19 23 23 N 1.31675 * 107.48206 * 359.76242 * 21 20 19 24 24 H 1.09003 * 109.47442 * 354.41559 * 3 2 1 25 25 H 1.09001 * 109.46530 * 234.41997 * 3 2 1 26 26 H 1.09003 * 109.47221 * 59.99399 * 4 3 2 27 27 H 1.09002 * 109.46764 * 300.00089 * 4 3 2 28 28 H 1.09002 * 109.47248 * 29.99793 * 6 5 4 29 29 H 1.09004 * 109.47206 * 149.99350 * 6 5 4 30 30 H 0.97000 * 119.99408 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47438 * 59.99564 * 17 15 5 32 32 H 1.09004 * 109.47113 * 299.99819 * 17 15 5 33 33 H 0.96998 * 120.00004 * 0.02864 * 22 21 20 34 34 H 0.96999 * 119.99412 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5972 -1.3134 5 7 4.5827 0.5985 -1.3132 6 6 5.3142 1.7543 -0.7888 7 6 5.5647 2.7379 -1.9027 8 1 5.2145 2.5233 -2.9015 9 6 6.2420 3.9113 -1.6470 10 7 6.6689 4.1724 -0.4307 11 14 6.5531 5.1302 -3.0279 12 1 5.4228 6.0901 -3.1049 13 1 7.8131 5.8694 -2.7610 14 1 6.6710 4.3998 -4.3156 15 6 5.2576 -0.4638 -1.7954 16 8 6.4704 -0.4630 -1.7948 17 6 4.5051 -1.6527 -2.3354 18 7 5.4581 -2.6657 -2.7959 19 7 5.9565 -3.6249 -2.0928 20 7 6.7565 -4.3219 -2.8188 21 6 6.8021 -3.8203 -4.0540 22 7 7.5618 -4.3120 -5.1174 23 7 5.9961 -2.7796 -4.0883 24 1 2.9719 -1.0220 0.1000 25 1 2.9710 0.5988 0.8358 26 1 2.7539 1.6199 -1.4134 27 1 2.7547 -0.0009 -2.1492 28 1 4.7246 2.2333 -0.0070 29 1 6.2668 1.4240 -0.3745 30 1 7.1451 4.9982 -0.2508 31 1 3.8786 -1.3378 -3.1699 32 1 3.8784 -2.0737 -1.5491 33 1 8.1250 -5.0916 -4.9914 34 1 7.5264 -3.8738 -5.9820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626451789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:12 Heat of formation + Delta-G solvation = 133.602513 kcal Electronic energy + Delta-G solvation = -21095.974235 eV Core-core repulsion = 17682.049919 eV Total energy + Delta-G solvation = -3413.924316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.85487 -39.54947 -37.00922 -35.67812 -35.36357 -33.69021 -32.91768 -31.35546 -31.01906 -29.12122 -27.01161 -24.25609 -23.75669 -22.47277 -22.24363 -19.18515 -17.91852 -17.79156 -17.10798 -16.78520 -16.55923 -16.13901 -15.88466 -15.34314 -14.85070 -14.81972 -14.16618 -13.89712 -13.65327 -13.30869 -12.82115 -12.58432 -12.51944 -12.20781 -11.88872 -11.88050 -11.68915 -11.39058 -11.10001 -10.98608 -10.71929 -10.57348 -10.48068 -10.27858 -9.82718 -9.37031 -8.65727 -8.54888 -8.08036 -6.16962 -4.22149 1.20161 1.75931 2.61539 2.65879 2.72553 2.91025 3.14592 3.23882 3.31710 3.34591 3.44894 3.97979 4.26070 4.34739 4.59948 4.74319 4.87000 4.92927 4.98720 5.18948 5.27870 5.39578 5.66985 5.77518 5.90532 6.23871 6.73189 7.00303 7.16346 7.26657 7.33444 7.48501 7.78063 7.96289 8.06130 8.53323 8.54563 8.82181 9.43845 10.91292 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.005818 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.324581 B = 4811.536827 C = 6764.829097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.052 4.052 4 C 0.111 3.889 5 N -0.588 5.588 6 C 0.246 3.754 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.496 3.504 16 O -0.511 6.511 17 C 0.115 3.885 18 N -0.181 5.181 19 N 0.025 4.975 20 N -0.345 5.345 21 C 0.441 3.559 22 N -0.815 5.815 23 N -0.342 5.342 24 H 0.107 0.893 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.418 0.582 34 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 -12.950 -4.445 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.103 4.103 3 C -0.094 4.094 4 C -0.016 4.016 5 N -0.320 5.320 6 C 0.128 3.872 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.279 3.721 16 O -0.385 6.385 17 C -0.011 4.011 18 N -0.094 5.094 19 N 0.030 4.970 20 N -0.228 5.228 21 C 0.067 3.933 22 N -0.374 5.374 23 N -0.193 5.193 24 H 0.125 0.875 25 H 0.139 0.861 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.249 0.751 34 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.168 -12.671 -3.712 14.574 hybrid contribution 1.006 0.804 -1.472 1.956 sum -5.162 -11.867 -5.184 13.941 Atomic orbital electron populations 1.81233 1.13019 1.09025 1.08550 1.29027 0.95021 0.93009 0.93249 1.19903 0.81531 1.05059 1.02876 1.21439 0.81751 1.03938 0.94426 1.48191 1.05059 1.18046 1.60741 1.19444 0.92714 0.80527 0.94555 1.21380 1.37204 1.02947 0.95614 0.92249 1.24909 0.95125 0.98062 0.95767 1.69914 1.38047 1.25519 1.19562 0.86501 0.77787 0.80935 0.82270 1.20536 1.21061 1.19862 1.20106 0.88426 0.83631 0.79928 1.90798 1.13250 1.80099 1.54323 1.22087 0.89109 0.86717 1.03200 1.52410 1.31842 1.20721 1.04454 1.78254 1.03008 0.95537 1.20219 1.75184 1.19737 1.26283 1.01557 1.21611 0.92383 0.90000 0.89259 1.40864 1.50651 1.36499 1.09341 1.78894 1.19888 1.20993 0.99561 0.87465 0.86097 0.87961 0.90538 0.94172 0.93396 0.92550 0.84521 0.84660 0.75078 0.75156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.90 18.54 42.15 0.78 -5.12 16 2 C 0.22 2.24 15.43 -20.76 -0.32 1.92 16 3 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 4 C 0.11 1.21 5.17 -4.05 -0.02 1.19 16 5 N -0.59 -9.71 2.46 -175.07 -0.43 -10.14 16 6 C 0.25 5.50 5.16 -5.20 -0.03 5.47 16 7 C -0.53 -13.71 9.39 -34.44 -0.32 -14.03 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.90 13.29 55.43 0.74 -24.17 16 11 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.50 8.60 7.74 -10.98 -0.09 8.51 16 16 O -0.51 -11.85 16.01 5.56 0.09 -11.76 16 17 C 0.11 1.39 5.78 -5.19 -0.03 1.36 16 18 N -0.18 -2.81 3.83 -11.65 -0.04 -2.86 16 19 N 0.02 0.41 13.24 60.35 0.80 1.21 16 20 N -0.35 -5.58 12.32 30.02 0.37 -5.21 16 21 C 0.44 6.50 9.63 -320.88 -3.09 3.41 16 22 N -0.82 -7.84 9.13 30.04 0.27 -7.56 16 23 N -0.34 -5.55 12.79 30.03 0.38 -5.16 16 24 H 0.11 0.65 7.22 -51.93 -0.37 0.27 16 25 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 27 H 0.08 0.61 6.44 -51.93 -0.33 0.28 16 28 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.14 1.28 7.40 -51.93 -0.38 0.89 16 32 H 0.14 1.04 7.19 -51.93 -0.37 0.67 16 33 H 0.42 2.96 8.96 -40.82 -0.37 2.59 16 34 H 0.42 3.14 8.96 -40.82 -0.37 2.77 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -36.57 316.24 -4.86 -41.43 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -3.39 Total: -0.10 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -4.17 Total: 8.84 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 2.87 Total: -59.02 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.57 -4.86 -41.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626451789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.031 kcal (2) G-P(sol) polarization free energy of solvation -36.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds