Wall clock time and date at job start Tue Mar 31 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47365 * 114.42025 * 3 2 1 5 5 N 1.46493 * 109.47539 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00223 * 270.00023 * 5 4 3 7 7 C 1.50697 * 109.47335 * 270.00056 * 6 5 4 8 8 H 1.07998 * 119.99876 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00362 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99555 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00168 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47017 * 89.99579 * 11 9 7 13 13 H 1.48497 * 109.46685 * 209.99813 * 11 9 7 14 14 H 1.48505 * 109.46823 * 329.99457 * 11 9 7 15 15 C 1.34775 * 120.00135 * 89.99624 * 5 4 3 16 16 O 1.21279 * 120.00300 * 180.02562 * 15 5 4 17 17 C 1.50703 * 119.99773 * 0.02562 * 15 5 4 18 18 N 1.46506 * 109.47289 * 179.97438 * 17 15 5 19 19 N 1.28942 * 126.47057 * 90.02181 * 18 17 15 20 20 N 1.28567 * 109.62924 * 179.97438 * 19 18 17 21 21 C 1.33387 * 109.89430 * 359.97438 * 20 19 18 22 22 N 1.39636 * 126.25551 * 179.97438 * 21 20 19 23 23 N 1.31675 * 107.48206 * 359.76242 * 21 20 19 24 24 H 1.09003 * 109.47442 * 354.41559 * 3 2 1 25 25 H 1.09001 * 109.46530 * 234.41997 * 3 2 1 26 26 H 1.09003 * 109.47221 * 59.99399 * 4 3 2 27 27 H 1.09002 * 109.46764 * 300.00089 * 4 3 2 28 28 H 1.09002 * 109.47248 * 29.99793 * 6 5 4 29 29 H 1.09004 * 109.47206 * 149.99350 * 6 5 4 30 30 H 0.97000 * 119.99408 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.47438 * 59.99564 * 17 15 5 32 32 H 1.09004 * 109.47113 * 299.99819 * 17 15 5 33 33 H 0.96998 * 120.00004 * 0.02864 * 22 21 20 34 34 H 0.96999 * 119.99412 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5972 -1.3134 5 7 4.5827 0.5985 -1.3132 6 6 5.3142 1.7543 -0.7888 7 6 5.5647 2.7379 -1.9027 8 1 5.2145 2.5233 -2.9015 9 6 6.2420 3.9113 -1.6470 10 7 6.6689 4.1724 -0.4307 11 14 6.5531 5.1302 -3.0279 12 1 5.4228 6.0901 -3.1049 13 1 7.8131 5.8694 -2.7610 14 1 6.6710 4.3998 -4.3156 15 6 5.2576 -0.4638 -1.7954 16 8 6.4704 -0.4630 -1.7948 17 6 4.5051 -1.6527 -2.3354 18 7 5.4581 -2.6657 -2.7959 19 7 5.9565 -3.6249 -2.0928 20 7 6.7565 -4.3219 -2.8188 21 6 6.8021 -3.8203 -4.0540 22 7 7.5618 -4.3120 -5.1174 23 7 5.9961 -2.7796 -4.0883 24 1 2.9719 -1.0220 0.1000 25 1 2.9710 0.5988 0.8358 26 1 2.7539 1.6199 -1.4134 27 1 2.7547 -0.0009 -2.1492 28 1 4.7246 2.2333 -0.0070 29 1 6.2668 1.4240 -0.3745 30 1 7.1451 4.9982 -0.2508 31 1 3.8786 -1.3378 -3.1699 32 1 3.8784 -2.0737 -1.5491 33 1 8.1250 -5.0916 -4.9914 34 1 7.5264 -3.8738 -5.9820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626451789.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:10 Heat of formation + Delta-G solvation = 106.616620 kcal Electronic energy + Delta-G solvation = -21097.144431 eV Core-core repulsion = 17682.049919 eV Total energy + Delta-G solvation = -3415.094512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.118 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.98049 -40.89498 -38.01423 -36.84447 -36.50641 -35.01232 -34.57006 -32.44349 -32.16314 -30.41587 -28.59559 -25.36356 -25.26190 -23.79660 -23.38706 -20.48913 -18.94563 -18.90537 -18.41819 -18.17124 -17.70820 -17.29218 -17.01095 -16.71846 -16.28426 -15.85448 -15.61087 -14.92095 -14.81713 -14.50644 -14.34062 -13.67850 -13.63184 -13.52767 -13.19341 -13.00637 -12.92618 -12.79739 -12.70441 -12.52438 -12.19243 -11.85412 -11.73763 -11.70349 -11.65328 -10.74322 -10.58734 -9.64321 -9.58216 -8.19433 -6.30835 0.03137 0.75441 1.39197 1.42037 1.50215 1.54008 1.57316 1.80198 1.90963 2.14640 2.29245 2.43112 3.05393 3.14282 3.26060 3.54419 3.91230 3.95546 4.13022 4.14853 4.42216 4.60494 4.69234 4.87459 5.01530 5.08594 5.24123 5.32946 5.55993 5.82812 6.10532 6.13009 6.56743 6.60061 6.68309 6.79020 7.21884 7.41052 7.45467 8.87546 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011191 B = 0.005818 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.324581 B = 4811.536827 C = 6764.829097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.247 3.753 3 C -0.042 4.042 4 C 0.104 3.896 5 N -0.584 5.584 6 C 0.260 3.740 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.265 1.265 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.493 3.507 16 O -0.581 6.581 17 C 0.117 3.883 18 N -0.183 5.183 19 N 0.015 4.985 20 N -0.364 5.364 21 C 0.435 3.565 22 N -0.794 5.794 23 N -0.368 5.368 24 H 0.143 0.857 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.044 0.956 29 H 0.002 0.998 30 H 0.265 0.735 31 H 0.173 0.827 32 H 0.188 0.812 33 H 0.430 0.570 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 -13.902 -5.570 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.070 4.070 3 C -0.082 4.082 4 C -0.020 4.020 5 N -0.315 5.315 6 C 0.139 3.861 7 C -0.579 4.579 8 H 0.074 0.926 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.190 1.190 13 H -0.213 1.213 14 H -0.200 1.200 15 C 0.279 3.721 16 O -0.460 6.460 17 C -0.007 4.007 18 N -0.097 5.097 19 N 0.020 4.980 20 N -0.246 5.246 21 C 0.061 3.939 22 N -0.355 5.355 23 N -0.221 5.221 24 H 0.161 0.839 25 H 0.140 0.860 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.190 0.810 32 H 0.205 0.795 33 H 0.264 0.736 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.598 -13.648 -4.864 16.360 hybrid contribution 1.468 1.081 -1.129 2.144 sum -6.130 -12.567 -5.993 15.212 Atomic orbital electron populations 1.81284 1.14601 1.10935 1.10132 1.29115 0.94892 0.91323 0.91707 1.19883 0.80040 1.06995 1.01327 1.21745 0.78062 1.04774 0.97431 1.47991 1.07186 1.16347 1.59946 1.18871 0.91630 0.81825 0.93741 1.21750 1.36421 1.03465 0.96225 0.92595 1.25689 0.95262 1.00027 0.97728 1.70018 1.39156 1.26088 1.21251 0.85600 0.77863 0.79050 0.79423 1.18983 1.21313 1.20048 1.20960 0.87870 0.84687 0.78612 1.90771 1.16513 1.81629 1.57059 1.22464 0.88090 0.84206 1.05924 1.52641 1.31974 1.20858 1.04227 1.78171 1.03292 0.96042 1.20511 1.75139 1.20258 1.27003 1.02220 1.22004 0.92426 0.89663 0.89798 1.40952 1.49408 1.36523 1.08635 1.78814 1.21024 1.21909 1.00357 0.83923 0.86017 0.88969 0.86393 0.93843 0.97944 0.92608 0.80958 0.79501 0.73607 0.73857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.16 18.54 20.01 0.37 -11.79 16 2 C 0.25 4.40 15.43 89.44 1.38 5.78 16 3 C -0.04 -0.55 6.03 28.79 0.17 -0.37 16 4 C 0.10 1.95 5.17 86.38 0.45 2.39 16 5 N -0.58 -18.46 2.46 -826.18 -2.03 -20.49 16 6 C 0.26 11.81 5.16 85.63 0.44 12.25 16 7 C -0.54 -27.99 9.39 25.60 0.24 -27.75 16 8 H 0.06 2.87 7.81 -2.91 -0.02 2.84 16 9 C 0.01 0.66 5.46 84.65 0.46 1.12 16 10 N -0.93 -52.65 13.29 21.45 0.28 -52.36 16 11 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 12 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 13 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 15 C 0.49 16.40 7.74 87.66 0.68 17.08 16 16 O -0.58 -27.39 16.01 -3.03 -0.05 -27.44 16 17 C 0.12 2.43 5.78 85.63 0.50 2.92 16 18 N -0.18 -5.31 3.83 -190.77 -0.73 -6.05 16 19 N 0.01 0.47 13.24 37.02 0.49 0.96 16 20 N -0.36 -11.37 12.32 -58.92 -0.73 -12.09 16 21 C 0.43 12.27 9.63 260.81 2.51 14.78 16 22 N -0.79 -13.96 9.13 -58.88 -0.54 -14.50 16 23 N -0.37 -11.40 12.79 -58.91 -0.75 -12.16 16 24 H 0.14 0.98 7.22 -2.39 -0.02 0.96 16 25 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 27 H 0.12 1.29 6.44 -2.39 -0.02 1.27 16 28 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.00 0.13 7.42 -2.38 -0.02 0.11 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.17 2.37 7.40 -2.39 -0.02 2.35 16 32 H 0.19 1.85 7.19 -2.38 -0.02 1.84 16 33 H 0.43 5.34 8.96 -92.71 -0.83 4.50 16 34 H 0.43 5.66 8.96 -92.71 -0.83 4.83 16 Total: -1.00 -83.91 316.24 4.70 -79.21 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -0.48 Total: 3.60 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 6.83 Total: 28.21 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -3.63 Total: -128.48 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.05 Total: -27.44 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -83.91 4.70 -79.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626451789.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.829 kcal (2) G-P(sol) polarization free energy of solvation -83.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds