Wall clock time and date at job start Tue Mar 31 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38347 * 119.38823 * 2 1 4 4 C 1.38374 * 119.50815 * 180.02562 * 3 2 1 5 5 C 1.39965 * 118.36248 * 359.97438 * 4 3 2 6 6 C 1.43198 * 120.61573 * 180.02562 * 5 4 3 7 7 N 4.80317 * 135.13844 * 359.97438 * 3 1 2 8 8 C 1.40550 * 118.77719 * 359.97438 * 5 4 3 9 9 N 1.38501 * 119.82805 * 180.02562 * 8 5 4 10 10 C 1.39778 * 120.00483 * 174.77938 * 9 8 5 11 11 C 1.39341 * 119.94790 * 325.87897 * 10 9 8 12 12 C 1.38481 * 120.42067 * 179.76253 * 11 10 9 13 13 C 1.37688 * 120.32571 * 0.51666 * 12 11 10 14 14 C 1.40751 * 119.89255 * 359.74163 * 13 12 11 15 15 C 1.41412 * 120.20740 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00024 * 205.20909 * 15 14 13 17 17 C 1.39935 * 119.99787 * 25.21178 * 15 14 13 18 18 N 1.30832 * 120.00077 * 16.77781 * 17 15 14 19 19 Si 1.86796 * 120.00115 * 196.77134 * 17 15 14 20 20 H 1.48500 * 109.46788 * 59.99932 * 19 17 15 21 21 H 1.48493 * 109.47413 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47111 * 300.00546 * 19 17 15 23 23 C 1.38279 * 119.95342 * 146.15137 * 10 9 8 24 24 N 1.31864 * 119.39280 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47270 * 270.02053 * 1 2 3 26 26 H 1.08997 * 109.47233 * 30.02414 * 1 2 3 27 27 H 1.09000 * 109.47178 * 150.02203 * 1 2 3 28 28 H 1.08008 * 120.24772 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.81993 * 179.97438 * 4 3 2 30 30 H 0.97001 * 119.99440 * 354.77614 * 9 8 5 31 31 H 1.08001 * 119.78349 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.83492 * 180.25860 * 12 11 10 33 33 H 1.07998 * 120.04870 * 179.76444 * 13 12 11 34 34 H 0.96999 * 120.00113 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.16077 * 359.96055 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1859 1.2054 0.0000 4 6 3.5696 1.2083 -0.0005 5 6 4.2371 -0.0219 -0.0005 6 6 5.6681 -0.0752 -0.0005 7 7 6.8033 -0.1174 0.0015 8 6 3.4770 -1.2041 0.0006 9 7 4.1150 -2.4334 0.0012 10 6 3.3672 -3.6090 0.1124 11 6 2.2095 -3.6263 0.8876 12 6 1.4585 -4.7843 1.0007 13 6 1.8539 -5.9350 0.3563 14 6 3.0240 -5.9342 -0.4260 15 6 3.4360 -7.1121 -1.0912 16 1 4.4773 -7.2566 -1.3384 17 6 2.4943 -8.0905 -1.4292 18 7 1.2195 -7.7962 -1.4378 19 14 3.0573 -9.8166 -1.8682 20 1 3.7898 -10.4057 -0.7185 21 1 1.8751 -10.6572 -2.1856 22 1 3.9548 -9.7590 -3.0498 23 6 3.7804 -4.7547 -0.5424 24 7 2.1542 -1.1489 0.0005 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6399 2.1374 0.0004 29 1 4.1210 2.1370 -0.0010 30 1 5.0809 -2.4784 -0.0757 31 1 1.8936 -2.7296 1.4001 32 1 0.5605 -4.7859 1.6007 33 1 1.2669 -6.8366 0.4506 34 1 0.5668 -8.4743 -1.6725 35 1 4.6796 -4.7435 -1.1405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642699431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:24 Heat of formation + Delta-G solvation = 88.417612 kcal Electronic energy + Delta-G solvation = -19978.371592 eV Core-core repulsion = 16941.044424 eV Total energy + Delta-G solvation = -3037.327168 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53700 -37.90608 -36.62612 -35.46177 -33.42524 -32.84569 -31.22540 -29.83418 -28.59145 -27.24319 -25.28223 -23.12637 -22.90426 -20.87756 -20.53021 -18.93820 -17.83587 -17.00145 -16.28583 -15.35996 -15.09225 -14.92113 -14.55401 -14.33341 -13.76040 -13.53017 -13.37321 -13.02614 -12.92074 -12.74981 -12.49535 -12.26193 -12.23170 -11.93620 -11.68578 -11.37630 -11.14655 -10.94938 -10.56404 -10.22377 -10.10839 -9.64590 -9.42931 -9.22132 -9.05104 -8.22130 -7.47748 -6.82089 -6.68454 -4.37401 0.74799 1.41202 2.65469 2.80973 2.91803 3.06219 3.06836 3.09121 3.23391 3.36495 3.92490 3.94336 3.99805 4.48724 4.64062 4.67802 5.04984 5.19242 5.40284 5.57073 5.63478 5.66530 5.90231 6.02380 6.05093 6.22578 6.46097 6.59158 6.87191 6.89895 6.99930 7.05718 7.23509 7.47532 7.53083 7.66449 7.86686 8.02028 8.08008 8.29062 8.37201 8.62489 8.88103 8.94279 10.19558 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.004330 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.988067 B = 6464.643377 C = 7378.040519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.209 3.791 3 C -0.246 4.246 4 C 0.019 3.981 5 C -0.177 4.177 6 C 0.266 3.734 7 N -0.433 5.433 8 C 0.456 3.544 9 N -0.641 5.641 10 C 0.155 3.845 11 C -0.215 4.215 12 C -0.096 4.096 13 C -0.166 4.166 14 C 0.123 3.877 15 C -0.466 4.466 16 H 0.076 0.924 17 C 0.078 3.922 18 N -0.794 5.794 19 Si 0.908 3.092 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.266 1.266 23 C -0.244 4.244 24 N -0.510 5.510 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.409 0.591 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.281 0.719 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 13.255 2.460 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.065 3.935 3 C -0.269 4.269 4 C -0.009 4.009 5 C -0.189 4.189 6 C -0.049 4.049 7 N -0.110 5.110 8 C 0.216 3.784 9 N -0.260 5.260 10 C 0.063 3.937 11 C -0.236 4.236 12 C -0.115 4.115 13 C -0.185 4.185 14 C 0.120 3.880 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.420 5.420 19 Si 0.732 3.268 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.266 4.266 24 N -0.226 5.226 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.246 0.754 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.092 0.908 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.589 12.124 2.408 12.463 hybrid contribution 0.675 -0.003 -0.410 0.790 sum -0.913 12.121 1.998 12.319 Atomic orbital electron populations 1.20829 0.88537 1.03915 1.03467 1.21372 0.97020 0.87420 0.87647 1.21520 0.93911 0.99212 1.12262 1.21249 0.94222 0.95607 0.89826 1.16201 0.85006 0.94432 1.23258 1.25409 0.92298 0.94149 0.93007 1.81253 1.11775 1.06823 1.11107 1.18258 0.88330 0.84574 0.87226 1.42282 1.08727 1.02212 1.72752 1.17427 0.94106 0.83761 0.98432 1.20263 0.98402 0.98216 1.06708 1.20557 0.97928 0.93360 0.99634 1.21375 0.99874 0.97578 0.99717 1.17334 0.90648 0.90877 0.89112 1.19486 0.95300 1.01026 1.33729 0.90600 1.25865 0.94425 1.00512 0.93209 1.69817 1.01964 1.35043 1.35133 0.86377 0.79099 0.81459 0.79835 1.18849 1.20328 1.19093 1.20705 1.05153 0.92875 1.07862 1.67621 1.06225 1.28516 1.20258 0.89861 0.90450 0.89741 0.84444 0.84367 0.75423 0.87802 0.89042 0.86337 0.90847 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.16 36.01 0.37 -0.69 16 2 C 0.21 2.62 6.78 -82.54 -0.56 2.06 16 3 C -0.25 -2.45 9.71 -39.49 -0.38 -2.83 16 4 C 0.02 0.20 9.90 -38.88 -0.39 -0.19 16 5 C -0.18 -2.43 5.77 -106.45 -0.61 -3.05 16 6 C 0.27 3.87 14.13 -22.47 -0.32 3.56 16 7 N -0.43 -6.95 18.54 41.84 0.78 -6.18 16 8 C 0.46 7.57 7.21 -154.97 -1.12 6.46 16 9 N -0.64 -11.86 5.38 -9.81 -0.05 -11.92 16 10 C 0.15 3.42 6.26 -83.81 -0.53 2.89 16 11 C -0.21 -4.73 8.58 -39.08 -0.34 -5.07 16 12 C -0.10 -2.20 10.02 -39.69 -0.40 -2.59 16 13 C -0.17 -4.22 8.69 -38.83 -0.34 -4.56 16 14 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 15 C -0.47 -12.25 9.05 -37.74 -0.34 -12.59 16 16 H 0.08 1.93 7.90 -52.49 -0.41 1.51 16 17 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 18 N -0.79 -20.31 10.94 55.55 0.61 -19.70 16 19 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.24 -5.91 9.70 -38.68 -0.38 -6.29 16 24 N -0.51 -8.45 7.02 -8.38 -0.06 -8.51 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.41 6.99 7.67 -40.82 -0.31 6.68 16 31 H 0.10 2.15 6.31 -52.49 -0.33 1.82 16 32 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 34 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -28.84 312.40 -8.53 -37.37 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.47 Total: 9.10 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -6.01 Total: -18.41 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 1.27 Total: -46.31 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.84 -8.53 -37.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642699431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.793 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds