Wall clock time and date at job start Tue Mar 31 2020 00:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38347 * 119.38823 * 2 1 4 4 C 1.38374 * 119.50815 * 180.02562 * 3 2 1 5 5 C 1.39965 * 118.36248 * 359.97438 * 4 3 2 6 6 C 1.43198 * 120.61573 * 180.02562 * 5 4 3 7 7 N 4.80317 * 135.13844 * 359.97438 * 3 1 2 8 8 C 1.40550 * 118.77719 * 359.97438 * 5 4 3 9 9 N 1.38501 * 119.82805 * 180.02562 * 8 5 4 10 10 C 1.39778 * 120.00483 * 174.77938 * 9 8 5 11 11 C 1.39341 * 119.94790 * 325.87897 * 10 9 8 12 12 C 1.38481 * 120.42067 * 179.76253 * 11 10 9 13 13 C 1.37688 * 120.32571 * 0.51666 * 12 11 10 14 14 C 1.40751 * 119.89255 * 359.74163 * 13 12 11 15 15 C 1.41412 * 120.20740 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00024 * 205.20909 * 15 14 13 17 17 C 1.39935 * 119.99787 * 25.21178 * 15 14 13 18 18 N 1.30832 * 120.00077 * 16.77781 * 17 15 14 19 19 Si 1.86796 * 120.00115 * 196.77134 * 17 15 14 20 20 H 1.48500 * 109.46788 * 59.99932 * 19 17 15 21 21 H 1.48493 * 109.47413 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47111 * 300.00546 * 19 17 15 23 23 C 1.38279 * 119.95342 * 146.15137 * 10 9 8 24 24 N 1.31864 * 119.39280 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47270 * 270.02053 * 1 2 3 26 26 H 1.08997 * 109.47233 * 30.02414 * 1 2 3 27 27 H 1.09000 * 109.47178 * 150.02203 * 1 2 3 28 28 H 1.08008 * 120.24772 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.81993 * 179.97438 * 4 3 2 30 30 H 0.97001 * 119.99440 * 354.77614 * 9 8 5 31 31 H 1.08001 * 119.78349 * 0.02562 * 11 10 9 32 32 H 1.08000 * 119.83492 * 180.25860 * 12 11 10 33 33 H 1.07998 * 120.04870 * 179.76444 * 13 12 11 34 34 H 0.96999 * 120.00113 * 179.97438 * 18 17 15 35 35 H 1.07995 * 120.16077 * 359.96055 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1859 1.2054 0.0000 4 6 3.5696 1.2083 -0.0005 5 6 4.2371 -0.0219 -0.0005 6 6 5.6681 -0.0752 -0.0005 7 7 6.8033 -0.1174 0.0015 8 6 3.4770 -1.2041 0.0006 9 7 4.1150 -2.4334 0.0012 10 6 3.3672 -3.6090 0.1124 11 6 2.2095 -3.6263 0.8876 12 6 1.4585 -4.7843 1.0007 13 6 1.8539 -5.9350 0.3563 14 6 3.0240 -5.9342 -0.4260 15 6 3.4360 -7.1121 -1.0912 16 1 4.4773 -7.2566 -1.3384 17 6 2.4943 -8.0905 -1.4292 18 7 1.2195 -7.7962 -1.4378 19 14 3.0573 -9.8166 -1.8682 20 1 3.7898 -10.4057 -0.7185 21 1 1.8751 -10.6572 -2.1856 22 1 3.9548 -9.7590 -3.0498 23 6 3.7804 -4.7547 -0.5424 24 7 2.1542 -1.1489 0.0005 25 1 -0.3634 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6399 2.1374 0.0004 29 1 4.1210 2.1370 -0.0010 30 1 5.0809 -2.4784 -0.0757 31 1 1.8936 -2.7296 1.4001 32 1 0.5605 -4.7859 1.6007 33 1 1.2669 -6.8366 0.4506 34 1 0.5668 -8.4743 -1.6725 35 1 4.6796 -4.7435 -1.1405 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642699431.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:24 Heat of formation + Delta-G solvation = 74.006816 kcal Electronic energy + Delta-G solvation = -19978.996491 eV Core-core repulsion = 16941.044424 eV Total energy + Delta-G solvation = -3037.952067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66981 -39.55628 -37.80861 -36.96749 -35.14082 -33.91251 -32.44057 -31.68797 -29.92220 -28.47749 -27.16144 -24.38238 -23.91888 -22.59902 -22.20315 -20.06947 -19.49070 -18.21439 -17.76235 -17.08620 -16.56146 -16.28895 -15.93555 -15.47923 -15.08832 -14.81735 -14.61072 -14.52542 -14.10368 -14.06324 -13.91347 -13.61333 -13.38536 -13.11627 -12.90528 -12.85612 -12.80003 -12.69017 -12.16666 -11.90366 -11.63836 -11.29279 -11.01551 -10.65270 -10.28932 -9.59674 -9.35600 -8.63350 -8.32261 -6.33938 -0.28903 0.38951 1.01909 1.19205 1.38591 1.49510 1.50610 1.56927 1.92588 2.04925 2.22661 2.74990 2.82063 2.95647 3.46862 3.74727 3.82884 4.00378 4.32868 4.46385 4.51546 4.75982 4.84924 4.92521 4.97361 5.05750 5.10963 5.12950 5.17295 5.30612 5.34050 5.43363 5.66564 5.86073 5.93986 6.13292 6.15953 6.36146 6.36914 6.49448 6.73538 6.95510 7.02610 7.22343 8.36019 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.004330 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.988067 B = 6464.643377 C = 7378.040519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.192 3.808 3 C -0.217 4.217 4 C 0.028 3.972 5 C -0.176 4.176 6 C 0.282 3.718 7 N -0.463 5.463 8 C 0.431 3.569 9 N -0.654 5.654 10 C 0.172 3.828 11 C -0.212 4.212 12 C -0.093 4.093 13 C -0.195 4.195 14 C 0.096 3.904 15 C -0.504 4.504 16 H 0.071 0.929 17 C 0.038 3.962 18 N -0.824 5.824 19 Si 0.981 3.019 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.267 4.267 24 N -0.550 5.550 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.185 0.815 29 H 0.178 0.822 30 H 0.412 0.588 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.429 16.047 2.658 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.051 3.949 3 C -0.239 4.239 4 C 0.001 3.999 5 C -0.188 4.188 6 C -0.032 4.032 7 N -0.140 5.140 8 C 0.194 3.806 9 N -0.276 5.276 10 C 0.078 3.922 11 C -0.234 4.234 12 C -0.112 4.112 13 C -0.215 4.215 14 C 0.094 3.906 15 C -0.534 4.534 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.450 5.450 19 Si 0.801 3.199 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.187 1.187 23 C -0.289 4.289 24 N -0.267 5.267 25 H 0.115 0.885 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.202 0.798 29 H 0.196 0.804 30 H 0.248 0.752 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.450 14.999 2.611 15.421 hybrid contribution 0.851 -0.539 -0.446 1.101 sum -1.599 14.461 2.165 14.709 Atomic orbital electron populations 1.20943 0.86627 1.04517 1.04473 1.22006 0.98389 0.87388 0.87143 1.22021 0.93717 0.99902 1.08236 1.21766 0.94736 0.95581 0.87848 1.16321 0.84299 0.94811 1.23331 1.25528 0.92369 0.93208 0.92119 1.81270 1.12711 1.07826 1.12228 1.18415 0.88945 0.84326 0.88939 1.42112 1.08616 1.02049 1.74806 1.17421 0.93818 0.84466 0.96480 1.20462 0.98232 0.98336 1.06322 1.20829 0.98612 0.92810 0.98962 1.21294 1.00378 0.98093 1.01692 1.17673 0.91524 0.91766 0.89684 1.19737 0.95583 1.02552 1.35538 0.91063 1.26689 0.94242 1.04156 0.92589 1.69873 1.02997 1.36525 1.35599 0.85281 0.78915 0.76164 0.79493 1.18540 1.18940 1.18710 1.20804 1.05459 0.93584 1.09071 1.67514 1.06439 1.31226 1.21553 0.88540 0.86902 0.92084 0.79769 0.80429 0.75156 0.86149 0.86663 0.87890 0.90123 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.16 71.24 0.72 -1.01 16 2 C 0.19 4.20 6.78 42.58 0.29 4.49 16 3 C -0.22 -3.17 9.71 22.33 0.22 -2.95 16 4 C 0.03 0.46 9.90 22.72 0.22 0.68 16 5 C -0.18 -4.45 5.77 -21.05 -0.12 -4.57 16 6 C 0.28 7.83 14.13 88.33 1.25 9.08 16 7 N -0.46 -14.54 18.54 19.00 0.35 -14.19 16 8 C 0.43 13.94 7.21 133.58 0.96 14.91 16 9 N -0.65 -24.60 5.38 -184.96 -1.00 -25.59 16 10 C 0.17 7.80 6.26 38.15 0.24 8.04 16 11 C -0.21 -9.46 8.58 22.59 0.19 -9.26 16 12 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 13 C -0.19 -10.39 8.69 22.75 0.20 -10.19 16 14 C 0.10 5.34 5.57 -21.31 -0.12 5.22 16 15 C -0.50 -27.94 9.05 23.46 0.21 -27.73 16 16 H 0.07 3.83 7.90 -2.91 -0.02 3.81 16 17 C 0.04 1.96 5.16 85.25 0.44 2.40 16 18 N -0.82 -43.61 10.94 21.82 0.24 -43.37 16 19 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 20 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 21 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 C -0.27 -13.61 9.70 22.86 0.22 -13.39 16 24 N -0.55 -17.51 7.02 -180.43 -1.27 -18.77 16 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.19 1.06 8.06 -2.91 -0.02 1.03 16 29 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.41 14.50 7.67 -92.71 -0.71 13.79 16 31 H 0.12 4.93 6.31 -2.91 -0.02 4.91 16 32 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 33 H 0.10 5.71 6.17 -2.91 -0.02 5.69 16 34 H 0.29 13.76 8.30 -92.71 -0.77 12.99 16 35 H 0.09 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -66.97 312.40 5.94 -61.02 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.43 Total: 28.39 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 5.15 Total: -28.42 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -1.67 Total: -101.92 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -66.97 5.94 -61.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642699431.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.032 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds