Wall clock time and date at job start Tue Mar 31 2020 00:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.99678 * 2 1 4 4 C 1.54321 * 109.88164 * 121.09618 * 2 1 3 5 5 H 1.09000 * 110.72148 * 215.76469 * 4 2 1 6 6 C 1.50699 * 110.72031 * 338.85947 * 4 2 1 7 7 C 1.38242 * 119.98456 * 75.79580 * 6 4 2 8 8 C 1.38215 * 120.01314 * 179.72591 * 7 6 4 9 9 C 1.38351 * 119.98365 * 0.54428 * 8 7 6 10 10 Cl 1.73604 * 120.01415 * 179.70455 * 9 8 7 11 11 C 1.38357 * 119.97711 * 359.72791 * 9 8 7 12 12 C 1.38216 * 119.98264 * 0.02562 * 11 9 8 13 13 C 1.55159 * 102.94167 * 97.22539 * 4 2 1 14 14 C 1.54909 * 101.58247 * 35.50166 * 13 4 2 15 15 N 1.47018 * 109.87942 * 238.90497 * 2 1 3 16 16 C 1.36946 * 125.65062 * 59.47960 * 15 2 1 17 17 H 1.08001 * 119.99587 * 0.02562 * 16 15 2 18 18 C 1.38815 * 119.99977 * 179.97438 * 16 15 2 19 19 N 1.31619 * 119.99960 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46773 * 90.00878 * 20 18 16 22 22 H 1.48505 * 109.47087 * 210.00459 * 20 18 16 23 23 H 1.48497 * 109.47441 * 330.00377 * 20 18 16 24 24 H 1.09001 * 109.47066 * 296.65492 * 1 2 3 25 25 H 1.08997 * 109.46792 * 56.64936 * 1 2 3 26 26 H 1.08996 * 109.47264 * 176.65201 * 1 2 3 27 27 H 1.09001 * 109.46733 * 181.09774 * 3 2 1 28 28 H 1.08997 * 109.46997 * 301.09402 * 3 2 1 29 29 H 1.08994 * 109.46980 * 61.09628 * 3 2 1 30 30 H 1.07997 * 119.99301 * 359.97438 * 7 6 4 31 31 H 1.07993 * 120.01209 * 180.26870 * 8 7 6 32 32 H 1.07989 * 120.00989 * 180.02562 * 11 9 8 33 33 H 1.08003 * 119.99181 * 180.02562 * 12 11 9 34 34 H 1.08992 * 111.00571 * 153.57477 * 13 4 2 35 35 H 1.08999 * 111.00310 * 277.38718 * 13 4 2 36 36 H 1.08991 * 110.36831 * 81.82617 * 14 13 4 37 37 H 1.08997 * 110.36694 * 204.04584 * 14 13 4 38 38 H 0.96996 * 119.99880 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2813 1.6201 6 6 0.9999 -0.8041 2.3174 7 6 -0.0621 -1.6812 2.1992 8 6 -1.0270 -1.7357 3.1873 9 6 -0.9358 -0.9044 4.2894 10 17 -2.1514 -0.9668 5.5272 11 6 0.1243 -0.0227 4.4045 12 6 1.0912 0.0272 3.4181 13 6 2.3519 -2.1695 0.6923 14 6 2.8569 -1.8498 -0.7368 15 7 2.0300 -0.7140 -1.1839 16 6 1.7699 -0.3801 -2.4863 17 1 1.1489 0.4745 -2.7109 18 6 2.3054 -1.1393 -3.5177 19 7 3.0626 -2.1805 -3.2439 20 14 1.9500 -0.6841 -5.2942 21 1 2.9896 0.2578 -5.7812 22 1 1.9622 -1.9106 -6.1314 23 1 0.6160 -0.0379 -5.3824 24 1 -0.3633 0.4610 0.9185 25 1 -0.3633 0.5650 -0.8584 26 1 -0.3633 -1.0259 -0.0600 27 1 3.1431 1.4278 -0.0197 28 1 1.6788 1.9607 -0.8800 29 1 1.7108 1.9490 0.8996 30 1 -0.1357 -2.3267 1.3365 31 1 -1.8543 -2.4240 3.0970 32 1 0.1962 0.6261 5.2647 33 1 1.9190 0.7151 3.5080 34 1 3.1270 -2.6618 1.2795 35 1 1.4453 -2.7739 0.6610 36 1 3.9091 -1.5667 -0.7129 37 1 2.7106 -2.7086 -1.3918 38 1 3.4364 -2.7112 -3.9646 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644612312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:10 Heat of formation + Delta-G solvation = 40.203906 kcal Electronic energy + Delta-G solvation = -20091.125681 eV Core-core repulsion = 17152.815303 eV Total energy + Delta-G solvation = -2938.310378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00782 -37.78791 -36.33436 -33.15770 -31.48346 -31.05744 -30.74541 -28.31480 -26.51949 -25.01374 -23.80466 -22.64106 -21.66148 -20.05526 -18.49230 -16.98590 -16.31701 -15.59557 -15.05326 -14.87312 -14.30614 -13.82567 -13.72749 -13.42941 -13.25006 -12.76712 -12.51189 -12.29625 -11.92703 -11.65281 -11.48564 -11.35135 -11.17838 -11.03219 -10.94936 -10.78116 -10.68325 -10.45501 -10.12281 -10.02593 -9.88296 -9.57827 -9.46970 -8.90608 -8.63456 -8.30052 -6.84507 -5.63674 -3.04716 1.25914 1.39428 2.15426 3.40047 3.45556 3.46961 3.73190 4.48491 4.82477 4.94436 4.99534 5.33641 5.35366 5.45693 5.47652 5.59009 5.66826 5.73065 5.90172 6.02358 6.07798 6.14598 6.27386 6.29012 6.33485 6.38682 6.48824 6.49865 6.62832 6.71008 6.77300 6.83581 6.92862 7.02452 7.19200 7.52908 7.67226 7.86876 8.37597 9.24227 9.85749 10.50328 11.40075 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.004286 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.232703 B = 6531.392974 C = 6579.260963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.191 3.809 3 C -0.148 4.148 4 C -0.060 4.060 5 H 0.080 0.920 6 C -0.040 4.040 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.047 4.047 10 Cl -0.086 7.086 11 C -0.112 4.112 12 C -0.111 4.111 13 C -0.140 4.140 14 C 0.151 3.849 15 N -0.590 5.590 16 C -0.213 4.213 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.107 0.893 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 2.055 14.669 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.102 3.898 3 C -0.207 4.207 4 C -0.079 4.079 5 H 0.099 0.901 6 C -0.041 4.041 7 C -0.115 4.115 8 C -0.131 4.131 9 C -0.073 4.073 10 Cl -0.058 7.058 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.179 4.179 14 C 0.027 3.973 15 N -0.313 5.313 16 C -0.341 4.341 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.741 3.259 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.125 0.875 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.429 1.965 14.532 15.636 hybrid contribution -0.247 0.360 -0.811 0.921 sum -5.676 2.325 13.721 15.030 Atomic orbital electron populations 1.22373 0.97507 1.01175 0.99631 1.20198 0.92259 0.90884 0.86456 1.22204 1.00789 0.97791 0.99911 1.21310 0.95406 0.98574 0.92636 0.90139 1.19976 0.95501 0.94017 0.94565 1.21230 0.93225 0.98843 0.98160 1.21016 1.00039 0.99087 0.92918 1.20843 0.92951 1.01237 0.92265 1.98344 1.55476 1.97994 1.53944 1.20942 0.93619 0.98599 0.99896 1.21016 0.98981 0.99414 0.93561 1.23197 1.00684 0.94175 0.99794 1.21938 0.92096 0.93555 0.89742 1.44564 1.56879 1.29917 0.99981 1.19004 1.25067 1.09369 0.80677 0.90627 1.24740 1.00054 0.98076 0.97833 1.69788 1.37974 1.19459 1.29971 0.86130 0.77762 0.77146 0.84826 1.21768 1.21753 1.20788 0.94093 0.93359 0.92743 0.93175 0.92915 0.94375 0.84450 0.85356 0.85480 0.85359 0.92308 0.91739 0.97047 0.87520 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 7.05 37.16 0.26 -2.45 16 2 C 0.19 3.70 0.91 -130.84 -0.12 3.58 16 3 C -0.15 -2.71 8.45 37.16 0.31 -2.39 16 4 C -0.06 -1.01 2.65 -89.94 -0.24 -1.25 16 5 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 6 C -0.04 -0.58 3.61 -104.62 -0.38 -0.96 16 7 C -0.10 -1.36 6.82 -39.59 -0.27 -1.63 16 8 C -0.11 -1.43 9.83 -39.55 -0.39 -1.81 16 9 C -0.05 -0.58 6.32 -39.50 -0.25 -0.83 16 10 Cl -0.09 -0.98 28.96 -51.86 -1.50 -2.48 16 11 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 12 C -0.11 -1.42 9.68 -39.59 -0.38 -1.80 16 13 C -0.14 -2.53 6.38 -24.58 -0.16 -2.69 16 14 C 0.15 3.52 5.89 -2.53 -0.01 3.51 16 15 N -0.59 -14.14 2.88 -155.37 -0.45 -14.59 16 16 C -0.21 -5.67 9.47 -15.05 -0.14 -5.81 16 17 H 0.08 1.98 7.80 -52.49 -0.41 1.57 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.25 10.09 55.49 0.56 -25.69 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H 0.04 0.68 6.64 -51.93 -0.34 0.33 16 25 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 26 H 0.05 1.01 6.26 -51.93 -0.33 0.69 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.14 2.00 5.32 -52.49 -0.28 1.73 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.42 8.05 -52.48 -0.42 1.00 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.14 5.90 -51.93 -0.31 0.83 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 2.81 5.88 -51.93 -0.31 2.51 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -27.91 311.86 -9.27 -37.17 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.30 Total: 0.78 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.25 Total: -16.67 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.11 Total: -40.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.91 -9.27 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644612312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.376 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds