Wall clock time and date at job start Tue Mar 31 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.99678 * 2 1 4 4 C 1.54321 * 109.88164 * 121.09618 * 2 1 3 5 5 H 1.09000 * 110.72148 * 215.76469 * 4 2 1 6 6 C 1.50699 * 110.72031 * 338.85947 * 4 2 1 7 7 C 1.38242 * 119.98456 * 75.79580 * 6 4 2 8 8 C 1.38215 * 120.01314 * 179.72591 * 7 6 4 9 9 C 1.38351 * 119.98365 * 0.54428 * 8 7 6 10 10 Cl 1.73604 * 120.01415 * 179.70455 * 9 8 7 11 11 C 1.38357 * 119.97711 * 359.72791 * 9 8 7 12 12 C 1.38216 * 119.98264 * 0.02562 * 11 9 8 13 13 C 1.55159 * 102.94167 * 97.22539 * 4 2 1 14 14 C 1.54909 * 101.58247 * 35.50166 * 13 4 2 15 15 N 1.47018 * 109.87942 * 238.90497 * 2 1 3 16 16 C 1.36946 * 125.65062 * 59.47960 * 15 2 1 17 17 H 1.08001 * 119.99587 * 0.02562 * 16 15 2 18 18 C 1.38815 * 119.99977 * 179.97438 * 16 15 2 19 19 N 1.31619 * 119.99960 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99733 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46773 * 90.00878 * 20 18 16 22 22 H 1.48505 * 109.47087 * 210.00459 * 20 18 16 23 23 H 1.48497 * 109.47441 * 330.00377 * 20 18 16 24 24 H 1.09001 * 109.47066 * 296.65492 * 1 2 3 25 25 H 1.08997 * 109.46792 * 56.64936 * 1 2 3 26 26 H 1.08996 * 109.47264 * 176.65201 * 1 2 3 27 27 H 1.09001 * 109.46733 * 181.09774 * 3 2 1 28 28 H 1.08997 * 109.46997 * 301.09402 * 3 2 1 29 29 H 1.08994 * 109.46980 * 61.09628 * 3 2 1 30 30 H 1.07997 * 119.99301 * 359.97438 * 7 6 4 31 31 H 1.07993 * 120.01209 * 180.26870 * 8 7 6 32 32 H 1.07989 * 120.00989 * 180.02562 * 11 9 8 33 33 H 1.08003 * 119.99181 * 180.02562 * 12 11 9 34 34 H 1.08992 * 111.00571 * 153.57477 * 13 4 2 35 35 H 1.08999 * 111.00310 * 277.38718 * 13 4 2 36 36 H 1.08991 * 110.36831 * 81.82617 * 14 13 4 37 37 H 1.08997 * 110.36694 * 204.04584 * 14 13 4 38 38 H 0.96996 * 119.99880 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.9639 -0.2813 1.6201 6 6 0.9999 -0.8041 2.3174 7 6 -0.0621 -1.6812 2.1992 8 6 -1.0270 -1.7357 3.1873 9 6 -0.9358 -0.9044 4.2894 10 17 -2.1514 -0.9668 5.5272 11 6 0.1243 -0.0227 4.4045 12 6 1.0912 0.0272 3.4181 13 6 2.3519 -2.1695 0.6923 14 6 2.8569 -1.8498 -0.7368 15 7 2.0300 -0.7140 -1.1839 16 6 1.7699 -0.3801 -2.4863 17 1 1.1489 0.4745 -2.7109 18 6 2.3054 -1.1393 -3.5177 19 7 3.0626 -2.1805 -3.2439 20 14 1.9500 -0.6841 -5.2942 21 1 2.9896 0.2578 -5.7812 22 1 1.9622 -1.9106 -6.1314 23 1 0.6160 -0.0379 -5.3824 24 1 -0.3633 0.4610 0.9185 25 1 -0.3633 0.5650 -0.8584 26 1 -0.3633 -1.0259 -0.0600 27 1 3.1431 1.4278 -0.0197 28 1 1.6788 1.9607 -0.8800 29 1 1.7108 1.9490 0.8996 30 1 -0.1357 -2.3267 1.3365 31 1 -1.8543 -2.4240 3.0970 32 1 0.1962 0.6261 5.2647 33 1 1.9190 0.7151 3.5080 34 1 3.1270 -2.6618 1.2795 35 1 1.4453 -2.7739 0.6610 36 1 3.9091 -1.5667 -0.7129 37 1 2.7106 -2.7086 -1.3918 38 1 3.4364 -2.7112 -3.9646 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644612312.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:09 Heat of formation + Delta-G solvation = 27.521865 kcal Electronic energy + Delta-G solvation = -20091.675616 eV Core-core repulsion = 17152.815303 eV Total energy + Delta-G solvation = -2938.860312 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24203 -39.10304 -37.31451 -34.94214 -32.98810 -32.36296 -32.02345 -29.91320 -27.98630 -26.60115 -25.51858 -23.74285 -22.86927 -21.67737 -19.99500 -18.30818 -17.92061 -16.96495 -16.48126 -16.18435 -15.78431 -15.48040 -15.00503 -14.56339 -14.36250 -14.17184 -14.03936 -13.78035 -13.46363 -13.16382 -12.89318 -12.79946 -12.75326 -12.48414 -12.39146 -12.19454 -12.11436 -11.96280 -11.65820 -11.53478 -11.43167 -11.27348 -11.14541 -10.66190 -9.88156 -9.36018 -8.80707 -7.69949 -5.11743 0.24084 0.42686 1.22275 1.47681 1.47969 1.56362 2.52508 2.72211 3.39010 3.59835 3.80480 3.89242 4.03623 4.10922 4.13938 4.37452 4.46178 4.51727 4.55192 4.62975 4.80758 4.85464 4.89014 4.92363 5.02177 5.08627 5.15742 5.19457 5.23329 5.34508 5.39856 5.48920 5.56738 5.62683 5.75383 5.78437 5.91826 5.92698 6.39364 7.19588 7.89394 8.52741 9.31701 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034296 B = 0.004286 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.232703 B = 6531.392974 C = 6579.260963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.178 3.822 3 C -0.141 4.141 4 C -0.046 4.046 5 H 0.090 0.910 6 C -0.054 4.054 7 C -0.105 4.105 8 C -0.114 4.114 9 C -0.049 4.049 10 Cl -0.076 7.076 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.153 3.847 15 N -0.607 5.607 16 C -0.214 4.214 17 H 0.076 0.924 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.968 3.032 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.272 1.272 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.078 0.922 35 H 0.068 0.932 36 H -0.015 1.015 37 H 0.071 0.929 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 3.231 16.972 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.091 3.909 3 C -0.200 4.200 4 C -0.065 4.065 5 H 0.108 0.892 6 C -0.054 4.054 7 C -0.123 4.123 8 C -0.133 4.133 9 C -0.076 4.076 10 Cl -0.047 7.047 11 C -0.126 4.126 12 C -0.124 4.124 13 C -0.165 4.165 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.343 4.343 17 H 0.093 0.907 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.798 3.202 21 H -0.218 1.218 22 H -0.223 1.223 23 H -0.197 1.197 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.003 0.997 37 H 0.089 0.911 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.507 3.165 16.866 18.352 hybrid contribution 0.028 0.014 -1.424 1.424 sum -6.479 3.180 15.442 17.045 Atomic orbital electron populations 1.22225 0.96558 1.00644 0.99911 1.20516 0.92885 0.91485 0.86042 1.22115 1.00063 0.97059 1.00793 1.21140 0.96563 0.96637 0.92148 0.89190 1.19758 0.95224 0.95627 0.94813 1.21150 0.93795 0.99002 0.98324 1.21128 1.00044 0.99401 0.92707 1.21008 0.93314 1.00971 0.92281 1.98354 1.55057 1.97941 1.53352 1.21207 0.92809 0.98357 1.00269 1.21199 0.99589 0.98936 0.92699 1.23028 1.01192 0.95730 0.96587 1.21692 0.90941 0.92204 0.92351 1.44804 1.56931 1.30783 1.00557 1.19275 1.24018 1.08779 0.82271 0.90650 1.25460 1.00805 0.98550 1.01269 1.70040 1.39282 1.20480 1.30263 0.85211 0.77813 0.76455 0.80718 1.21836 1.22316 1.19729 0.91789 0.95135 0.93488 0.94139 0.94593 0.90972 0.85671 0.84173 0.83127 0.83376 0.90325 0.91368 0.99748 0.91085 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 7.05 71.98 0.51 -4.28 16 2 C 0.18 6.76 0.91 3.96 0.00 6.76 16 3 C -0.14 -4.97 8.45 71.98 0.61 -4.36 16 4 C -0.05 -1.46 2.65 -10.35 -0.03 -1.48 16 5 H 0.09 2.68 7.76 -2.39 -0.02 2.66 16 6 C -0.05 -1.41 3.61 -19.86 -0.07 -1.48 16 7 C -0.10 -2.73 6.82 22.27 0.15 -2.58 16 8 C -0.11 -2.61 9.83 22.29 0.22 -2.39 16 9 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 10 Cl -0.08 -1.48 28.96 -2.72 -0.08 -1.56 16 11 C -0.11 -2.13 9.83 22.29 0.22 -1.91 16 12 C -0.11 -2.27 9.68 22.26 0.22 -2.06 16 13 C -0.13 -4.54 6.38 31.99 0.20 -4.34 16 14 C 0.15 7.36 5.89 86.85 0.51 7.87 16 15 N -0.61 -29.62 2.88 -645.46 -1.86 -31.48 16 16 C -0.21 -11.64 9.47 84.03 0.80 -10.84 16 17 H 0.08 4.00 7.80 -2.91 -0.02 3.98 16 18 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 19 N -0.95 -56.18 10.09 21.65 0.22 -55.96 16 20 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H 0.06 1.96 6.64 -2.39 -0.02 1.94 16 25 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 26 H 0.05 1.72 6.26 -2.39 -0.01 1.71 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 1.35 8.04 -2.39 -0.02 1.33 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.13 3.55 5.32 -2.91 -0.02 3.53 16 31 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 2.26 8.06 -2.92 -0.02 2.24 16 33 H 0.15 2.58 8.05 -2.91 -0.02 2.55 16 34 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.39 5.90 -2.39 -0.01 2.37 16 36 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.07 3.93 5.88 -2.39 -0.01 3.92 16 38 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -61.28 311.86 5.30 -55.98 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.05 Total: 10.60 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.94 Total: -25.41 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -1.64 Total: -87.44 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -61.28 5.30 -55.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644612312.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.498 kcal (2) G-P(sol) polarization free energy of solvation -61.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds