Wall clock time and date at job start Tue Mar 31 2020 00:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.87006 * 2 1 4 4 C 1.54317 * 109.88207 * 121.01420 * 2 1 3 5 5 H 1.08996 * 110.72352 * 23.25282 * 4 2 1 6 6 C 1.50698 * 110.72076 * 259.97411 * 4 2 1 7 7 C 1.38243 * 119.98810 * 284.79348 * 6 4 2 8 8 C 1.38219 * 120.01398 * 179.72488 * 7 6 4 9 9 C 1.38351 * 119.98323 * 0.54815 * 8 7 6 10 10 Cl 1.73603 * 120.00931 * 179.70146 * 9 8 7 11 11 C 1.38352 * 119.97725 * 359.72812 * 9 8 7 12 12 C 1.38216 * 119.98518 * 359.97438 * 11 9 8 13 13 C 1.55157 * 102.94100 * 141.61185 * 4 2 1 14 14 C 1.54909 * 101.58449 * 324.49789 * 13 4 2 15 15 N 1.47017 * 109.88322 * 238.82537 * 2 1 3 16 16 C 1.36943 * 125.65001 * 61.59448 * 15 2 1 17 17 H 1.07997 * 119.99847 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99957 * 180.02562 * 16 15 2 19 19 N 1.31621 * 120.00098 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99807 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47088 * 89.99753 * 20 18 16 22 22 H 1.48500 * 109.46826 * 209.99358 * 20 18 16 23 23 H 1.48496 * 109.47104 * 329.99733 * 20 18 16 24 24 H 1.09001 * 109.47416 * 298.98631 * 1 2 3 25 25 H 1.09006 * 109.47647 * 58.98567 * 1 2 3 26 26 H 1.09000 * 109.47115 * 178.98133 * 1 2 3 27 27 H 1.09006 * 109.47144 * 183.64890 * 3 2 1 28 28 H 1.09001 * 109.47034 * 303.64353 * 3 2 1 29 29 H 1.08998 * 109.47114 * 63.64616 * 3 2 1 30 30 H 1.08002 * 119.99309 * 359.97438 * 7 6 4 31 31 H 1.08005 * 120.00607 * 180.27130 * 8 7 6 32 32 H 1.07995 * 120.01075 * 180.02562 * 11 9 8 33 33 H 1.07995 * 119.99493 * 179.97438 * 12 11 9 34 34 H 1.09004 * 111.00709 * 82.57225 * 13 4 2 35 35 H 1.08998 * 111.00651 * 206.42100 * 13 4 2 36 36 H 1.08995 * 110.36821 * 155.84573 * 14 13 4 37 37 H 1.08994 * 110.36421 * 278.17434 * 14 13 4 38 38 H 0.97001 * 119.99891 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0548 -0.7477 1.2437 5 1 1.3051 -1.4437 1.6202 6 6 2.4669 0.2265 2.3171 7 6 3.6483 0.9333 2.1921 8 6 4.0240 1.8312 3.1735 9 6 3.2230 2.0140 4.2866 10 17 3.6980 3.1359 5.5234 11 6 2.0435 1.3021 4.4139 12 6 1.6659 0.4091 3.4289 13 6 3.2876 -1.5132 0.6945 14 6 2.8145 -1.8804 -0.7342 15 7 2.0300 -0.7157 -1.1829 16 6 1.8036 -0.3599 -2.4858 17 1 1.2117 0.5147 -2.7117 18 6 2.3341 -1.1241 -3.5161 19 7 3.0551 -2.1903 -3.2407 20 14 2.0247 -0.6392 -5.2933 21 1 3.1009 0.2759 -5.7513 22 1 2.0148 -1.8564 -6.1439 23 1 0.7127 0.0484 -5.3976 24 1 -0.3634 0.4980 0.8989 25 1 -0.3634 0.5295 -0.8808 26 1 -0.3633 -1.0275 -0.0183 27 1 3.1381 1.4321 -0.0654 28 1 1.6380 1.9741 -0.8555 29 1 1.7445 1.9357 0.9208 30 1 4.2759 0.7869 1.3254 31 1 4.9449 2.3866 3.0735 32 1 1.4176 1.4447 5.2824 33 1 0.7454 -0.1470 3.5284 34 1 4.1654 -0.8678 0.6615 35 1 3.4852 -2.4091 1.2829 36 1 3.6716 -2.0357 -1.3894 37 1 2.1887 -2.7724 -0.7089 38 1 3.4261 -2.7240 -3.9607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644612498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:12 Heat of formation + Delta-G solvation = 40.226027 kcal Electronic energy + Delta-G solvation = -20090.596528 eV Core-core repulsion = 17152.287109 eV Total energy + Delta-G solvation = -2938.309419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00902 -37.78845 -36.33445 -33.15935 -31.48306 -31.05885 -30.74982 -28.31665 -26.51469 -25.01413 -23.80298 -22.63665 -21.66179 -20.05875 -18.49361 -16.98382 -16.31584 -15.60218 -15.05518 -14.86847 -14.30324 -13.82576 -13.73167 -13.42879 -13.25216 -12.76504 -12.51096 -12.29511 -11.92800 -11.65357 -11.48495 -11.35251 -11.18412 -11.02953 -10.95242 -10.77383 -10.68453 -10.44979 -10.12594 -10.02840 -9.88384 -9.57321 -9.47467 -8.90409 -8.63545 -8.29957 -6.84527 -5.63689 -3.04792 1.25910 1.39430 2.15427 3.39995 3.45540 3.46982 3.73164 4.48459 4.82502 4.94414 4.99536 5.33409 5.35595 5.45646 5.47534 5.58997 5.66961 5.72991 5.90163 6.02347 6.08024 6.14387 6.27462 6.29004 6.33538 6.38504 6.48792 6.49892 6.62809 6.70955 6.77189 6.83564 6.92859 7.02435 7.19063 7.52847 7.67271 7.86755 8.37652 9.24175 9.85718 10.50251 11.40026 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.004286 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.568416 B = 6531.101886 C = 6582.799643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.191 3.809 3 C -0.148 4.148 4 C -0.060 4.060 5 H 0.080 0.920 6 C -0.040 4.040 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.047 4.047 10 Cl -0.086 7.086 11 C -0.112 4.112 12 C -0.112 4.112 13 C -0.140 4.140 14 C 0.151 3.849 15 N -0.590 5.590 16 C -0.213 4.213 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.283 1.283 24 H 0.037 0.963 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.012 0.988 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 5.744 14.663 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.102 3.898 3 C -0.207 4.207 4 C -0.079 4.079 5 H 0.099 0.901 6 C -0.040 4.040 7 C -0.114 4.114 8 C -0.131 4.131 9 C -0.073 4.073 10 Cl -0.058 7.058 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.179 4.179 14 C 0.027 3.973 15 N -0.313 5.313 16 C -0.341 4.341 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.741 3.259 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.156 0.844 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.030 0.970 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.032 5.751 14.525 15.623 hybrid contribution -0.239 0.368 -0.812 0.923 sum -0.270 6.119 13.713 15.019 Atomic orbital electron populations 1.22208 0.97617 1.00971 0.99910 1.20191 0.91905 0.91232 0.86464 1.22383 1.01085 0.97624 0.99631 1.21305 0.98835 0.95130 0.92661 0.90137 1.19971 0.93597 0.95957 0.94524 1.21233 0.96795 0.95140 0.98270 1.21019 0.99752 0.99417 0.92880 1.20841 0.97440 0.96861 0.92150 1.98344 1.91988 1.61419 1.54007 1.20941 0.95391 0.96801 0.99929 1.21016 0.99933 0.98571 0.93461 1.23201 0.96127 0.98733 0.99794 1.21946 0.97266 0.88388 0.89743 1.44562 1.59131 1.27655 0.99980 1.19003 1.26517 1.07924 0.80668 0.90626 1.24740 1.00626 0.97503 0.97835 1.69789 1.39451 1.17965 1.29990 0.86130 0.77724 0.77189 0.84817 1.21710 1.21760 1.20841 0.94381 0.92917 0.93186 0.92735 0.93373 0.94057 0.84447 0.85352 0.85481 0.85362 0.91750 0.92303 0.87504 0.97034 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.44 37.16 0.31 -2.40 16 2 C 0.19 3.71 0.91 -130.85 -0.12 3.59 16 3 C -0.15 -2.72 7.04 37.16 0.26 -2.46 16 4 C -0.06 -1.01 2.65 -89.94 -0.24 -1.25 16 5 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 6 C -0.04 -0.58 3.62 -104.62 -0.38 -0.96 16 7 C -0.10 -1.36 6.79 -39.59 -0.27 -1.62 16 8 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 9 C -0.05 -0.58 6.32 -39.50 -0.25 -0.83 16 10 Cl -0.09 -0.98 28.96 -51.86 -1.50 -2.48 16 11 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 12 C -0.11 -1.42 9.69 -39.59 -0.38 -1.80 16 13 C -0.14 -2.54 6.38 -24.58 -0.16 -2.69 16 14 C 0.15 3.52 5.89 -2.53 -0.01 3.50 16 15 N -0.59 -14.14 2.88 -155.38 -0.45 -14.59 16 16 C -0.21 -5.67 9.49 -15.06 -0.14 -5.81 16 17 H 0.08 1.98 7.82 -52.49 -0.41 1.57 16 18 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.25 10.09 55.49 0.56 -25.69 16 20 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 1.01 6.25 -51.93 -0.32 0.69 16 28 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.04 0.68 6.60 -51.93 -0.34 0.34 16 30 H 0.14 2.01 5.31 -52.49 -0.28 1.73 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.13 1.42 8.05 -52.49 -0.42 1.00 16 34 H 0.06 1.14 5.92 -51.93 -0.31 0.83 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 2.82 5.87 -51.93 -0.31 2.51 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 311.87 15.07 4.70 4.70 Total: -1.00 -27.90 311.87 -9.27 -37.17 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.30 Total: 0.79 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.25 Total: -16.69 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.11 Total: -40.28 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.90 -9.27 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644612498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.393 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds