Wall clock time and date at job start Tue Mar 31 2020 00:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.87006 * 2 1 4 4 C 1.54317 * 109.88207 * 121.01420 * 2 1 3 5 5 H 1.08996 * 110.72352 * 23.25282 * 4 2 1 6 6 C 1.50698 * 110.72076 * 259.97411 * 4 2 1 7 7 C 1.38243 * 119.98810 * 284.79348 * 6 4 2 8 8 C 1.38219 * 120.01398 * 179.72488 * 7 6 4 9 9 C 1.38351 * 119.98323 * 0.54815 * 8 7 6 10 10 Cl 1.73603 * 120.00931 * 179.70146 * 9 8 7 11 11 C 1.38352 * 119.97725 * 359.72812 * 9 8 7 12 12 C 1.38216 * 119.98518 * 359.97438 * 11 9 8 13 13 C 1.55157 * 102.94100 * 141.61185 * 4 2 1 14 14 C 1.54909 * 101.58449 * 324.49789 * 13 4 2 15 15 N 1.47017 * 109.88322 * 238.82537 * 2 1 3 16 16 C 1.36943 * 125.65001 * 61.59448 * 15 2 1 17 17 H 1.07997 * 119.99847 * 359.97438 * 16 15 2 18 18 C 1.38811 * 119.99957 * 180.02562 * 16 15 2 19 19 N 1.31621 * 120.00098 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99807 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47088 * 89.99753 * 20 18 16 22 22 H 1.48500 * 109.46826 * 209.99358 * 20 18 16 23 23 H 1.48496 * 109.47104 * 329.99733 * 20 18 16 24 24 H 1.09001 * 109.47416 * 298.98631 * 1 2 3 25 25 H 1.09006 * 109.47647 * 58.98567 * 1 2 3 26 26 H 1.09000 * 109.47115 * 178.98133 * 1 2 3 27 27 H 1.09006 * 109.47144 * 183.64890 * 3 2 1 28 28 H 1.09001 * 109.47034 * 303.64353 * 3 2 1 29 29 H 1.08998 * 109.47114 * 63.64616 * 3 2 1 30 30 H 1.08002 * 119.99309 * 359.97438 * 7 6 4 31 31 H 1.08005 * 120.00607 * 180.27130 * 8 7 6 32 32 H 1.07995 * 120.01075 * 180.02562 * 11 9 8 33 33 H 1.07995 * 119.99493 * 179.97438 * 12 11 9 34 34 H 1.09004 * 111.00709 * 82.57225 * 13 4 2 35 35 H 1.08998 * 111.00651 * 206.42100 * 13 4 2 36 36 H 1.08995 * 110.36821 * 155.84573 * 14 13 4 37 37 H 1.08994 * 110.36421 * 278.17434 * 14 13 4 38 38 H 0.97001 * 119.99891 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 6 2.0548 -0.7477 1.2437 5 1 1.3051 -1.4437 1.6202 6 6 2.4669 0.2265 2.3171 7 6 3.6483 0.9333 2.1921 8 6 4.0240 1.8312 3.1735 9 6 3.2230 2.0140 4.2866 10 17 3.6980 3.1359 5.5234 11 6 2.0435 1.3021 4.4139 12 6 1.6659 0.4091 3.4289 13 6 3.2876 -1.5132 0.6945 14 6 2.8145 -1.8804 -0.7342 15 7 2.0300 -0.7157 -1.1829 16 6 1.8036 -0.3599 -2.4858 17 1 1.2117 0.5147 -2.7117 18 6 2.3341 -1.1241 -3.5161 19 7 3.0551 -2.1903 -3.2407 20 14 2.0247 -0.6392 -5.2933 21 1 3.1009 0.2759 -5.7513 22 1 2.0148 -1.8564 -6.1439 23 1 0.7127 0.0484 -5.3976 24 1 -0.3634 0.4980 0.8989 25 1 -0.3634 0.5295 -0.8808 26 1 -0.3633 -1.0275 -0.0183 27 1 3.1381 1.4321 -0.0654 28 1 1.6380 1.9741 -0.8555 29 1 1.7445 1.9357 0.9208 30 1 4.2759 0.7869 1.3254 31 1 4.9449 2.3866 3.0735 32 1 1.4176 1.4447 5.2824 33 1 0.7454 -0.1470 3.5284 34 1 4.1654 -0.8678 0.6615 35 1 3.4852 -2.4091 1.2829 36 1 3.6716 -2.0357 -1.3894 37 1 2.1887 -2.7724 -0.7089 38 1 3.4261 -2.7240 -3.9607 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001644612498.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:11 Heat of formation + Delta-G solvation = 27.550439 kcal Electronic energy + Delta-G solvation = -20091.146182 eV Core-core repulsion = 17152.287109 eV Total energy + Delta-G solvation = -2938.859073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24348 -39.10356 -37.31469 -34.94381 -32.98913 -32.36356 -32.02778 -29.91531 -27.98072 -26.60176 -25.51848 -23.73601 -22.87059 -21.68140 -19.99665 -18.30823 -17.91769 -16.97085 -16.48140 -16.18489 -15.77861 -15.48055 -15.01010 -14.56682 -14.36215 -14.17030 -14.03760 -13.77862 -13.46278 -13.16591 -12.89423 -12.81900 -12.73869 -12.46640 -12.40137 -12.19262 -12.11166 -11.97157 -11.65609 -11.53475 -11.43385 -11.27804 -11.14198 -10.66159 -9.88010 -9.35967 -8.80723 -7.69962 -5.11815 0.24055 0.42674 1.22264 1.47667 1.48027 1.56310 2.52479 2.72159 3.38997 3.59720 3.80497 3.89376 4.03560 4.10838 4.13816 4.37513 4.46161 4.51738 4.55324 4.62878 4.80642 4.85400 4.88942 4.92276 5.02147 5.08442 5.15775 5.19444 5.23319 5.34494 5.39751 5.48850 5.56690 5.62688 5.75334 5.78445 5.91779 5.92573 6.39405 7.19541 7.89375 8.52678 9.31644 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.004286 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.568416 B = 6531.101886 C = 6582.799643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.178 3.822 3 C -0.135 4.135 4 C -0.046 4.046 5 H 0.090 0.910 6 C -0.054 4.054 7 C -0.104 4.104 8 C -0.114 4.114 9 C -0.049 4.049 10 Cl -0.076 7.076 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.127 4.127 14 C 0.153 3.847 15 N -0.607 5.607 16 C -0.214 4.214 17 H 0.076 0.924 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.968 3.032 21 H -0.289 1.289 22 H -0.297 1.297 23 H -0.273 1.273 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.071 0.929 37 H -0.015 1.015 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 7.116 16.970 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.091 3.909 3 C -0.194 4.194 4 C -0.065 4.065 5 H 0.108 0.892 6 C -0.054 4.054 7 C -0.122 4.122 8 C -0.133 4.133 9 C -0.076 4.076 10 Cl -0.047 7.047 11 C -0.126 4.126 12 C -0.124 4.124 13 C -0.165 4.165 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.343 4.343 17 H 0.093 0.907 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.798 3.202 21 H -0.216 1.216 22 H -0.224 1.224 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.143 0.857 31 H 0.158 0.842 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.003 0.997 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.811 7.153 16.863 18.336 hybrid contribution 0.001 -0.001 -1.427 1.427 sum -0.810 7.152 15.437 17.032 Atomic orbital electron populations 1.22118 0.96606 1.00541 1.00765 1.20508 0.92660 0.91704 0.86059 1.22237 1.00424 0.96780 0.99941 1.21135 0.97874 0.95307 0.92167 0.89187 1.19753 0.94511 0.96380 0.94775 1.21151 0.96818 0.95856 0.98420 1.21130 1.00345 0.99132 0.92689 1.21007 0.97541 0.96853 0.92166 1.98354 1.91936 1.60998 1.53414 1.21207 0.95244 0.95861 1.00332 1.21201 1.00195 0.98437 0.92583 1.23031 0.96984 0.99924 0.96597 1.21699 0.95447 0.87708 0.92346 1.44801 1.59536 1.28175 1.00552 1.19272 1.25401 1.07410 0.82265 0.90656 1.25461 1.01357 0.97990 1.01275 1.70042 1.40749 1.18989 1.30283 0.85211 0.77807 0.76480 0.80696 1.21596 1.22414 1.19865 0.90991 0.94627 0.94142 0.93485 0.95108 0.91758 0.85688 0.84178 0.83121 0.83368 0.91401 0.90313 0.91073 0.99721 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.44 71.98 0.61 -4.37 16 2 C 0.18 6.76 0.91 3.95 0.00 6.76 16 3 C -0.14 -4.80 7.04 71.98 0.51 -4.29 16 4 C -0.05 -1.45 2.65 -10.35 -0.03 -1.48 16 5 H 0.09 2.68 7.76 -2.39 -0.02 2.66 16 6 C -0.05 -1.41 3.62 -19.86 -0.07 -1.48 16 7 C -0.10 -2.72 6.79 22.27 0.15 -2.57 16 8 C -0.11 -2.62 9.83 22.29 0.22 -2.40 16 9 C -0.05 -1.06 6.32 22.32 0.14 -0.92 16 10 Cl -0.08 -1.48 28.96 -2.72 -0.08 -1.56 16 11 C -0.11 -2.13 9.83 22.29 0.22 -1.91 16 12 C -0.11 -2.27 9.69 22.27 0.22 -2.06 16 13 C -0.13 -4.54 6.38 31.99 0.20 -4.34 16 14 C 0.15 7.35 5.89 86.85 0.51 7.86 16 15 N -0.61 -29.62 2.88 -645.51 -1.86 -31.48 16 16 C -0.21 -11.64 9.49 84.03 0.80 -10.84 16 17 H 0.08 4.00 7.82 -2.91 -0.02 3.98 16 18 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 19 N -0.95 -56.17 10.09 21.65 0.22 -55.95 16 20 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 25 H 0.03 1.34 8.04 -2.38 -0.02 1.33 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.72 6.25 -2.38 -0.01 1.71 16 28 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 29 H 0.06 1.97 6.60 -2.39 -0.02 1.95 16 30 H 0.13 3.55 5.31 -2.91 -0.02 3.53 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.15 2.57 8.05 -2.91 -0.02 2.55 16 34 H 0.07 2.38 5.92 -2.39 -0.01 2.36 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 36 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 37 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -61.26 311.87 5.30 -55.96 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.05 Total: 10.64 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 3.94 Total: -25.44 kcal Atomic # 7 Polarization: -85.79 SS G_CDS: -1.64 Total: -87.43 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -61.26 5.30 -55.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644612498.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.513 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds