Wall clock time and date at job start Tue Mar 31 2020 00:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34652 * 119.16597 * 2 1 4 4 C 1.42138 * 119.20524 * 180.29409 * 3 2 1 5 5 N 1.32791 * 121.06496 * 179.69461 * 4 3 2 6 6 C 1.36424 * 120.00082 * 182.92633 * 5 4 3 7 7 C 1.40271 * 120.05238 * 87.17773 * 6 5 4 8 8 C 1.38251 * 120.31669 * 179.97438 * 7 6 5 9 9 C 1.37802 * 120.42879 * 0.02562 * 8 7 6 10 10 C 1.40848 * 120.09357 * 359.97438 * 9 8 7 11 11 C 1.41448 * 120.16018 * 180.27418 * 10 9 8 12 12 H 1.07994 * 120.00215 * 333.10506 * 11 10 9 13 13 C 1.39885 * 119.99806 * 153.10051 * 11 10 9 14 14 N 1.30863 * 120.00134 * 342.17029 * 13 11 10 15 15 Si 1.86796 * 119.99866 * 162.17335 * 13 11 10 16 16 H 1.48494 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47134 * 119.99903 * 15 13 11 18 18 H 1.48497 * 109.47241 * 239.99836 * 15 13 11 19 19 C 1.39233 * 120.04531 * 267.16515 * 6 5 4 20 20 C 1.47507 * 117.86726 * 359.42365 * 4 3 2 21 21 C 1.43202 * 120.83372 * 180.29177 * 20 4 3 22 22 N 4.89115 * 134.43210 * 359.97438 * 3 1 2 23 23 C 1.36775 * 118.33285 * 0.27443 * 20 4 3 24 24 N 1.34720 * 120.52777 * 359.97438 * 23 20 4 25 25 H 0.97000 * 118.80166 * 180.02562 * 24 23 20 26 26 H 1.08997 * 109.47546 * 270.31587 * 1 2 3 27 27 H 1.09005 * 109.46935 * 30.32041 * 1 2 3 28 28 H 1.09003 * 109.47145 * 150.31642 * 1 2 3 29 29 H 1.07999 * 120.39602 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.83628 * 359.96145 * 7 6 5 31 31 H 1.07998 * 119.78177 * 180.02562 * 8 7 6 32 32 H 1.08003 * 119.94928 * 180.02562 * 9 8 7 33 33 H 0.96998 * 119.99875 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.21212 * 0.03473 * 19 6 5 35 35 H 1.08003 * 119.73831 * 180.02562 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1633 1.1758 0.0000 4 6 3.5846 1.1768 -0.0064 5 7 4.2690 2.3147 -0.0127 6 6 5.6314 2.2909 -0.0790 7 6 6.2734 2.2474 -1.3254 8 6 7.6537 2.2237 -1.3991 9 6 8.4143 2.2420 -0.2501 10 6 7.7882 2.2856 1.0108 11 6 8.5676 2.3103 2.1909 12 1 9.5561 1.8754 2.1943 13 6 8.0580 2.8981 3.3534 14 7 7.0410 3.7183 3.2803 15 14 8.8294 2.5122 5.0104 16 1 9.9561 1.5633 4.8229 17 1 9.3347 3.7660 5.6252 18 1 7.8103 1.9003 5.9004 19 6 6.3868 2.3101 1.0905 20 6 4.2750 -0.1267 0.0004 21 6 5.7052 -0.1998 0.0008 22 7 6.8396 -0.2577 0.0016 23 6 3.5150 -1.2638 0.0066 24 7 2.1699 -1.1879 0.0071 25 1 1.6554 -2.0102 0.0119 26 1 -0.3634 0.0057 1.0276 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8928 -0.5089 29 1 1.6161 2.1069 0.0004 30 1 5.6865 2.2322 -2.2319 31 1 8.1390 2.1906 -2.3633 32 1 9.4922 2.2236 -0.3167 33 1 6.6874 4.1256 4.0865 34 1 5.8977 2.3432 2.0528 35 1 3.9969 -2.2303 0.0121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651072902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:01 Heat of formation + Delta-G solvation = 109.520108 kcal Electronic energy + Delta-G solvation = -20658.059522 eV Core-core repulsion = 17621.647426 eV Total energy + Delta-G solvation = -3036.412096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43758 -38.05599 -35.53555 -34.88243 -33.32724 -33.10148 -30.98702 -29.36570 -28.46226 -26.97131 -25.04577 -23.60202 -22.30296 -20.73726 -19.84771 -19.42319 -17.37462 -16.79644 -16.12813 -15.69956 -14.91787 -14.85719 -14.52533 -14.15226 -13.54379 -13.22269 -13.07838 -12.89862 -12.78520 -12.42252 -12.25438 -12.13755 -12.00696 -11.57591 -11.39216 -11.08224 -10.87466 -10.76627 -10.45753 -10.32016 -9.78227 -9.42717 -9.18142 -9.15823 -8.76568 -7.18775 -6.92666 -6.73626 -6.48124 -4.18861 1.24571 1.53845 2.82494 2.91011 3.09953 3.15379 3.21987 3.35220 3.56510 3.71645 4.06253 4.39727 4.45453 4.55228 4.74257 4.78232 4.92222 5.21270 5.34146 5.52522 5.57357 5.71416 5.89005 6.06304 6.31589 6.42795 6.63644 6.77881 6.97399 6.99818 7.16886 7.24385 7.36128 7.55522 7.71499 8.04039 8.20793 8.21189 8.39022 8.56086 8.68827 9.03930 9.08879 9.22870 10.37445 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.005681 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.714406 B = 4927.171845 C = 5476.845654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.118 3.882 3 C -0.159 4.159 4 C 0.238 3.762 5 N -0.493 5.493 6 C 0.095 3.905 7 C -0.248 4.248 8 C -0.080 4.080 9 C -0.212 4.212 10 C 0.133 3.867 11 C -0.466 4.466 12 H 0.075 0.925 13 C 0.076 3.924 14 N -0.795 5.795 15 Si 0.902 3.098 16 H -0.261 1.261 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.165 4.165 20 C -0.135 4.135 21 C 0.235 3.765 22 N -0.375 5.375 23 C 0.169 3.831 24 N -0.601 5.601 25 H 0.415 0.585 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.277 0.723 34 H 0.112 0.888 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.138 -11.687 -3.699 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.011 3.989 3 C -0.184 4.184 4 C 0.060 3.940 5 N -0.201 5.201 6 C -0.004 4.004 7 C -0.269 4.269 8 C -0.099 4.099 9 C -0.233 4.233 10 C 0.130 3.870 11 C -0.496 4.496 12 H 0.094 0.906 13 C -0.141 4.141 14 N -0.421 5.421 15 Si 0.727 3.273 16 H -0.185 1.185 17 H -0.201 1.201 18 H -0.199 1.199 19 C -0.187 4.187 20 C -0.149 4.149 21 C -0.079 4.079 22 N -0.051 5.051 23 C 0.035 3.965 24 N -0.208 5.208 25 H 0.250 0.750 26 H 0.101 0.899 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.540 -10.506 -3.525 18.282 hybrid contribution 0.175 -0.793 0.802 1.141 sum -14.365 -11.299 -2.723 18.478 Atomic orbital electron populations 1.20922 0.88399 1.04179 1.03718 1.19925 0.94173 0.85432 0.99386 1.20289 0.91866 0.96817 1.09440 1.20274 0.92672 0.86775 0.94254 1.69254 1.08160 1.24187 1.18528 1.18450 0.87271 1.00498 0.94134 1.20342 0.93974 1.18490 0.94114 1.20251 0.93291 1.00004 0.96340 1.20934 0.97164 1.12594 0.92559 1.17312 0.91408 0.86525 0.91796 1.19532 1.02178 1.33699 0.94207 0.90645 1.25869 0.94391 0.92891 1.00913 1.69892 1.21335 1.20397 1.30438 0.86371 0.80048 0.79194 0.81734 1.18482 1.20053 1.19902 1.21288 0.93645 1.08676 0.95062 1.17172 0.86346 0.94239 1.17179 1.24557 0.91769 0.95926 0.95695 1.81283 1.10879 1.05946 1.06947 1.21347 0.82641 0.99029 0.93469 1.40474 1.05100 1.08349 1.66925 0.74991 0.89938 0.89254 0.91093 0.83425 0.89949 0.89779 0.89469 0.91201 0.86969 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.03 36.01 0.36 -0.14 16 2 C 0.12 1.01 6.79 -82.00 -0.56 0.46 16 3 C -0.16 -2.11 9.59 -39.36 -0.38 -2.48 16 4 C 0.24 4.45 6.80 -82.18 -0.56 3.90 16 5 N -0.49 -11.79 10.40 -7.25 -0.08 -11.86 16 6 C 0.09 2.54 3.53 -84.69 -0.30 2.24 16 7 C -0.25 -6.44 8.46 -38.81 -0.33 -6.77 16 8 C -0.08 -2.07 9.27 -39.74 -0.37 -2.44 16 9 C -0.21 -5.90 9.04 -38.75 -0.35 -6.25 16 10 C 0.13 3.92 4.61 -106.88 -0.49 3.42 16 11 C -0.47 -13.68 9.04 -37.74 -0.34 -14.02 16 12 H 0.08 2.15 7.91 -52.49 -0.41 1.74 16 13 C 0.08 2.11 5.12 -17.35 -0.09 2.02 16 14 N -0.79 -22.76 11.11 55.54 0.62 -22.14 16 15 Si 0.90 20.39 29.59 -169.99 -5.03 15.36 16 16 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 19 C -0.17 -4.81 6.94 -38.40 -0.27 -5.08 16 20 C -0.13 -2.29 5.88 -104.72 -0.62 -2.90 16 21 C 0.24 5.02 10.83 -22.48 -0.24 4.77 16 22 N -0.37 -9.01 14.43 41.83 0.60 -8.41 16 23 C 0.17 1.74 10.88 -16.81 -0.18 1.56 16 24 N -0.60 -4.26 5.19 -9.15 -0.05 -4.31 16 25 H 0.41 1.11 8.71 -40.82 -0.36 0.76 16 26 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.37 8.06 -51.93 -0.42 -0.05 16 28 H 0.07 0.16 8.12 -51.93 -0.42 -0.26 16 29 H 0.15 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.08 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.08 1.94 8.06 -52.49 -0.42 1.51 16 32 H 0.09 2.31 8.06 -52.48 -0.42 1.89 16 33 H 0.28 7.22 8.30 -40.82 -0.34 6.88 16 34 H 0.11 3.48 6.33 -52.49 -0.33 3.15 16 35 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -38.38 304.72 -7.66 -46.04 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.61 Total: 2.45 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -4.71 Total: -21.72 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 1.10 Total: -46.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -38.38 -7.66 -46.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651072902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.564 kcal (2) G-P(sol) polarization free energy of solvation -38.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds