Wall clock time and date at job start Tue Mar 31 2020 00:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34652 * 119.16597 * 2 1 4 4 C 1.42138 * 119.20524 * 180.29409 * 3 2 1 5 5 N 1.32791 * 121.06496 * 179.69461 * 4 3 2 6 6 C 1.36424 * 120.00082 * 182.92633 * 5 4 3 7 7 C 1.40271 * 120.05238 * 87.17773 * 6 5 4 8 8 C 1.38251 * 120.31669 * 179.97438 * 7 6 5 9 9 C 1.37802 * 120.42879 * 0.02562 * 8 7 6 10 10 C 1.40848 * 120.09357 * 359.97438 * 9 8 7 11 11 C 1.41448 * 120.16018 * 180.27418 * 10 9 8 12 12 H 1.07994 * 120.00215 * 333.10506 * 11 10 9 13 13 C 1.39885 * 119.99806 * 153.10051 * 11 10 9 14 14 N 1.30863 * 120.00134 * 342.17029 * 13 11 10 15 15 Si 1.86796 * 119.99866 * 162.17335 * 13 11 10 16 16 H 1.48494 * 109.47285 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47134 * 119.99903 * 15 13 11 18 18 H 1.48497 * 109.47241 * 239.99836 * 15 13 11 19 19 C 1.39233 * 120.04531 * 267.16515 * 6 5 4 20 20 C 1.47507 * 117.86726 * 359.42365 * 4 3 2 21 21 C 1.43202 * 120.83372 * 180.29177 * 20 4 3 22 22 N 4.89115 * 134.43210 * 359.97438 * 3 1 2 23 23 C 1.36775 * 118.33285 * 0.27443 * 20 4 3 24 24 N 1.34720 * 120.52777 * 359.97438 * 23 20 4 25 25 H 0.97000 * 118.80166 * 180.02562 * 24 23 20 26 26 H 1.08997 * 109.47546 * 270.31587 * 1 2 3 27 27 H 1.09005 * 109.46935 * 30.32041 * 1 2 3 28 28 H 1.09003 * 109.47145 * 150.31642 * 1 2 3 29 29 H 1.07999 * 120.39602 * 0.02562 * 3 2 1 30 30 H 1.07996 * 119.83628 * 359.96145 * 7 6 5 31 31 H 1.07998 * 119.78177 * 180.02562 * 8 7 6 32 32 H 1.08003 * 119.94928 * 180.02562 * 9 8 7 33 33 H 0.96998 * 119.99875 * 179.97438 * 14 13 11 34 34 H 1.07999 * 120.21212 * 0.03473 * 19 6 5 35 35 H 1.08003 * 119.73831 * 180.02562 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1633 1.1758 0.0000 4 6 3.5846 1.1768 -0.0064 5 7 4.2690 2.3147 -0.0127 6 6 5.6314 2.2909 -0.0790 7 6 6.2734 2.2474 -1.3254 8 6 7.6537 2.2237 -1.3991 9 6 8.4143 2.2420 -0.2501 10 6 7.7882 2.2856 1.0108 11 6 8.5676 2.3103 2.1909 12 1 9.5561 1.8754 2.1943 13 6 8.0580 2.8981 3.3534 14 7 7.0410 3.7183 3.2803 15 14 8.8294 2.5122 5.0104 16 1 9.9561 1.5633 4.8229 17 1 9.3347 3.7660 5.6252 18 1 7.8103 1.9003 5.9004 19 6 6.3868 2.3101 1.0905 20 6 4.2750 -0.1267 0.0004 21 6 5.7052 -0.1998 0.0008 22 7 6.8396 -0.2577 0.0016 23 6 3.5150 -1.2638 0.0066 24 7 2.1699 -1.1879 0.0071 25 1 1.6554 -2.0102 0.0119 26 1 -0.3634 0.0057 1.0276 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8928 -0.5089 29 1 1.6161 2.1069 0.0004 30 1 5.6865 2.2322 -2.2319 31 1 8.1390 2.1906 -2.3633 32 1 9.4922 2.2236 -0.3167 33 1 6.6874 4.1256 4.0865 34 1 5.8977 2.3432 2.0528 35 1 3.9969 -2.2303 0.0121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651072902.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:00 Heat of formation + Delta-G solvation = 81.230148 kcal Electronic energy + Delta-G solvation = -20659.286266 eV Core-core repulsion = 17621.647426 eV Total energy + Delta-G solvation = -3037.638840 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54519 -39.82893 -37.21806 -36.44438 -35.32984 -34.02064 -32.49227 -31.44688 -29.63117 -28.32739 -27.15632 -24.65328 -23.72848 -22.80693 -21.14312 -20.98756 -19.19358 -18.02903 -17.55939 -17.11204 -16.59367 -16.53331 -15.89339 -15.44741 -15.35843 -14.79250 -14.45220 -14.24015 -14.15418 -13.80188 -13.52486 -13.34650 -13.20310 -13.03963 -12.95696 -12.81200 -12.76449 -12.47085 -12.34267 -12.05274 -11.79200 -11.33373 -11.12691 -10.61006 -10.20648 -9.30406 -8.74558 -8.46673 -8.23929 -6.38806 0.12461 0.45693 0.93095 1.09737 1.28082 1.43939 1.46687 1.95611 2.16380 2.20595 2.23498 2.69448 3.02054 3.40157 3.60232 3.73543 3.77040 4.13305 4.36930 4.42698 4.50923 4.59700 4.66923 4.87227 4.92086 5.05043 5.10366 5.20439 5.23579 5.36800 5.47447 5.53618 5.78352 5.94337 5.97153 6.07805 6.17226 6.33510 6.43938 6.63898 6.93793 7.01921 7.05754 7.54659 8.33688 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019086 B = 0.005681 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.714406 B = 4927.171845 C = 5476.845654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.174 3.826 3 C -0.210 4.210 4 C 0.261 3.739 5 N -0.593 5.593 6 C 0.131 3.869 7 C -0.262 4.262 8 C -0.075 4.075 9 C -0.242 4.242 10 C 0.114 3.886 11 C -0.509 4.509 12 H 0.068 0.932 13 C 0.032 3.968 14 N -0.832 5.832 15 Si 0.984 3.016 16 H -0.259 1.259 17 H -0.259 1.259 18 H -0.262 1.262 19 C -0.194 4.194 20 C -0.217 4.217 21 C 0.251 3.749 22 N -0.445 5.445 23 C 0.243 3.757 24 N -0.563 5.563 25 H 0.449 0.551 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.285 0.715 34 H 0.080 0.920 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.462 -15.313 -3.442 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.065 3.935 3 C -0.235 4.235 4 C 0.090 3.910 5 N -0.306 5.306 6 C 0.031 3.969 7 C -0.284 4.284 8 C -0.093 4.093 9 C -0.262 4.262 10 C 0.112 3.888 11 C -0.539 4.539 12 H 0.086 0.914 13 C -0.181 4.181 14 N -0.458 5.458 15 Si 0.803 3.197 16 H -0.183 1.183 17 H -0.184 1.184 18 H -0.186 1.186 19 C -0.216 4.216 20 C -0.232 4.232 21 C -0.062 4.062 22 N -0.122 5.122 23 C 0.105 3.895 24 N -0.169 5.169 25 H 0.292 0.708 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.128 0.872 29 H 0.168 0.832 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.961 -14.204 -3.294 23.919 hybrid contribution 0.953 -0.010 0.599 1.126 sum -18.008 -14.214 -2.695 23.099 Atomic orbital electron populations 1.21176 0.83876 1.06568 1.05652 1.20578 0.96499 0.84056 0.92407 1.20382 0.89423 0.99340 1.14326 1.20917 0.94666 0.86338 0.89063 1.69046 1.05903 1.26457 1.29198 1.18510 0.89188 0.96258 0.92946 1.20611 0.94096 1.18885 0.94765 1.20514 0.93539 0.98471 0.96823 1.21005 0.97261 1.14927 0.92989 1.17606 0.92092 0.86588 0.92553 1.19774 1.02460 1.35705 0.95920 0.91406 1.26833 0.94734 0.91793 1.04782 1.69986 1.22731 1.21095 1.31972 0.85166 0.79123 0.79460 0.75920 1.18255 1.18368 1.18606 1.21056 0.93584 1.12176 0.94825 1.17283 0.84977 0.95798 1.25189 1.25319 0.92848 0.94391 0.93680 1.81273 1.12841 1.07622 1.10466 1.21934 0.83222 0.98872 0.85455 1.40905 1.04484 1.09891 1.61669 0.70819 0.87864 0.88547 0.87200 0.83165 0.88996 0.87253 0.89586 0.90448 0.90213 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.15 10.03 71.24 0.71 0.56 16 2 C 0.17 1.96 6.79 41.09 0.28 2.24 16 3 C -0.21 -5.10 9.59 22.42 0.21 -4.89 16 4 C 0.26 9.86 6.80 42.41 0.29 10.15 16 5 N -0.59 -30.13 10.40 -176.86 -1.84 -31.97 16 6 C 0.13 7.48 3.53 39.16 0.14 7.61 16 7 C -0.26 -14.44 8.46 22.77 0.19 -14.24 16 8 C -0.07 -4.10 9.27 22.17 0.21 -3.90 16 9 C -0.24 -14.48 9.04 22.81 0.21 -14.28 16 10 C 0.11 7.32 4.61 -21.33 -0.10 7.22 16 11 C -0.51 -32.13 9.04 23.46 0.21 -31.92 16 12 H 0.07 4.19 7.91 -2.91 -0.02 4.17 16 13 C 0.03 1.87 5.12 85.24 0.44 2.31 16 14 N -0.83 -50.59 11.11 21.82 0.24 -50.34 16 15 Si 0.98 43.60 29.59 68.60 2.03 45.63 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 19 C -0.19 -12.27 6.94 23.03 0.16 -12.11 16 20 C -0.22 -7.14 5.88 -19.93 -0.12 -7.26 16 21 C 0.25 11.06 10.83 88.33 0.96 12.02 16 22 N -0.44 -22.65 14.43 19.00 0.27 -22.38 16 23 C 0.24 3.69 10.88 83.91 0.91 4.60 16 24 N -0.56 -3.76 5.19 -182.87 -0.95 -4.71 16 25 H 0.45 -1.96 8.71 -92.71 -0.81 -2.77 16 26 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.10 0.20 8.06 -2.38 -0.02 0.18 16 28 H 0.11 -0.54 8.12 -2.39 -0.02 -0.55 16 29 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.11 5.23 8.06 -2.91 -0.02 5.21 16 32 H 0.09 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.29 15.61 8.30 -92.71 -0.77 14.85 16 34 H 0.08 5.42 6.33 -2.91 -0.02 5.40 16 35 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -100.40 304.72 4.79 -95.62 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.33 Total: 10.05 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 4.70 Total: -41.89 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -2.27 Total: -109.41 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -100.40 4.79 -95.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651072902.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.846 kcal (2) G-P(sol) polarization free energy of solvation -100.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds