Wall clock time and date at job start Tue Mar 31 2020 01:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32577 * 119.99547 * 2 1 4 4 C 1.47805 * 120.00515 * 7.18889 * 3 2 1 5 5 C 1.39534 * 120.12979 * 213.56224 * 4 3 2 6 6 C 1.37947 * 119.86987 * 179.74292 * 5 4 3 7 7 C 1.38464 * 120.12672 * 0.50786 * 6 5 4 8 8 Cl 1.73600 * 119.87234 * 179.74554 * 7 6 5 9 9 C 1.38473 * 120.25937 * 359.76568 * 7 6 5 10 10 C 1.37942 * 120.12565 * 359.97438 * 9 7 6 11 11 C 1.50698 * 120.00334 * 179.97438 * 2 1 3 12 12 N 1.46897 * 109.47361 * 275.00542 * 11 2 1 13 13 C 1.46900 * 111.00162 * 179.97438 * 12 11 2 14 14 H 1.09000 * 109.46603 * 35.00209 * 13 12 11 15 15 C 1.52996 * 109.46966 * 274.99889 * 13 12 11 16 16 C 1.50702 * 109.47046 * 154.99797 * 13 12 11 17 17 H 1.08001 * 120.00087 * 5.71379 * 16 13 12 18 18 C 1.37878 * 120.00126 * 185.71531 * 16 13 12 19 19 N 1.31504 * 120.00267 * 198.40512 * 18 16 13 20 20 Si 1.86802 * 119.99607 * 18.67466 * 18 16 13 21 21 H 1.48506 * 109.47011 * 179.72915 * 20 18 16 22 22 H 1.48492 * 109.47556 * 299.72721 * 20 18 16 23 23 H 1.48503 * 109.47184 * 59.73070 * 20 18 16 24 24 H 1.08996 * 109.47564 * 268.05681 * 1 2 3 25 25 H 1.08999 * 109.46944 * 28.05862 * 1 2 3 26 26 H 1.09005 * 109.46597 * 148.05161 * 1 2 3 27 27 H 1.08007 * 119.99834 * 187.18387 * 3 2 1 28 28 H 1.07998 * 120.06775 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.94116 * 180.24906 * 6 5 4 30 30 H 1.08002 * 119.93178 * 179.97438 * 9 7 6 31 31 H 1.07996 * 120.06247 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47195 * 154.99860 * 11 2 1 33 33 H 1.09005 * 109.46586 * 35.00366 * 11 2 1 34 34 H 1.00905 * 110.99815 * 303.95595 * 12 11 2 35 35 H 1.08998 * 109.47245 * 295.42287 * 15 13 12 36 36 H 1.08996 * 109.47064 * 55.43031 * 15 13 12 37 37 H 1.09007 * 109.46755 * 175.42997 * 15 13 12 38 38 H 0.97004 * 119.99845 * 355.22789 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 1.4395 2.4232 0.1602 5 6 1.8886 3.5739 -0.4888 6 6 1.1999 4.7598 -0.3398 7 6 0.0710 4.8121 0.4603 8 17 -0.7869 6.3095 0.6484 9 6 -0.3761 3.6747 1.1113 10 6 0.3014 2.4820 0.9655 11 6 2.2606 -1.3050 0.0006 12 7 2.4008 -1.7889 1.3805 13 6 3.1316 -3.0626 1.4200 14 1 3.8957 -3.0673 0.6427 15 6 2.1565 -4.2176 1.1837 16 6 3.7855 -3.2250 2.7680 17 1 3.5951 -2.5055 3.5507 18 6 4.6267 -4.2919 3.0022 19 7 4.9088 -4.6484 4.2362 20 14 5.3718 -5.2264 1.5666 21 1 6.2384 -6.3167 2.0819 22 1 4.2858 -5.8076 0.7372 23 1 6.1835 -4.2980 0.7394 24 1 -0.3634 -0.0348 1.0270 25 1 -0.3633 0.9069 -0.4834 26 1 -0.3633 -0.8721 -0.5438 27 1 3.2435 1.1519 -0.1170 28 1 2.7716 3.5354 -1.1095 29 1 1.5441 5.6502 -0.8448 30 1 -1.2570 3.7215 1.7344 31 1 -0.0484 1.5954 1.4734 32 1 3.2488 -1.1542 -0.4338 33 1 1.7132 -2.0408 -0.5886 34 1 2.8481 -1.0967 1.9627 35 1 1.4409 -4.2627 2.0046 36 1 1.6243 -4.0577 0.2460 37 1 2.7098 -5.1554 1.1322 38 1 4.5816 -4.1196 4.9807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:38 Heat of formation + Delta-G solvation = 25.666370 kcal Electronic energy + Delta-G solvation = -18548.123142 eV Core-core repulsion = 15609.182369 eV Total energy + Delta-G solvation = -2938.940773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.68389 -37.24431 -36.52463 -34.86412 -32.41008 -31.41376 -30.62432 -28.84358 -27.20148 -25.27676 -24.03661 -22.82276 -21.86437 -19.67351 -18.61705 -17.50733 -16.97894 -15.91369 -15.57400 -14.95781 -14.53551 -14.40799 -13.90825 -13.82723 -13.52262 -13.48913 -12.89664 -12.66108 -12.17207 -12.04541 -11.91248 -11.71931 -11.62507 -11.56500 -11.35032 -11.04235 -10.94827 -10.53373 -10.44744 -9.97377 -9.75292 -9.55321 -9.20952 -8.92441 -8.24982 -8.14222 -7.54661 -6.50266 -4.11065 0.70889 1.12482 1.93016 2.28141 3.34698 3.38455 3.56230 3.56889 4.44562 4.57647 4.65743 4.67348 5.01828 5.09039 5.12321 5.21536 5.27986 5.29930 5.48474 5.65543 5.76398 5.83406 5.89156 5.99786 6.01565 6.07197 6.08804 6.28278 6.43251 6.58154 6.63455 6.67985 6.77546 6.88618 6.91226 7.44601 7.69514 8.06982 8.35432 8.43994 8.91471 9.57758 10.89812 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036359 B = 0.002921 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.918748 B = 9582.286452 C = 9666.546157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.154 4.154 4 C -0.031 4.031 5 C -0.103 4.103 6 C -0.112 4.112 7 C -0.043 4.043 8 Cl -0.080 7.080 9 C -0.111 4.111 10 C -0.105 4.105 11 C 0.087 3.913 12 N -0.673 5.673 13 C 0.189 3.811 14 H -0.007 1.007 15 C -0.138 4.138 16 C -0.607 4.607 17 H 0.060 0.940 18 C 0.033 3.967 19 N -0.903 5.903 20 Si 1.047 2.953 21 H -0.285 1.285 22 H -0.273 1.273 23 H -0.285 1.285 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.338 0.662 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.050 0.950 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 17.225 -10.987 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.173 4.173 4 C -0.031 4.031 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.069 4.069 8 Cl -0.051 7.051 9 C -0.129 4.129 10 C -0.123 4.123 11 C -0.042 4.042 12 N -0.305 5.305 13 C 0.081 3.919 14 H 0.010 0.990 15 C -0.196 4.196 16 C -0.645 4.645 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.537 5.537 20 Si 0.875 3.125 21 H -0.211 1.211 22 H -0.200 1.200 23 H -0.212 1.212 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.161 0.839 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.069 0.931 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.263 15.725 -11.324 21.478 hybrid contribution -0.066 1.841 0.279 1.863 sum -9.330 17.566 -11.045 22.750 Atomic orbital electron populations 1.21132 0.92272 1.02050 1.02257 1.22233 0.96016 0.94472 0.94601 1.21430 0.99017 0.90343 1.06526 1.19157 0.94488 0.93711 0.95735 1.21249 1.00000 0.91455 0.99470 1.20943 0.94423 0.98844 0.98840 1.20978 0.96192 0.87524 1.02210 1.98360 1.76806 1.33218 1.96734 1.21010 1.00850 0.91236 0.99845 1.21698 0.94748 0.97860 0.97969 1.21025 0.97039 0.92730 0.93439 1.60595 1.57025 1.06628 1.06231 1.19428 0.89895 0.85708 0.96905 0.98954 1.22128 0.99853 0.99185 0.98463 1.22068 1.30496 1.14426 0.97526 0.92183 1.25714 0.94689 0.95703 1.01214 1.70851 1.47409 1.36645 0.98804 0.84016 0.76794 0.76519 0.75148 1.21075 1.19970 1.21201 0.90540 0.91665 0.91772 0.86142 0.85048 0.85152 0.85007 0.83881 0.95332 0.90962 0.84409 0.93072 0.96138 0.93141 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.19 36.01 0.29 -1.13 16 2 C -0.07 -0.99 5.51 -101.25 -0.56 -1.54 16 3 C -0.15 -1.95 9.42 -37.58 -0.35 -2.31 16 4 C -0.03 -0.36 5.21 -105.01 -0.55 -0.90 16 5 C -0.10 -1.06 9.78 -39.20 -0.38 -1.45 16 6 C -0.11 -1.10 9.81 -39.60 -0.39 -1.49 16 7 C -0.04 -0.44 6.32 -39.41 -0.25 -0.69 16 8 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.27 16 9 C -0.11 -1.14 9.81 -39.60 -0.39 -1.53 16 10 C -0.10 -1.16 7.61 -39.20 -0.30 -1.46 16 11 C 0.09 1.42 5.65 -4.98 -0.03 1.39 16 12 N -0.67 -13.56 6.29 -109.22 -0.69 -14.25 16 13 C 0.19 4.44 2.19 -68.87 -0.15 4.29 16 14 H -0.01 -0.17 6.43 -51.93 -0.33 -0.50 16 15 C -0.14 -3.08 9.12 37.16 0.34 -2.74 16 16 C -0.61 -16.81 8.81 -34.44 -0.30 -17.12 16 17 H 0.06 1.79 7.92 -52.49 -0.42 1.38 16 18 C 0.03 0.93 5.33 -17.82 -0.10 0.83 16 19 N -0.90 -27.50 13.70 55.43 0.76 -26.74 16 20 Si 1.05 24.88 26.45 -169.99 -4.50 20.39 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.01 5.57 56.52 0.31 -5.70 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H 0.08 0.90 6.77 -51.93 -0.35 0.55 16 25 H 0.06 0.70 6.08 -51.93 -0.32 0.38 16 26 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 27 H 0.12 1.50 7.99 -52.48 -0.42 1.08 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.14 1.54 5.28 -52.49 -0.28 1.27 16 32 H 0.03 0.47 7.90 -51.93 -0.41 0.06 16 33 H 0.07 1.16 7.34 -51.93 -0.38 0.78 16 34 H 0.34 6.95 8.25 -39.29 -0.32 6.63 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.02 0.39 7.36 -51.93 -0.38 0.01 16 37 H 0.05 1.14 4.92 -51.93 -0.26 0.89 16 38 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -29.25 323.31 -9.38 -38.63 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.22 Total: 5.21 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -3.11 Total: -25.85 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.07 Total: -40.99 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.50 Total: 20.39 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.25 -9.38 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.298 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds