Wall clock time and date at job start Tue Mar 31 2020 01:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32577 * 119.99547 * 2 1 4 4 C 1.47805 * 120.00515 * 7.18889 * 3 2 1 5 5 C 1.39534 * 120.12979 * 213.56224 * 4 3 2 6 6 C 1.37947 * 119.86987 * 179.74292 * 5 4 3 7 7 C 1.38464 * 120.12672 * 0.50786 * 6 5 4 8 8 Cl 1.73600 * 119.87234 * 179.74554 * 7 6 5 9 9 C 1.38473 * 120.25937 * 359.76568 * 7 6 5 10 10 C 1.37942 * 120.12565 * 359.97438 * 9 7 6 11 11 C 1.50698 * 120.00334 * 179.97438 * 2 1 3 12 12 N 1.46897 * 109.47361 * 275.00542 * 11 2 1 13 13 C 1.46900 * 111.00162 * 179.97438 * 12 11 2 14 14 H 1.09000 * 109.46603 * 35.00209 * 13 12 11 15 15 C 1.52996 * 109.46966 * 274.99889 * 13 12 11 16 16 C 1.50702 * 109.47046 * 154.99797 * 13 12 11 17 17 H 1.08001 * 120.00087 * 5.71379 * 16 13 12 18 18 C 1.37878 * 120.00126 * 185.71531 * 16 13 12 19 19 N 1.31504 * 120.00267 * 198.40512 * 18 16 13 20 20 Si 1.86802 * 119.99607 * 18.67466 * 18 16 13 21 21 H 1.48506 * 109.47011 * 179.72915 * 20 18 16 22 22 H 1.48492 * 109.47556 * 299.72721 * 20 18 16 23 23 H 1.48503 * 109.47184 * 59.73070 * 20 18 16 24 24 H 1.08996 * 109.47564 * 268.05681 * 1 2 3 25 25 H 1.08999 * 109.46944 * 28.05862 * 1 2 3 26 26 H 1.09005 * 109.46597 * 148.05161 * 1 2 3 27 27 H 1.08007 * 119.99834 * 187.18387 * 3 2 1 28 28 H 1.07998 * 120.06775 * 359.97438 * 5 4 3 29 29 H 1.07996 * 119.94116 * 180.24906 * 6 5 4 30 30 H 1.08002 * 119.93178 * 179.97438 * 9 7 6 31 31 H 1.07996 * 120.06247 * 180.02562 * 10 9 7 32 32 H 1.09000 * 109.47195 * 154.99860 * 11 2 1 33 33 H 1.09005 * 109.46586 * 35.00366 * 11 2 1 34 34 H 1.00905 * 110.99815 * 303.95595 * 12 11 2 35 35 H 1.08998 * 109.47245 * 295.42287 * 15 13 12 36 36 H 1.08996 * 109.47064 * 55.43031 * 15 13 12 37 37 H 1.09007 * 109.46755 * 175.42997 * 15 13 12 38 38 H 0.97004 * 119.99845 * 355.22789 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 1.4395 2.4232 0.1602 5 6 1.8886 3.5739 -0.4888 6 6 1.1999 4.7598 -0.3398 7 6 0.0710 4.8121 0.4603 8 17 -0.7869 6.3095 0.6484 9 6 -0.3761 3.6747 1.1113 10 6 0.3014 2.4820 0.9655 11 6 2.2606 -1.3050 0.0006 12 7 2.4008 -1.7889 1.3805 13 6 3.1316 -3.0626 1.4200 14 1 3.8957 -3.0673 0.6427 15 6 2.1565 -4.2176 1.1837 16 6 3.7855 -3.2250 2.7680 17 1 3.5951 -2.5055 3.5507 18 6 4.6267 -4.2919 3.0022 19 7 4.9088 -4.6484 4.2362 20 14 5.3718 -5.2264 1.5666 21 1 6.2384 -6.3167 2.0819 22 1 4.2858 -5.8076 0.7372 23 1 6.1835 -4.2980 0.7394 24 1 -0.3634 -0.0348 1.0270 25 1 -0.3633 0.9069 -0.4834 26 1 -0.3633 -0.8721 -0.5438 27 1 3.2435 1.1519 -0.1170 28 1 2.7716 3.5354 -1.1095 29 1 1.5441 5.6502 -0.8448 30 1 -1.2570 3.7215 1.7344 31 1 -0.0484 1.5954 1.4734 32 1 3.2488 -1.1542 -0.4338 33 1 1.7132 -2.0408 -0.5886 34 1 2.8481 -1.0967 1.9627 35 1 1.4409 -4.2627 2.0046 36 1 1.6243 -4.0577 0.2460 37 1 2.7098 -5.1554 1.1322 38 1 4.5816 -4.1196 4.9807 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:37 Heat of formation + Delta-G solvation = 9.175471 kcal Electronic energy + Delta-G solvation = -18548.838241 eV Core-core repulsion = 15609.182369 eV Total energy + Delta-G solvation = -2939.655872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52480 -38.47988 -37.50576 -36.23684 -34.32468 -32.21606 -31.89052 -30.21958 -28.17875 -27.03418 -25.62604 -23.62168 -22.81543 -21.53694 -19.94672 -19.25492 -17.82194 -17.00560 -16.57149 -16.40547 -15.97067 -15.45574 -15.35223 -14.87195 -14.66438 -14.55020 -14.19811 -14.08579 -13.80121 -13.31177 -13.18310 -12.98053 -12.77859 -12.67370 -12.48539 -12.31603 -12.25090 -11.83917 -11.78642 -11.70197 -11.52699 -10.98492 -10.49307 -10.39675 -9.99908 -9.26807 -8.97656 -8.74808 -6.38091 -0.16206 0.33651 1.14598 1.30494 1.45361 1.52017 1.71590 2.47735 2.73033 3.05141 3.55976 3.79157 3.82313 3.93078 3.99494 4.17608 4.34088 4.45096 4.53019 4.64564 4.68995 4.72551 4.83171 4.83611 4.87092 4.97466 5.04420 5.08886 5.12315 5.22264 5.25382 5.40172 5.59774 5.67064 5.77452 5.80308 5.91953 6.01914 6.27657 6.65400 6.76130 7.40381 8.62335 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036359 B = 0.002921 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.918748 B = 9582.286452 C = 9666.546157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.049 4.049 5 C -0.102 4.102 6 C -0.113 4.113 7 C -0.048 4.048 8 Cl -0.074 7.074 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.089 3.911 12 N -0.678 5.678 13 C 0.190 3.810 14 H -0.002 1.002 15 C -0.133 4.133 16 C -0.609 4.609 17 H 0.022 0.978 18 C -0.019 4.019 19 N -0.937 5.937 20 Si 1.085 2.915 21 H -0.289 1.289 22 H -0.241 1.241 23 H -0.267 1.267 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.332 0.668 35 H 0.034 0.966 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.065 18.126 -13.411 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.160 4.160 4 C -0.049 4.049 5 C -0.121 4.121 6 C -0.132 4.132 7 C -0.075 4.075 8 Cl -0.045 7.045 9 C -0.134 4.134 10 C -0.128 4.128 11 C -0.039 4.039 12 N -0.308 5.308 13 C 0.081 3.919 14 H 0.015 0.985 15 C -0.191 4.191 16 C -0.647 4.647 17 H 0.040 0.960 18 C -0.217 4.217 19 N -0.572 5.572 20 Si 0.906 3.094 21 H -0.216 1.216 22 H -0.165 1.165 23 H -0.192 1.192 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.149 0.851 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.837 16.656 -13.759 23.738 hybrid contribution 0.062 1.751 1.080 2.058 sum -9.775 18.406 -12.680 24.395 Atomic orbital electron populations 1.21084 0.91044 1.02690 1.02224 1.22083 0.96772 0.93370 0.96778 1.21544 0.99131 0.90737 1.04559 1.19189 0.95052 0.93704 0.96978 1.21465 1.00405 0.91042 0.99142 1.21190 0.94033 0.99420 0.98540 1.21161 0.96413 0.87788 1.02105 1.98364 1.76690 1.32762 1.96698 1.21173 1.01261 0.91008 1.00004 1.21748 0.94766 0.98236 0.98038 1.21034 0.97616 0.94290 0.90964 1.60535 1.55982 1.05546 1.08740 1.19303 0.90431 0.87948 0.94213 0.98470 1.22017 0.99300 0.98266 0.99522 1.22314 1.30395 1.13239 0.98749 0.95999 1.27178 0.94828 0.97105 1.02620 1.70987 1.49242 1.37569 0.99446 0.83566 0.77185 0.75823 0.72830 1.21561 1.16524 1.19182 0.90856 0.90612 0.91560 0.86126 0.83342 0.83232 0.83735 0.83941 0.95269 0.90348 0.85141 0.94635 0.92916 0.93483 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 8.19 71.24 0.58 -1.94 16 2 C -0.09 -2.30 5.51 -17.60 -0.10 -2.40 16 3 C -0.14 -3.36 9.42 23.65 0.22 -3.14 16 4 C -0.05 -1.06 5.21 -20.12 -0.10 -1.16 16 5 C -0.10 -1.88 9.78 22.51 0.22 -1.66 16 6 C -0.11 -1.96 9.81 22.25 0.22 -1.74 16 7 C -0.05 -0.90 6.32 22.38 0.14 -0.76 16 8 Cl -0.07 -1.29 28.95 -2.72 -0.08 -1.37 16 9 C -0.12 -2.21 9.81 22.26 0.22 -1.99 16 10 C -0.11 -2.29 7.61 22.52 0.17 -2.12 16 11 C 0.09 2.78 5.65 85.56 0.48 3.26 16 12 N -0.68 -26.83 6.29 -499.47 -3.14 -29.97 16 13 C 0.19 8.74 2.19 44.17 0.10 8.84 16 14 H 0.00 -0.10 6.43 -2.39 -0.02 -0.11 16 15 C -0.13 -5.66 9.12 71.98 0.66 -5.01 16 16 C -0.61 -34.30 8.81 25.60 0.23 -34.08 16 17 H 0.02 1.36 7.92 -2.91 -0.02 1.34 16 18 C -0.02 -1.08 5.33 84.66 0.45 -0.62 16 19 N -0.94 -58.62 13.70 21.45 0.29 -58.33 16 20 Si 1.08 49.04 26.45 68.60 1.81 50.85 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.24 -9.61 5.57 99.48 0.55 -9.05 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H 0.07 1.65 6.77 -2.39 -0.02 1.63 16 25 H 0.08 1.49 6.08 -2.39 -0.01 1.48 16 26 H 0.07 1.41 8.11 -2.38 -0.02 1.39 16 27 H 0.12 2.82 7.99 -2.91 -0.02 2.80 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 30 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.14 2.94 5.28 -2.91 -0.02 2.92 16 32 H 0.03 0.91 7.90 -2.39 -0.02 0.89 16 33 H 0.08 2.33 7.34 -2.38 -0.02 2.31 16 34 H 0.33 13.75 8.25 -89.69 -0.74 13.01 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.88 7.36 -2.39 -0.02 1.87 16 37 H 0.05 2.01 4.92 -2.38 -0.01 2.00 16 38 H 0.25 16.05 8.73 -92.71 -0.81 15.24 16 Total: -1.00 -63.30 323.31 2.51 -60.78 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.14 Total: 22.55 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 3.49 Total: -44.51 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -2.85 Total: -88.30 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 1.81 Total: 50.85 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -63.30 2.51 -60.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.960 kcal (2) G-P(sol) polarization free energy of solvation -63.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds