Wall clock time and date at job start Tue Mar 31 2020 01:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32577 * 119.99832 * 2 1 4 4 C 1.47812 * 119.99713 * 173.25290 * 3 2 1 5 5 C 1.39538 * 120.12990 * 320.21301 * 4 3 2 6 6 C 1.37944 * 119.87212 * 179.74435 * 5 4 3 7 7 C 1.38465 * 120.12320 * 0.50867 * 6 5 4 8 8 Cl 1.73601 * 119.86961 * 179.74085 * 7 6 5 9 9 C 1.38460 * 120.26372 * 359.77123 * 7 6 5 10 10 C 1.37953 * 120.12485 * 359.97350 * 9 7 6 11 11 C 1.50695 * 120.00354 * 180.02562 * 2 1 3 12 12 N 1.46900 * 109.46977 * 290.73576 * 11 2 1 13 13 C 1.46900 * 110.99998 * 180.76120 * 12 11 2 14 14 H 1.08998 * 109.47245 * 325.00054 * 13 12 11 15 15 C 1.53001 * 109.47350 * 84.99514 * 13 12 11 16 16 C 1.50702 * 109.47340 * 204.99799 * 13 12 11 17 17 H 1.07998 * 119.99556 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00220 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00237 * 179.97438 * 18 16 13 20 20 Si 1.86806 * 120.00065 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46869 * 90.00445 * 20 18 16 22 22 H 1.48500 * 109.47069 * 210.00237 * 20 18 16 23 23 H 1.48494 * 109.47099 * 330.00139 * 20 18 16 24 24 H 1.09005 * 109.46440 * 269.99904 * 1 2 3 25 25 H 1.09001 * 109.47392 * 29.99739 * 1 2 3 26 26 H 1.08993 * 109.47211 * 150.00101 * 1 2 3 27 27 H 1.08001 * 119.99856 * 353.25216 * 3 2 1 28 28 H 1.08002 * 120.06570 * 0.02562 * 5 4 3 29 29 H 1.07996 * 119.93823 * 180.25632 * 6 5 4 30 30 H 1.07999 * 119.94289 * 179.97438 * 9 7 6 31 31 H 1.08007 * 120.06182 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47643 * 170.73441 * 11 2 1 33 33 H 1.09007 * 109.47370 * 50.72938 * 11 2 1 34 34 H 1.00901 * 111.00003 * 304.71012 * 12 11 2 35 35 H 1.09001 * 109.47124 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.47296 * 300.00305 * 15 13 12 37 37 H 1.09011 * 109.47102 * 60.00209 * 15 13 12 38 38 H 0.97001 * 120.00441 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 3.6403 1.1526 0.1504 5 6 4.2557 0.2742 1.0431 6 6 5.6288 0.2792 1.1754 7 6 6.3953 1.1608 0.4321 8 17 8.1223 1.1661 0.6087 9 6 5.7898 2.0387 -0.4510 10 6 4.4179 2.0391 -0.5955 11 6 2.2605 -1.3050 -0.0006 12 7 2.0807 -1.9748 1.2944 13 6 2.8177 -3.2449 1.3370 14 1 2.7996 -3.7087 0.3508 15 6 4.2671 -2.9799 1.7494 16 6 2.1713 -4.1675 2.3380 17 1 1.3003 -3.8426 2.8878 18 6 2.6923 -5.4258 2.5526 19 7 2.1284 -6.2308 3.4266 20 14 4.1992 -5.9873 1.6021 21 1 5.4248 -5.6223 2.3568 22 1 4.1496 -7.4604 1.4210 23 1 4.2209 -5.3257 0.2728 24 1 -0.3632 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6354 2.0802 -0.1099 28 1 3.6585 -0.4113 1.6260 29 1 6.1065 -0.4030 1.8629 30 1 6.3927 2.7244 -1.0279 31 1 3.9467 2.7241 -1.2850 32 1 3.3206 -1.1125 -0.1660 33 1 1.8789 -1.9446 -0.7965 34 1 2.3559 -1.3715 2.0549 35 1 4.8138 -3.9224 1.7814 36 1 4.7347 -2.3126 1.0254 37 1 4.2853 -2.5161 2.7357 38 1 2.4948 -7.1162 3.5773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:42 Heat of formation + Delta-G solvation = 40.259657 kcal Electronic energy + Delta-G solvation = -19463.256407 eV Core-core repulsion = 16524.948447 eV Total energy + Delta-G solvation = -2938.307960 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.74487 -37.31582 -36.35971 -34.88867 -32.23664 -31.14344 -30.92590 -29.30182 -26.52622 -25.33740 -24.44765 -22.78002 -21.95553 -20.31298 -18.43188 -17.27978 -16.47887 -15.70671 -15.56126 -14.91345 -14.87352 -14.11306 -13.97426 -13.71341 -13.35026 -13.29795 -12.91965 -12.68958 -12.58654 -12.25188 -11.93419 -11.75801 -11.62788 -11.41643 -11.21831 -11.13248 -10.90816 -10.78404 -10.37624 -10.12299 -9.61022 -9.40938 -9.25726 -9.02069 -8.58213 -8.06270 -7.48192 -6.06067 -4.03712 0.82631 1.23254 2.05535 2.28481 3.24419 3.34701 3.37280 3.62954 4.38890 4.65618 4.76376 4.78286 4.94108 5.11660 5.19773 5.24819 5.25980 5.47574 5.61996 5.72883 5.82222 5.86507 5.97568 6.05006 6.09986 6.15459 6.16191 6.20681 6.26342 6.40493 6.46530 6.62829 6.69477 6.72540 6.91194 7.07747 7.66890 7.84365 8.22214 8.66152 9.05121 9.56435 11.07361 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.005791 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.634408 B = 4833.552358 C = 6486.399493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.157 4.157 4 C -0.037 4.037 5 C -0.100 4.100 6 C -0.108 4.108 7 C -0.040 4.040 8 Cl -0.079 7.079 9 C -0.114 4.114 10 C -0.105 4.105 11 C 0.070 3.930 12 N -0.661 5.661 13 C 0.182 3.818 14 H 0.034 0.966 15 C -0.188 4.188 16 C -0.498 4.498 17 H 0.082 0.918 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.884 3.116 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.270 1.270 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.328 0.672 35 H 0.046 0.954 36 H 0.030 0.970 37 H 0.054 0.946 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 17.605 -8.392 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.074 4.074 3 C -0.176 4.176 4 C -0.038 4.038 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.066 4.066 8 Cl -0.050 7.050 9 C -0.132 4.132 10 C -0.123 4.123 11 C -0.059 4.059 12 N -0.293 5.293 13 C 0.073 3.927 14 H 0.052 0.948 15 C -0.247 4.247 16 C -0.536 4.536 17 H 0.100 0.900 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.195 1.195 24 H 0.097 0.903 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.140 0.860 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.911 17.103 -8.469 19.706 hybrid contribution 2.098 -0.175 -0.335 2.132 sum 7.009 16.928 -8.804 20.327 Atomic orbital electron populations 1.20749 0.91175 1.01903 1.02823 1.22287 0.96405 0.94272 0.94427 1.21385 0.91212 0.97861 1.07161 1.19157 0.93818 0.95214 0.95575 1.21742 0.94050 0.97997 0.98030 1.21059 0.93755 0.98346 0.99495 1.20969 0.84302 1.00317 1.01029 1.98360 1.11571 1.98063 1.97029 1.20918 0.94970 0.98886 0.98452 1.21174 0.92567 0.99105 0.99439 1.21390 0.97307 0.92221 0.94993 1.60781 1.61339 1.05806 1.01385 1.19678 0.87538 0.87627 0.97816 0.94774 1.22972 1.01131 1.00261 1.00294 1.20956 1.14008 0.97301 1.21376 0.89986 1.24925 0.96860 0.96567 0.94942 1.69880 1.40968 1.08558 1.34482 0.86928 0.83670 0.76920 0.81022 1.20754 1.22419 1.19490 0.90346 0.92544 0.91307 0.86042 0.84222 0.84826 0.85196 0.85141 0.94170 0.90600 0.85238 0.93536 0.95068 0.92717 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.04 36.01 0.36 -0.95 16 2 C -0.07 -0.98 5.49 -101.26 -0.56 -1.54 16 3 C -0.16 -1.88 9.38 -37.57 -0.35 -2.24 16 4 C -0.04 -0.47 5.11 -105.01 -0.54 -1.01 16 5 C -0.10 -1.39 6.41 -39.20 -0.25 -1.64 16 6 C -0.11 -1.46 9.35 -39.61 -0.37 -1.83 16 7 C -0.04 -0.50 6.32 -39.42 -0.25 -0.74 16 8 Cl -0.08 -0.93 28.95 -51.86 -1.50 -2.43 16 9 C -0.11 -1.25 9.81 -39.60 -0.39 -1.64 16 10 C -0.10 -1.14 9.78 -39.20 -0.38 -1.53 16 11 C 0.07 1.13 4.63 -4.98 -0.02 1.10 16 12 N -0.66 -12.69 6.05 -109.22 -0.66 -13.35 16 13 C 0.18 4.14 2.17 -68.86 -0.15 3.99 16 14 H 0.03 0.82 6.87 -51.93 -0.36 0.46 16 15 C -0.19 -3.90 7.78 37.16 0.29 -3.61 16 16 C -0.50 -13.73 9.42 -34.44 -0.32 -14.06 16 17 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 19 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 20 Si 0.88 21.81 24.37 -169.99 -4.14 17.66 16 21 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 22 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.27 -6.39 6.53 56.52 0.37 -6.03 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 26 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 28 H 0.14 2.09 3.40 -52.49 -0.18 1.91 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.04 0.66 4.22 -51.93 -0.22 0.44 16 33 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 34 H 0.33 5.98 6.45 -39.29 -0.25 5.73 16 35 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 36 H 0.03 0.56 5.90 -51.93 -0.31 0.25 16 37 H 0.05 1.09 8.13 -51.92 -0.42 0.67 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -29.38 314.19 -8.71 -38.09 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.88 Total: 5.73 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.03 Total: -23.83 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.11 Total: -39.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.66 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.38 -8.71 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.345 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds