Wall clock time and date at job start Tue Mar 31 2020 01:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32577 * 119.99832 * 2 1 4 4 C 1.47812 * 119.99713 * 173.25290 * 3 2 1 5 5 C 1.39538 * 120.12990 * 320.21301 * 4 3 2 6 6 C 1.37944 * 119.87212 * 179.74435 * 5 4 3 7 7 C 1.38465 * 120.12320 * 0.50867 * 6 5 4 8 8 Cl 1.73601 * 119.86961 * 179.74085 * 7 6 5 9 9 C 1.38460 * 120.26372 * 359.77123 * 7 6 5 10 10 C 1.37953 * 120.12485 * 359.97350 * 9 7 6 11 11 C 1.50695 * 120.00354 * 180.02562 * 2 1 3 12 12 N 1.46900 * 109.46977 * 290.73576 * 11 2 1 13 13 C 1.46900 * 110.99998 * 180.76120 * 12 11 2 14 14 H 1.08998 * 109.47245 * 325.00054 * 13 12 11 15 15 C 1.53001 * 109.47350 * 84.99514 * 13 12 11 16 16 C 1.50702 * 109.47340 * 204.99799 * 13 12 11 17 17 H 1.07998 * 119.99556 * 359.97438 * 16 13 12 18 18 C 1.37868 * 120.00220 * 180.02562 * 16 13 12 19 19 N 1.31520 * 120.00237 * 179.97438 * 18 16 13 20 20 Si 1.86806 * 120.00065 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.46869 * 90.00445 * 20 18 16 22 22 H 1.48500 * 109.47069 * 210.00237 * 20 18 16 23 23 H 1.48494 * 109.47099 * 330.00139 * 20 18 16 24 24 H 1.09005 * 109.46440 * 269.99904 * 1 2 3 25 25 H 1.09001 * 109.47392 * 29.99739 * 1 2 3 26 26 H 1.08993 * 109.47211 * 150.00101 * 1 2 3 27 27 H 1.08001 * 119.99856 * 353.25216 * 3 2 1 28 28 H 1.08002 * 120.06570 * 0.02562 * 5 4 3 29 29 H 1.07996 * 119.93823 * 180.25632 * 6 5 4 30 30 H 1.07999 * 119.94289 * 179.97438 * 9 7 6 31 31 H 1.08007 * 120.06182 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47643 * 170.73441 * 11 2 1 33 33 H 1.09007 * 109.47370 * 50.72938 * 11 2 1 34 34 H 1.00901 * 111.00003 * 304.71012 * 12 11 2 35 35 H 1.09001 * 109.47124 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.47296 * 300.00305 * 15 13 12 37 37 H 1.09011 * 109.47102 * 60.00209 * 15 13 12 38 38 H 0.97001 * 120.00441 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1482 0.0000 4 6 3.6403 1.1526 0.1504 5 6 4.2557 0.2742 1.0431 6 6 5.6288 0.2792 1.1754 7 6 6.3953 1.1608 0.4321 8 17 8.1223 1.1661 0.6087 9 6 5.7898 2.0387 -0.4510 10 6 4.4179 2.0391 -0.5955 11 6 2.2605 -1.3050 -0.0006 12 7 2.0807 -1.9748 1.2944 13 6 2.8177 -3.2449 1.3370 14 1 2.7996 -3.7087 0.3508 15 6 4.2671 -2.9799 1.7494 16 6 2.1713 -4.1675 2.3380 17 1 1.3003 -3.8426 2.8878 18 6 2.6923 -5.4258 2.5526 19 7 2.1284 -6.2308 3.4266 20 14 4.1992 -5.9873 1.6021 21 1 5.4248 -5.6223 2.3568 22 1 4.1496 -7.4604 1.4210 23 1 4.2209 -5.3257 0.2728 24 1 -0.3632 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 1.6354 2.0802 -0.1099 28 1 3.6585 -0.4113 1.6260 29 1 6.1065 -0.4030 1.8629 30 1 6.3927 2.7244 -1.0279 31 1 3.9467 2.7241 -1.2850 32 1 3.3206 -1.1125 -0.1660 33 1 1.8789 -1.9446 -0.7965 34 1 2.3559 -1.3715 2.0549 35 1 4.8138 -3.9224 1.7814 36 1 4.7347 -2.3126 1.0254 37 1 4.2853 -2.5161 2.7357 38 1 2.4948 -7.1162 3.5773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494523.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:41 Heat of formation + Delta-G solvation = 22.893289 kcal Electronic energy + Delta-G solvation = -19464.009470 eV Core-core repulsion = 16524.948447 eV Total energy + Delta-G solvation = -2939.061023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73486 -38.55218 -37.42346 -36.24495 -34.21356 -32.12733 -31.92701 -30.87519 -27.46874 -27.20264 -25.95890 -23.72921 -22.91880 -22.14329 -19.55563 -18.80981 -17.93056 -17.01367 -16.66001 -16.36594 -16.15131 -15.64988 -15.18433 -14.84651 -14.60302 -14.42522 -14.26712 -14.06270 -13.97271 -13.51522 -13.43907 -13.12371 -12.78805 -12.68328 -12.52686 -12.41462 -12.13798 -12.02755 -11.81316 -11.71880 -11.47081 -11.19296 -10.76284 -10.42886 -10.01690 -9.08202 -8.98367 -8.27439 -6.29330 -0.12826 0.31199 1.13472 1.27765 1.30925 1.33479 1.42787 2.30615 2.69514 3.06710 3.53330 3.76747 3.83592 3.90136 3.98943 4.21579 4.34372 4.41152 4.47563 4.52436 4.61275 4.68432 4.75500 4.81897 4.86768 4.94493 4.97714 5.03958 5.14457 5.24277 5.24817 5.33578 5.46984 5.63787 5.65967 5.78744 5.94424 6.01759 6.65397 6.69457 6.78282 7.35523 8.89815 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.005791 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.634408 B = 4833.552358 C = 6486.399493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.052 4.052 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.047 4.047 8 Cl -0.076 7.076 9 C -0.110 4.110 10 C -0.094 4.094 11 C 0.075 3.925 12 N -0.670 5.670 13 C 0.188 3.812 14 H 0.026 0.974 15 C -0.178 4.178 16 C -0.500 4.500 17 H 0.038 0.962 18 C 0.012 3.988 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.268 1.268 22 H -0.299 1.299 23 H -0.253 1.253 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.055 0.945 27 H 0.152 0.848 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.333 0.667 35 H 0.034 0.966 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.736 20.173 -10.475 23.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.052 4.052 5 C -0.134 4.134 6 C -0.142 4.142 7 C -0.073 4.073 8 Cl -0.047 7.047 9 C -0.129 4.129 10 C -0.112 4.112 11 C -0.053 4.053 12 N -0.302 5.302 13 C 0.078 3.922 14 H 0.044 0.956 15 C -0.237 4.237 16 C -0.539 4.539 17 H 0.057 0.943 18 C -0.185 4.185 19 N -0.590 5.590 20 Si 0.774 3.226 21 H -0.194 1.194 22 H -0.227 1.227 23 H -0.177 1.177 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.169 0.831 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.173 0.827 31 H 0.180 0.820 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.153 0.847 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.289 19.702 -10.563 23.223 hybrid contribution 1.642 -0.846 0.334 1.877 sum 7.931 18.856 -10.229 22.871 Atomic orbital electron populations 1.20713 0.90328 1.02712 1.02444 1.22138 0.96921 0.93269 0.97274 1.21642 0.90953 0.98355 1.04135 1.19340 0.94377 0.95592 0.95936 1.21663 0.94156 0.98610 0.98930 1.21075 0.93861 0.99103 1.00167 1.21118 0.84526 1.00468 1.01231 1.98361 1.11264 1.98052 1.97045 1.21253 0.95404 0.98472 0.97760 1.21513 0.92414 0.98439 0.98841 1.21344 0.98006 0.93331 0.92667 1.60605 1.61024 1.05178 1.03349 1.19412 0.88739 0.88478 0.95528 0.95648 1.22802 0.99386 1.00196 1.01285 1.21243 1.12714 0.98383 1.21527 0.94334 1.25739 1.00100 0.96719 0.95939 1.70036 1.43115 1.09173 1.36715 0.85895 0.80068 0.76176 0.80420 1.19434 1.22672 1.17688 0.91314 0.89662 0.92622 0.83087 0.85832 0.85370 0.82713 0.81972 0.93869 0.91786 0.84700 0.94704 0.92343 0.92466 0.92636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 10.04 71.24 0.72 -1.64 16 2 C -0.10 -2.38 5.49 -17.60 -0.10 -2.48 16 3 C -0.13 -2.73 9.38 23.65 0.22 -2.51 16 4 C -0.05 -1.17 5.11 -20.12 -0.10 -1.27 16 5 C -0.12 -3.02 6.41 22.51 0.14 -2.87 16 6 C -0.12 -3.15 9.35 22.25 0.21 -2.94 16 7 C -0.05 -1.06 6.32 22.38 0.14 -0.92 16 8 Cl -0.08 -1.63 28.95 -2.72 -0.08 -1.71 16 9 C -0.11 -2.03 9.81 22.26 0.22 -1.81 16 10 C -0.09 -1.67 9.78 22.52 0.22 -1.45 16 11 C 0.07 2.36 4.63 85.56 0.40 2.76 16 12 N -0.67 -25.92 6.05 -499.46 -3.02 -28.94 16 13 C 0.19 8.59 2.17 44.17 0.10 8.68 16 14 H 0.03 1.22 6.87 -2.39 -0.02 1.20 16 15 C -0.18 -7.22 7.78 71.98 0.56 -6.66 16 16 C -0.50 -28.49 9.42 25.60 0.24 -28.25 16 17 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 18 C 0.01 0.69 5.45 84.65 0.46 1.15 16 19 N -0.95 -59.70 13.96 21.44 0.30 -59.40 16 20 Si 0.95 45.24 24.37 68.60 1.67 46.91 16 21 H -0.27 -12.21 6.87 99.48 0.68 -11.53 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 24 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.08 1.38 8.05 -2.39 -0.02 1.36 16 26 H 0.05 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.15 2.26 8.04 -2.91 -0.02 2.23 16 28 H 0.12 3.62 3.40 -2.91 -0.01 3.61 16 29 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 31 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.04 1.35 4.22 -2.39 -0.01 1.34 16 33 H 0.06 2.14 8.07 -2.38 -0.02 2.12 16 34 H 0.33 12.29 6.45 -89.69 -0.58 11.71 16 35 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 36 H 0.06 2.03 5.90 -2.39 -0.01 2.02 16 37 H 0.06 2.26 8.13 -2.38 -0.02 2.24 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -65.11 314.19 2.71 -62.40 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.42 Total: 20.95 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.43 Total: -40.20 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.72 Total: -88.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.67 Total: 46.91 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -65.11 2.71 -62.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494523.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.289 kcal (2) G-P(sol) polarization free energy of solvation -65.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds