Wall clock time and date at job start Tue Mar 31 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32576 * 120.00595 * 2 1 4 4 C 1.47805 * 119.99379 * 7.65413 * 3 2 1 5 5 C 1.39541 * 120.12799 * 213.20413 * 4 3 2 6 6 C 1.37945 * 119.87192 * 179.74353 * 5 4 3 7 7 C 1.38467 * 120.12621 * 0.51587 * 6 5 4 8 8 Cl 1.73602 * 119.87197 * 179.73963 * 7 6 5 9 9 C 1.38460 * 120.26052 * 359.75963 * 7 6 5 10 10 C 1.37950 * 120.12790 * 359.97438 * 9 7 6 11 11 C 1.50701 * 119.99826 * 179.97438 * 2 1 3 12 12 N 1.46902 * 109.47300 * 274.99874 * 11 2 1 13 13 C 1.46893 * 111.00168 * 180.02562 * 12 11 2 14 14 H 1.09003 * 109.47143 * 324.99637 * 13 12 11 15 15 C 1.53002 * 109.47463 * 85.00173 * 13 12 11 16 16 C 1.50701 * 109.47336 * 205.00073 * 13 12 11 17 17 H 1.08007 * 119.99610 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00396 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99630 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99955 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47252 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46987 * 119.99641 * 20 18 16 23 23 H 1.48498 * 109.47050 * 239.99401 * 20 18 16 24 24 H 1.09002 * 109.46970 * 266.55667 * 1 2 3 25 25 H 1.09001 * 109.46869 * 26.55507 * 1 2 3 26 26 H 1.08998 * 109.47383 * 146.54996 * 1 2 3 27 27 H 1.08003 * 120.00392 * 187.65953 * 3 2 1 28 28 H 1.07999 * 120.06555 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.94067 * 180.25445 * 6 5 4 30 30 H 1.08001 * 119.94150 * 179.97438 * 9 7 6 31 31 H 1.08001 * 120.06620 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.47407 * 155.00329 * 11 2 1 33 33 H 1.09001 * 109.47596 * 35.00446 * 11 2 1 34 34 H 1.00894 * 110.99665 * 56.04190 * 12 11 2 35 35 H 1.08999 * 109.47030 * 180.02562 * 15 13 12 36 36 H 1.08994 * 109.47273 * 59.99421 * 15 13 12 37 37 H 1.09000 * 109.46884 * 299.99865 * 15 13 12 38 38 H 0.96998 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 1.4408 2.4224 0.1705 5 6 1.8897 3.5775 -0.4710 6 6 1.2021 4.7628 -0.3124 7 6 0.0746 4.8102 0.4900 8 17 -0.7818 6.3069 0.6903 9 6 -0.3723 3.6686 1.1336 10 6 0.3041 2.4764 0.9781 11 6 2.2604 -1.3051 0.0006 12 7 2.4007 -1.7890 1.3805 13 6 3.1325 -3.0620 1.4202 14 1 2.8798 -3.6539 0.5404 15 6 4.6372 -2.7853 1.4339 16 6 2.7503 -3.8226 2.6638 17 1 2.0356 -3.4020 3.3557 18 6 3.3138 -5.0549 2.9188 19 7 4.1844 -5.5668 2.0765 20 14 2.8406 -5.9972 4.4607 21 1 1.8501 -5.2096 5.2378 22 1 2.2456 -7.3034 4.0795 23 1 4.0501 -6.2277 5.2908 24 1 -0.3633 -0.0617 1.0258 25 1 -0.3633 0.9193 -0.4594 26 1 -0.3634 -0.8574 -0.5664 27 1 3.2427 1.1522 -0.1247 28 1 2.7711 3.5425 -1.0941 29 1 1.5462 5.6565 -0.8117 30 1 -1.2520 3.7115 1.7586 31 1 -0.0456 1.5864 1.4803 32 1 3.2487 -1.1544 -0.4338 33 1 1.7131 -2.0410 -0.5886 34 1 1.4999 -1.8752 1.8268 35 1 5.1801 -3.7300 1.4629 36 1 4.8898 -2.1935 2.3136 37 1 4.9136 -2.2352 0.5344 38 1 4.5806 -6.4338 2.2557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:50 Heat of formation + Delta-G solvation = 25.208123 kcal Electronic energy + Delta-G solvation = -18494.495232 eV Core-core repulsion = 15555.534589 eV Total energy + Delta-G solvation = -2938.960644 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.62553 -37.13215 -36.42866 -34.73789 -32.36511 -31.36505 -30.38098 -28.28454 -27.20817 -25.37914 -24.24879 -22.77792 -21.77877 -19.81174 -18.53153 -16.99548 -16.51512 -15.73884 -15.52007 -14.94040 -14.37532 -14.22980 -14.05353 -13.74980 -13.54726 -13.24994 -12.93693 -12.54568 -12.25376 -11.95571 -11.64150 -11.60059 -11.37462 -11.36449 -11.05948 -10.91744 -10.79795 -10.63621 -10.28504 -10.15721 -9.94075 -9.48159 -9.16037 -8.85832 -8.51372 -8.02375 -7.31091 -6.05952 -4.12540 0.76957 1.17249 1.96878 2.39611 3.26549 3.34632 3.38655 3.62504 4.37846 4.63518 4.71766 4.74284 5.08759 5.14591 5.19629 5.25368 5.34342 5.50247 5.53576 5.68819 5.78090 5.87608 6.01497 6.03823 6.08794 6.12975 6.21305 6.35078 6.64933 6.78008 6.86249 7.03709 7.10814 7.19472 7.46084 7.74890 7.85815 8.23804 8.33947 8.62005 8.97903 9.53659 11.00422 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.002868 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.388887 B = 9759.622158 C =10156.940107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.030 4.030 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.044 4.044 8 Cl -0.081 7.081 9 C -0.111 4.111 10 C -0.105 4.105 11 C 0.092 3.908 12 N -0.680 5.680 13 C 0.211 3.789 14 H 0.001 0.999 15 C -0.125 4.125 16 C -0.518 4.518 17 H 0.060 0.940 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.897 3.103 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.283 1.283 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.142 0.858 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.331 0.669 35 H 0.081 0.919 36 H 0.032 0.968 37 H 0.004 0.996 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 18.402 -5.778 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.082 4.082 3 C -0.157 4.157 4 C -0.030 4.030 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.070 4.070 8 Cl -0.052 7.052 9 C -0.130 4.130 10 C -0.123 4.123 11 C -0.037 4.037 12 N -0.312 5.312 13 C 0.104 3.896 14 H 0.019 0.981 15 C -0.183 4.183 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.209 1.209 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.023 0.977 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.248 18.728 -5.658 20.864 hybrid contribution -0.825 -1.012 0.487 1.393 sum -8.073 17.716 -5.171 20.144 Atomic orbital electron populations 1.21223 0.92822 1.02419 1.02065 1.22218 0.95251 0.95171 0.95606 1.21362 0.99044 0.89936 1.05358 1.19228 0.94376 0.93873 0.95549 1.21260 1.00010 0.91419 0.99513 1.20941 0.94443 0.98868 0.98805 1.20964 0.96271 0.87448 1.02325 1.98358 1.76913 1.33368 1.96610 1.20999 1.00847 0.91229 0.99917 1.21679 0.94815 0.97802 0.97991 1.20949 0.98310 0.91635 0.92852 1.60790 1.23498 1.34008 1.12862 1.19136 0.91027 0.83302 0.96138 0.98131 1.21718 0.98813 1.01057 0.96712 1.21292 1.25150 1.02269 1.06957 0.92150 1.24924 0.94936 0.97386 0.96789 1.69904 1.28883 1.17984 1.36092 0.86462 0.78386 0.79634 0.83045 1.19724 1.21088 1.20948 0.90849 0.91319 0.91849 0.85931 0.85005 0.85194 0.85079 0.83997 0.91115 0.95527 0.85234 0.90071 0.94915 0.97733 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.19 36.00 0.29 -1.24 16 2 C -0.08 -1.16 5.51 -101.26 -0.56 -1.71 16 3 C -0.14 -1.84 9.42 -37.58 -0.35 -2.19 16 4 C -0.03 -0.36 5.21 -105.01 -0.55 -0.91 16 5 C -0.10 -1.09 9.78 -39.20 -0.38 -1.48 16 6 C -0.11 -1.12 9.81 -39.60 -0.39 -1.51 16 7 C -0.04 -0.46 6.32 -39.42 -0.25 -0.71 16 8 Cl -0.08 -0.79 28.95 -51.86 -1.50 -2.29 16 9 C -0.11 -1.17 9.81 -39.60 -0.39 -1.55 16 10 C -0.10 -1.19 7.59 -39.20 -0.30 -1.48 16 11 C 0.09 1.59 5.65 -4.97 -0.03 1.56 16 12 N -0.68 -14.14 6.29 -109.22 -0.69 -14.83 16 13 C 0.21 5.27 2.60 -68.87 -0.18 5.09 16 14 H 0.00 0.03 7.80 -51.93 -0.41 -0.38 16 15 C -0.12 -3.08 9.19 37.16 0.34 -2.74 16 16 C -0.52 -14.05 8.59 -34.44 -0.30 -14.34 16 17 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16 18 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 20 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.07 0.83 6.85 -51.93 -0.36 0.47 16 25 H 0.07 0.75 5.99 -51.93 -0.31 0.44 16 26 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 27 H 0.12 1.63 7.99 -52.48 -0.42 1.21 16 28 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 29 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 31 H 0.14 1.54 5.30 -52.49 -0.28 1.26 16 32 H 0.07 1.25 7.28 -51.93 -0.38 0.87 16 33 H 0.03 0.47 8.04 -51.93 -0.42 0.05 16 34 H 0.33 6.69 8.22 -39.29 -0.32 6.37 16 35 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 36 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 38 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -28.20 327.75 -10.01 -38.21 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.24 Total: 4.16 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -3.13 Total: -21.62 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: -0.06 Total: -39.44 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.20 -10.01 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.417 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds