Wall clock time and date at job start Tue Mar 31 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.32576 * 120.00595 * 2 1 4 4 C 1.47805 * 119.99379 * 7.65413 * 3 2 1 5 5 C 1.39541 * 120.12799 * 213.20413 * 4 3 2 6 6 C 1.37945 * 119.87192 * 179.74353 * 5 4 3 7 7 C 1.38467 * 120.12621 * 0.51587 * 6 5 4 8 8 Cl 1.73602 * 119.87197 * 179.73963 * 7 6 5 9 9 C 1.38460 * 120.26052 * 359.75963 * 7 6 5 10 10 C 1.37950 * 120.12790 * 359.97438 * 9 7 6 11 11 C 1.50701 * 119.99826 * 179.97438 * 2 1 3 12 12 N 1.46902 * 109.47300 * 274.99874 * 11 2 1 13 13 C 1.46893 * 111.00168 * 180.02562 * 12 11 2 14 14 H 1.09003 * 109.47143 * 324.99637 * 13 12 11 15 15 C 1.53002 * 109.47463 * 85.00173 * 13 12 11 16 16 C 1.50701 * 109.47336 * 205.00073 * 13 12 11 17 17 H 1.08007 * 119.99610 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00396 * 180.02562 * 16 13 12 19 19 N 1.31512 * 119.99630 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 119.99955 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47252 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46987 * 119.99641 * 20 18 16 23 23 H 1.48498 * 109.47050 * 239.99401 * 20 18 16 24 24 H 1.09002 * 109.46970 * 266.55667 * 1 2 3 25 25 H 1.09001 * 109.46869 * 26.55507 * 1 2 3 26 26 H 1.08998 * 109.47383 * 146.54996 * 1 2 3 27 27 H 1.08003 * 120.00392 * 187.65953 * 3 2 1 28 28 H 1.07999 * 120.06555 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.94067 * 180.25445 * 6 5 4 30 30 H 1.08001 * 119.94150 * 179.97438 * 9 7 6 31 31 H 1.08001 * 120.06620 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.47407 * 155.00329 * 11 2 1 33 33 H 1.09001 * 109.47596 * 35.00446 * 11 2 1 34 34 H 1.00894 * 110.99665 * 56.04190 * 12 11 2 35 35 H 1.08999 * 109.47030 * 180.02562 * 15 13 12 36 36 H 1.08994 * 109.47273 * 59.99421 * 15 13 12 37 37 H 1.09000 * 109.46884 * 299.99865 * 15 13 12 38 38 H 0.96998 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1699 1.1481 0.0000 4 6 1.4408 2.4224 0.1705 5 6 1.8897 3.5775 -0.4710 6 6 1.2021 4.7628 -0.3124 7 6 0.0746 4.8102 0.4900 8 17 -0.7818 6.3069 0.6903 9 6 -0.3723 3.6686 1.1336 10 6 0.3041 2.4764 0.9781 11 6 2.2604 -1.3051 0.0006 12 7 2.4007 -1.7890 1.3805 13 6 3.1325 -3.0620 1.4202 14 1 2.8798 -3.6539 0.5404 15 6 4.6372 -2.7853 1.4339 16 6 2.7503 -3.8226 2.6638 17 1 2.0356 -3.4020 3.3557 18 6 3.3138 -5.0549 2.9188 19 7 4.1844 -5.5668 2.0765 20 14 2.8406 -5.9972 4.4607 21 1 1.8501 -5.2096 5.2378 22 1 2.2456 -7.3034 4.0795 23 1 4.0501 -6.2277 5.2908 24 1 -0.3633 -0.0617 1.0258 25 1 -0.3633 0.9193 -0.4594 26 1 -0.3634 -0.8574 -0.5664 27 1 3.2427 1.1522 -0.1247 28 1 2.7711 3.5425 -1.0941 29 1 1.5462 5.6565 -0.8117 30 1 -1.2520 3.7115 1.7586 31 1 -0.0456 1.5864 1.4803 32 1 3.2487 -1.1544 -0.4338 33 1 1.7131 -2.0410 -0.5886 34 1 1.4999 -1.8752 1.8268 35 1 5.1801 -3.7300 1.4629 36 1 4.8898 -2.1935 2.3136 37 1 4.9136 -2.2352 0.5344 38 1 4.5806 -6.4338 2.2557 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:50 Heat of formation + Delta-G solvation = 11.012961 kcal Electronic energy + Delta-G solvation = -18495.110781 eV Core-core repulsion = 15555.534589 eV Total energy + Delta-G solvation = -2939.576192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48580 -38.38418 -37.45825 -36.18435 -34.16066 -32.17939 -31.61227 -29.84063 -28.25655 -27.35519 -25.72635 -23.58735 -22.76982 -21.73290 -19.66419 -18.44061 -17.78473 -16.96194 -16.64677 -16.46947 -15.75839 -15.51634 -15.25180 -14.81929 -14.75507 -14.51182 -14.17497 -13.78856 -13.54041 -13.30782 -12.94581 -12.82132 -12.71254 -12.60587 -12.46711 -12.39417 -12.22968 -12.14921 -12.07902 -11.71754 -11.49524 -10.89516 -10.59304 -10.41928 -9.96021 -9.11680 -8.93091 -8.13850 -6.28125 -0.12185 0.37423 1.17619 1.37043 1.41577 1.43803 1.55285 2.41712 2.77296 3.15014 3.66295 3.81909 3.87767 3.96782 4.11205 4.23545 4.37440 4.48463 4.56142 4.69637 4.74334 4.81869 4.84199 4.90278 5.06937 5.07998 5.09243 5.21450 5.24815 5.28615 5.42606 5.46781 5.66087 5.73645 5.84613 5.86283 5.97842 6.21945 6.46021 6.76064 6.99492 7.42526 8.91999 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034039 B = 0.002868 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.388887 B = 9759.622158 C =10156.940107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.098 4.098 3 C -0.124 4.124 4 C -0.049 4.049 5 C -0.103 4.103 6 C -0.113 4.113 7 C -0.048 4.048 8 Cl -0.075 7.075 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.096 3.904 12 N -0.678 5.678 13 C 0.215 3.785 14 H -0.030 1.030 15 C -0.114 4.114 16 C -0.536 4.536 17 H 0.060 0.940 18 C 0.012 3.988 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.280 1.280 23 H -0.281 1.281 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.334 0.666 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.022 0.978 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 19.902 -5.353 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.049 4.049 5 C -0.121 4.121 6 C -0.132 4.132 7 C -0.075 4.075 8 Cl -0.046 7.046 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.033 4.033 12 N -0.309 5.309 13 C 0.107 3.893 14 H -0.013 1.013 15 C -0.172 4.172 16 C -0.575 4.575 17 H 0.078 0.922 18 C -0.187 4.187 19 N -0.558 5.558 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.207 1.207 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.164 20.249 -5.240 22.453 hybrid contribution -0.535 -1.352 0.302 1.485 sum -8.699 18.897 -4.938 21.382 Atomic orbital electron populations 1.21181 0.91136 1.02944 1.02534 1.22013 0.96273 0.93598 0.98004 1.21461 0.99047 0.90492 1.03317 1.19217 0.95075 0.93639 0.97004 1.21465 1.00403 0.91036 0.99180 1.21181 0.94086 0.99395 0.98533 1.21156 0.96431 0.87772 1.02137 1.98363 1.76767 1.32878 1.96561 1.21173 1.01263 0.90917 1.00036 1.21748 0.94669 0.98303 0.97935 1.20898 0.98515 0.93219 0.90688 1.60685 1.23518 1.31437 1.15245 1.18932 0.91612 0.84568 0.94182 1.01255 1.21548 0.98519 0.99852 0.97316 1.21620 1.25267 1.02926 1.07664 0.92157 1.25742 0.94852 0.98338 0.99752 1.70029 1.29696 1.18353 1.37722 0.85432 0.78145 0.78249 0.79343 1.18938 1.20619 1.20684 0.90288 0.90169 0.91982 0.86249 0.83415 0.83273 0.83626 0.83783 0.91791 0.96110 0.84910 0.92457 0.95358 0.95919 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 8.19 71.23 0.58 -2.17 16 2 C -0.10 -2.71 5.51 -17.60 -0.10 -2.81 16 3 C -0.12 -3.17 9.42 23.65 0.22 -2.95 16 4 C -0.05 -1.09 5.21 -20.12 -0.10 -1.20 16 5 C -0.10 -1.94 9.78 22.51 0.22 -1.72 16 6 C -0.11 -1.99 9.81 22.25 0.22 -1.77 16 7 C -0.05 -0.91 6.32 22.38 0.14 -0.77 16 8 Cl -0.07 -1.29 28.95 -2.72 -0.08 -1.37 16 9 C -0.12 -2.18 9.81 22.25 0.22 -1.96 16 10 C -0.11 -2.26 7.59 22.52 0.17 -2.09 16 11 C 0.10 3.34 5.65 85.56 0.48 3.82 16 12 N -0.68 -28.33 6.29 -499.45 -3.14 -31.47 16 13 C 0.22 10.95 2.60 44.17 0.11 11.07 16 14 H -0.03 -1.69 7.80 -2.39 -0.02 -1.71 16 15 C -0.11 -5.71 9.19 71.98 0.66 -5.05 16 16 C -0.54 -29.31 8.59 25.60 0.22 -29.09 16 17 H 0.06 3.22 7.62 -2.91 -0.02 3.20 16 18 C 0.01 0.68 5.30 84.66 0.45 1.12 16 19 N -0.92 -52.82 11.32 21.45 0.24 -52.58 16 20 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 H 0.08 1.68 6.85 -2.39 -0.02 1.66 16 25 H 0.08 1.62 5.99 -2.39 -0.01 1.61 16 26 H 0.06 1.40 8.12 -2.39 -0.02 1.38 16 27 H 0.12 3.07 7.99 -2.91 -0.02 3.05 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.14 2.89 5.30 -2.91 -0.02 2.88 16 32 H 0.06 2.28 7.28 -2.38 -0.02 2.26 16 33 H 0.02 0.75 8.04 -2.39 -0.02 0.73 16 34 H 0.33 13.51 8.22 -89.70 -0.74 12.78 16 35 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 36 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -59.53 327.75 2.88 -56.66 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.33 Total: 19.15 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.50 Total: -35.57 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -2.90 Total: -84.04 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -59.53 2.88 -56.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.669 kcal (2) G-P(sol) polarization free energy of solvation -59.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds