Wall clock time and date at job start Tue Mar 31 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.66199 * 2 1 4 4 C 1.54592 * 110.74280 * 123.20037 * 2 1 3 5 5 N 1.47906 * 102.63578 * 143.94062 * 4 2 1 6 6 C 1.46899 * 110.99888 * 94.66774 * 5 4 2 7 7 C 1.52997 * 109.47202 * 170.00535 * 6 5 4 8 8 C 1.50706 * 109.47087 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00283 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99673 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99814 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47094 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47316 * 120.00232 * 12 10 8 15 15 H 1.48502 * 109.47198 * 240.00382 * 12 10 8 16 16 C 1.40116 * 107.90003 * 332.84386 * 5 4 2 17 17 C 1.39392 * 129.93625 * 198.06133 * 16 5 4 18 18 C 1.37905 * 120.21657 * 180.25948 * 17 16 5 19 19 C 1.38394 * 120.25371 * 0.03423 * 18 17 16 20 20 Cl 1.73608 * 120.07527 * 179.82545 * 19 18 17 21 21 C 1.38396 * 119.85660 * 359.84971 * 19 18 17 22 22 C 1.37929 * 120.06922 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46689 * 296.80298 * 1 2 3 24 24 H 1.09001 * 109.47161 * 56.80039 * 1 2 3 25 25 H 1.08998 * 109.46923 * 176.80377 * 1 2 3 26 26 H 1.08993 * 109.47816 * 183.20093 * 3 2 1 27 27 H 1.09000 * 109.47378 * 303.20119 * 3 2 1 28 28 H 1.09004 * 109.47220 * 63.20099 * 3 2 1 29 29 H 1.08996 * 110.78031 * 25.65881 * 4 2 1 30 30 H 1.09001 * 110.77852 * 262.22507 * 4 2 1 31 31 H 1.09000 * 109.47436 * 290.00341 * 6 5 4 32 32 H 1.09005 * 109.47376 * 50.00050 * 6 5 4 33 33 H 1.09005 * 109.46748 * 299.99741 * 7 6 5 34 34 H 1.08995 * 109.47543 * 60.00047 * 7 6 5 35 35 H 0.96996 * 120.00072 * 179.97438 * 11 10 8 36 36 H 1.08002 * 119.88751 * 0.28279 * 17 16 5 37 37 H 1.08003 * 119.87069 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.97271 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0776 -0.7916 1.2097 5 7 3.2833 -1.4419 0.6520 6 6 4.4849 -0.6402 0.9190 7 6 5.7302 -1.4509 0.5545 8 6 6.9630 -0.6287 0.8291 9 1 6.8678 0.3721 1.2236 10 6 8.2125 -1.1542 0.5765 11 7 8.3284 -2.3731 0.0965 12 14 9.7405 -0.1349 0.9161 13 1 9.3416 1.1927 1.4486 14 1 10.5903 -0.8338 1.9134 15 1 10.5044 0.0472 -0.3443 16 6 3.0855 -1.6067 -0.7254 17 6 3.7410 -2.4404 -1.6300 18 6 3.3825 -2.4377 -2.9616 19 6 2.3702 -1.6070 -3.4095 20 17 1.9257 -1.6041 -5.0877 21 6 1.7133 -0.7783 -2.5168 22 6 2.0671 -0.7799 -1.1836 23 1 -0.3633 0.4634 0.9173 24 1 -0.3633 0.5627 -0.8599 25 1 -0.3633 -1.0261 -0.0573 26 1 3.1581 1.4096 -0.0574 27 1 1.6716 1.9701 -0.8599 28 1 1.7646 1.9350 0.9173 29 1 1.3555 -1.5370 1.5429 30 1 2.3435 -0.1180 2.0244 31 1 4.4554 0.2696 0.3195 32 1 4.5189 -0.3776 1.9764 33 1 5.7598 -2.3607 1.1541 34 1 5.6963 -1.7135 -0.5028 35 1 9.2074 -2.7427 -0.0815 36 1 4.5319 -3.0908 -1.2868 37 1 3.8938 -3.0862 -3.6577 38 1 0.9227 -0.1297 -2.8642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654459876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:35 Heat of formation + Delta-G solvation = 18.497920 kcal Electronic energy + Delta-G solvation = -19821.821556 eV Core-core repulsion = 16882.569936 eV Total energy + Delta-G solvation = -2939.251620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.97681 -37.29483 -35.81415 -34.80781 -32.89789 -30.14782 -30.07087 -28.79305 -27.36823 -25.70966 -23.78789 -22.80186 -21.67747 -20.21085 -19.28230 -16.56363 -16.16147 -15.87514 -15.61138 -14.93181 -14.41113 -14.21385 -13.90068 -13.48303 -13.42480 -12.96147 -12.80845 -12.45918 -12.28469 -12.18973 -11.97350 -11.58241 -11.36085 -11.24348 -11.11649 -11.03169 -10.90853 -10.86270 -10.52121 -10.32664 -10.05698 -9.50517 -9.16447 -8.78244 -8.66870 -8.36181 -7.47774 -6.03718 -4.05969 1.39523 1.54715 2.29952 3.29033 3.36732 3.40007 3.79496 4.08957 4.44468 4.46414 4.79013 4.97087 5.08640 5.17493 5.33072 5.38055 5.46797 5.59166 5.68001 5.69702 5.77445 5.83531 5.90172 5.96197 6.05026 6.07892 6.18284 6.24108 6.40600 6.42799 6.49295 6.73346 6.78039 6.93188 7.31280 7.55733 7.68677 7.81833 8.00045 8.36597 9.00199 9.57801 11.07743 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.005545 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.692358 B = 5048.603432 C = 6206.908921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C -0.140 4.140 4 C 0.056 3.944 5 N -0.494 5.494 6 C 0.062 3.938 7 C 0.021 3.979 8 C -0.522 4.522 9 H 0.054 0.946 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.123 3.877 17 C -0.091 4.091 18 C -0.093 4.093 19 C -0.056 4.056 20 Cl -0.084 7.084 21 C -0.081 4.081 22 C -0.128 4.128 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.143 0.857 37 H 0.134 0.866 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.690 3.317 -3.637 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.072 4.072 5 N -0.210 5.210 6 C -0.062 4.062 7 C -0.016 4.016 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.026 3.974 17 C -0.110 4.110 18 C -0.112 4.112 19 C -0.083 4.083 20 Cl -0.056 7.056 21 C -0.100 4.100 22 C -0.131 4.131 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.474 2.720 -3.505 16.098 hybrid contribution 0.830 1.187 -0.392 1.501 sum -14.644 3.907 -3.897 15.649 Atomic orbital electron populations 1.21725 0.93258 1.02036 1.01780 1.20716 0.96184 0.95439 0.92765 1.21937 1.02067 0.93952 1.01754 1.23316 0.91641 0.96356 0.95860 1.60305 1.04500 1.47682 1.08527 1.22620 0.88816 0.94608 1.00109 1.19237 0.89227 0.95517 0.97624 1.21159 0.90958 1.00612 1.43318 0.92768 1.24965 0.99043 0.94968 0.95162 1.69963 1.23601 1.14881 1.44608 0.86553 0.83204 0.80397 0.77956 1.19781 1.20951 1.20995 1.19650 0.94420 0.93830 0.89519 1.20728 1.00069 0.99098 0.91153 1.20808 0.96034 0.98687 0.95700 1.20578 1.00586 1.02530 0.84622 1.98332 1.92453 1.98099 1.16677 1.20019 1.00003 0.98888 0.91106 1.20774 1.00510 0.98204 0.93581 0.92215 0.92548 0.92318 0.91593 0.92478 0.92090 0.89770 0.89801 0.94815 0.91339 0.95701 0.95648 0.92995 0.83923 0.84839 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.46 37.16 0.31 -1.02 16 2 C -0.05 -0.64 0.95 -154.39 -0.15 -0.79 16 3 C -0.14 -1.75 8.48 37.15 0.32 -1.43 16 4 C 0.06 0.78 6.09 -2.43 -0.01 0.77 16 5 N -0.49 -8.90 5.06 -169.01 -0.85 -9.76 16 6 C 0.06 1.27 4.54 -3.83 -0.02 1.25 16 7 C 0.02 0.54 4.84 -27.88 -0.13 0.40 16 8 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 9 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 12 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.12 2.19 5.29 -83.37 -0.44 1.75 16 17 C -0.09 -1.62 8.55 -39.27 -0.34 -1.96 16 18 C -0.09 -1.46 9.81 -39.65 -0.39 -1.85 16 19 C -0.06 -0.83 6.32 -39.47 -0.25 -1.08 16 20 Cl -0.08 -1.10 28.96 -51.86 -1.50 -2.60 16 21 C -0.08 -1.16 9.67 -39.64 -0.38 -1.54 16 22 C -0.13 -1.95 5.01 -104.04 -0.52 -2.47 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.98 5.74 -51.93 -0.30 0.68 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.09 7.92 -51.93 -0.41 0.67 16 30 H 0.08 1.09 7.37 -51.93 -0.38 0.70 16 31 H 0.03 0.69 5.76 -51.93 -0.30 0.39 16 32 H 0.07 1.35 7.84 -51.93 -0.41 0.95 16 33 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.67 5.55 -51.93 -0.29 0.38 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.14 2.75 7.14 -52.49 -0.37 2.38 16 37 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -29.21 319.09 -9.63 -38.84 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.39 Total: -0.96 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.42 Total: -21.16 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.12 Total: -35.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.21 -9.63 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654459876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.340 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds