Wall clock time and date at job start Tue Mar 31 2020 00:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.66199 * 2 1 4 4 C 1.54592 * 110.74280 * 123.20037 * 2 1 3 5 5 N 1.47906 * 102.63578 * 143.94062 * 4 2 1 6 6 C 1.46899 * 110.99888 * 94.66774 * 5 4 2 7 7 C 1.52997 * 109.47202 * 170.00535 * 6 5 4 8 8 C 1.50706 * 109.47087 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00283 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99673 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99814 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47094 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47316 * 120.00232 * 12 10 8 15 15 H 1.48502 * 109.47198 * 240.00382 * 12 10 8 16 16 C 1.40116 * 107.90003 * 332.84386 * 5 4 2 17 17 C 1.39392 * 129.93625 * 198.06133 * 16 5 4 18 18 C 1.37905 * 120.21657 * 180.25948 * 17 16 5 19 19 C 1.38394 * 120.25371 * 0.03423 * 18 17 16 20 20 Cl 1.73608 * 120.07527 * 179.82545 * 19 18 17 21 21 C 1.38396 * 119.85660 * 359.84971 * 19 18 17 22 22 C 1.37929 * 120.06922 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.46689 * 296.80298 * 1 2 3 24 24 H 1.09001 * 109.47161 * 56.80039 * 1 2 3 25 25 H 1.08998 * 109.46923 * 176.80377 * 1 2 3 26 26 H 1.08993 * 109.47816 * 183.20093 * 3 2 1 27 27 H 1.09000 * 109.47378 * 303.20119 * 3 2 1 28 28 H 1.09004 * 109.47220 * 63.20099 * 3 2 1 29 29 H 1.08996 * 110.78031 * 25.65881 * 4 2 1 30 30 H 1.09001 * 110.77852 * 262.22507 * 4 2 1 31 31 H 1.09000 * 109.47436 * 290.00341 * 6 5 4 32 32 H 1.09005 * 109.47376 * 50.00050 * 6 5 4 33 33 H 1.09005 * 109.46748 * 299.99741 * 7 6 5 34 34 H 1.08995 * 109.47543 * 60.00047 * 7 6 5 35 35 H 0.96996 * 120.00072 * 179.97438 * 11 10 8 36 36 H 1.08002 * 119.88751 * 0.28279 * 17 16 5 37 37 H 1.08003 * 119.87069 * 180.02562 * 18 17 16 38 38 H 1.08001 * 119.97271 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4315 0.0000 4 6 2.0776 -0.7916 1.2097 5 7 3.2833 -1.4419 0.6520 6 6 4.4849 -0.6402 0.9190 7 6 5.7302 -1.4509 0.5545 8 6 6.9630 -0.6287 0.8291 9 1 6.8678 0.3721 1.2236 10 6 8.2125 -1.1542 0.5765 11 7 8.3284 -2.3731 0.0965 12 14 9.7405 -0.1349 0.9161 13 1 9.3416 1.1927 1.4486 14 1 10.5903 -0.8338 1.9134 15 1 10.5044 0.0472 -0.3443 16 6 3.0855 -1.6067 -0.7254 17 6 3.7410 -2.4404 -1.6300 18 6 3.3825 -2.4377 -2.9616 19 6 2.3702 -1.6070 -3.4095 20 17 1.9257 -1.6041 -5.0877 21 6 1.7133 -0.7783 -2.5168 22 6 2.0671 -0.7799 -1.1836 23 1 -0.3633 0.4634 0.9173 24 1 -0.3633 0.5627 -0.8599 25 1 -0.3633 -1.0261 -0.0573 26 1 3.1581 1.4096 -0.0574 27 1 1.6716 1.9701 -0.8599 28 1 1.7646 1.9350 0.9173 29 1 1.3555 -1.5370 1.5429 30 1 2.3435 -0.1180 2.0244 31 1 4.4554 0.2696 0.3195 32 1 4.5189 -0.3776 1.9764 33 1 5.7598 -2.3607 1.1541 34 1 5.6963 -1.7135 -0.5028 35 1 9.2074 -2.7427 -0.0815 36 1 4.5319 -3.0908 -1.2868 37 1 3.8938 -3.0862 -3.6577 38 1 0.9227 -0.1297 -2.8642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654459876.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:34 Heat of formation + Delta-G solvation = 3.099479 kcal Electronic energy + Delta-G solvation = -19822.489282 eV Core-core repulsion = 16882.569936 eV Total energy + Delta-G solvation = -2939.919347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.20559 -38.49679 -36.98578 -36.25136 -34.78796 -31.87481 -31.29102 -30.14265 -28.27992 -27.29423 -25.30761 -24.01597 -23.31680 -21.69702 -20.42792 -18.55101 -17.48348 -17.13700 -16.94006 -16.50386 -16.09935 -15.54779 -15.09258 -14.74733 -14.56982 -14.28937 -14.17519 -13.97099 -13.62813 -13.29507 -13.21582 -13.00054 -12.92512 -12.67044 -12.40312 -12.36006 -12.30231 -12.11803 -11.97801 -11.74276 -11.49643 -11.28075 -11.22791 -10.56754 -10.11117 -9.88370 -8.79511 -8.20521 -6.31218 0.13119 0.30094 1.12645 1.39293 1.39542 1.52377 2.38254 2.53071 2.85394 3.13586 3.38515 3.68902 3.93998 3.97350 4.11716 4.19968 4.32378 4.40084 4.46503 4.55229 4.67037 4.77991 4.79724 4.87819 4.90476 4.99109 5.01301 5.11432 5.13214 5.23759 5.26606 5.40009 5.45335 5.52056 5.57080 5.70404 5.78467 6.07156 6.19715 6.33429 6.85072 7.37477 8.91705 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.005545 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.692358 B = 5048.603432 C = 6206.908921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.045 4.045 3 C -0.137 4.137 4 C 0.053 3.947 5 N -0.511 5.511 6 C 0.081 3.919 7 C 0.029 3.971 8 C -0.541 4.541 9 H 0.060 0.940 10 C 0.004 3.996 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.261 1.261 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.093 3.907 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.054 4.054 20 Cl -0.064 7.064 21 C -0.077 4.077 22 C -0.122 4.122 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.033 0.967 32 H 0.074 0.926 33 H -0.010 1.010 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.426 5.469 -3.776 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.074 4.074 5 N -0.228 5.228 6 C -0.043 4.043 7 C -0.008 4.008 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.787 3.213 13 H -0.185 1.185 14 H -0.203 1.203 15 H -0.205 1.205 16 C -0.004 4.004 17 C -0.134 4.134 18 C -0.118 4.118 19 C -0.081 4.081 20 Cl -0.035 7.035 21 C -0.096 4.096 22 C -0.125 4.125 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.008 0.992 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.235 4.876 -3.646 18.279 hybrid contribution 1.322 0.462 -0.425 1.464 sum -15.913 5.337 -4.071 17.271 Atomic orbital electron populations 1.21701 0.90554 1.02437 1.03495 1.20770 0.98151 0.95020 0.90644 1.21920 1.00088 0.93884 1.03550 1.23491 0.90170 0.97028 0.96675 1.60177 1.05087 1.48163 1.09364 1.22214 0.88210 0.93746 1.00133 1.19054 0.91483 0.94597 0.95701 1.21594 0.92143 1.01067 1.43180 0.92211 1.25906 1.02581 0.96112 0.94819 1.70105 1.24509 1.16696 1.45635 0.85435 0.78839 0.79080 0.77921 1.18492 1.20330 1.20537 1.19808 0.95902 0.95119 0.89538 1.20647 1.00307 0.99861 0.92631 1.20894 0.96653 0.99315 0.94929 1.20679 0.99846 1.01798 0.85826 1.98339 1.92165 1.98001 1.14979 1.20329 1.00126 0.98606 0.90550 1.21095 0.99274 0.97405 0.94700 0.90160 0.91277 0.92541 0.94537 0.91200 0.89882 0.88487 0.88593 0.94917 0.90769 0.99199 0.97661 0.92820 0.87050 0.83844 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.07 8.46 71.98 0.61 -1.46 16 2 C -0.04 -1.05 0.95 -52.11 -0.05 -1.09 16 3 C -0.14 -3.06 8.48 71.98 0.61 -2.45 16 4 C 0.05 1.40 6.09 86.65 0.53 1.93 16 5 N -0.51 -18.79 5.06 -688.61 -3.48 -22.28 16 6 C 0.08 3.43 4.54 86.30 0.39 3.82 16 7 C 0.03 1.55 4.84 29.85 0.14 1.70 16 8 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 9 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 10 C 0.00 0.23 5.46 84.66 0.46 0.69 16 11 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 12 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 13 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 C 0.09 3.39 5.29 38.27 0.20 3.59 16 17 C -0.11 -4.36 8.55 22.47 0.19 -4.17 16 18 C -0.10 -3.18 9.81 22.23 0.22 -2.96 16 19 C -0.05 -1.54 6.32 22.34 0.14 -1.40 16 20 Cl -0.06 -1.54 28.96 -2.72 -0.08 -1.62 16 21 C -0.08 -2.05 9.67 22.23 0.21 -1.83 16 22 C -0.12 -3.57 5.01 -19.49 -0.10 -3.67 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 1.03 5.74 -2.39 -0.01 1.02 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.10 2.32 7.92 -2.39 -0.02 2.30 16 30 H 0.10 2.30 7.37 -2.39 -0.02 2.28 16 31 H 0.03 1.37 5.76 -2.39 -0.01 1.36 16 32 H 0.07 2.97 7.84 -2.38 -0.02 2.95 16 33 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 34 H 0.01 0.29 5.55 -2.39 -0.01 0.28 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.11 4.82 7.14 -2.91 -0.02 4.80 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 38 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -64.99 319.09 3.60 -61.39 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.05 Total: 10.55 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 3.80 Total: -37.93 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -3.20 Total: -78.77 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -64.99 3.60 -61.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654459876.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.494 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds