Wall clock time and date at job start Tue Mar 31 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.69231 * 2 1 4 4 C 1.54595 * 110.78432 * 236.70505 * 2 1 3 5 5 C 1.51575 * 102.84589 * 267.26351 * 4 2 1 6 6 C 1.37923 * 131.54469 * 164.02034 * 5 4 2 7 7 C 1.38399 * 120.07075 * 180.24571 * 6 5 4 8 8 Cl 1.73599 * 120.06931 * 180.02562 * 7 6 5 9 9 C 1.38396 * 119.85535 * 0.02562 * 7 6 5 10 10 C 1.37917 * 120.25332 * 359.85538 * 9 7 6 11 11 C 1.38951 * 107.96044 * 344.03240 * 5 4 2 12 12 N 1.40115 * 110.94759 * 359.23570 * 11 5 4 13 13 C 1.46895 * 111.00491 * 140.20510 * 12 11 5 14 14 C 1.52996 * 109.47167 * 173.85557 * 13 12 11 15 15 C 1.53008 * 109.47276 * 174.93934 * 14 13 12 16 16 C 1.50697 * 109.47202 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99861 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46867 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46858 * 119.99548 * 20 18 16 23 23 H 1.48493 * 109.46987 * 239.99508 * 20 18 16 24 24 H 1.09003 * 109.47130 * 188.66628 * 1 2 3 25 25 H 1.09002 * 109.47557 * 308.67181 * 1 2 3 26 26 H 1.09002 * 109.47076 * 68.67503 * 1 2 3 27 27 H 1.09003 * 110.73076 * 25.59882 * 4 2 1 28 28 H 1.09003 * 110.73958 * 148.73655 * 4 2 1 29 29 H 1.07999 * 119.96437 * 0.26372 * 6 5 4 30 30 H 1.08004 * 119.87242 * 179.87653 * 9 7 6 31 31 H 1.07991 * 119.89301 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46955 * 293.85258 * 13 12 11 33 33 H 1.09002 * 109.47193 * 53.85074 * 13 12 11 34 34 H 1.09000 * 109.47437 * 294.93576 * 14 13 12 35 35 H 1.08998 * 109.47318 * 54.94208 * 14 13 12 36 36 H 1.09000 * 109.46594 * 300.00157 * 15 14 13 37 37 H 1.09001 * 109.46585 * 59.99418 * 15 14 13 38 38 H 0.97004 * 119.99734 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0785 -0.7934 -1.2081 5 6 2.2641 -2.1865 -0.6402 6 6 2.4441 -3.4082 -1.2544 7 6 2.5869 -4.5538 -0.4911 8 17 2.8142 -6.0914 -1.2643 9 6 2.5481 -4.4708 0.8898 10 6 2.3706 -3.2508 1.5079 11 6 2.2290 -2.0924 0.7457 12 7 2.0546 -0.7632 1.1533 13 6 1.1401 -0.6797 2.2998 14 6 1.0939 0.7614 2.8115 15 6 0.0484 0.8748 3.9228 16 6 0.0034 2.2942 4.4272 17 1 0.6556 3.0406 3.9983 18 6 -0.8697 2.6396 5.4369 19 7 -1.6635 1.7304 5.9595 20 14 -0.9250 4.3988 6.0627 21 1 0.0605 5.2211 5.3157 22 1 -2.2877 4.9534 5.8604 23 1 -0.5916 4.4202 7.5095 24 1 -0.3633 -1.0160 0.1549 25 1 -0.3634 0.6421 0.8023 26 1 -0.3633 0.3737 -0.9573 27 1 1.3559 -0.8024 -2.0241 28 1 3.0301 -0.3796 -1.5417 29 1 2.4740 -3.4709 -2.3322 30 1 2.6575 -5.3650 1.4857 31 1 2.3416 -3.1927 2.5859 32 1 0.1412 -0.9878 1.9910 33 1 1.4933 -1.3365 3.0949 34 1 2.0723 1.0394 3.2034 35 1 0.8274 1.4294 1.9924 36 1 -0.9299 0.5969 3.5309 37 1 0.3149 0.2068 4.7418 38 1 -2.2779 1.9736 6.6696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655145503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:41 Heat of formation + Delta-G solvation = 14.239920 kcal Electronic energy + Delta-G solvation = -19160.163638 eV Core-core repulsion = 16220.727378 eV Total energy + Delta-G solvation = -2939.436261 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05955 -37.71161 -36.21823 -34.30650 -32.83499 -31.48785 -30.53182 -29.13672 -26.71277 -26.12304 -23.29193 -22.28849 -21.57615 -20.75894 -19.36582 -16.93212 -16.28733 -16.20235 -15.91586 -15.21805 -14.90311 -14.50384 -14.09553 -13.77115 -13.31901 -13.10260 -12.83852 -12.46403 -12.38108 -12.13611 -11.87671 -11.63816 -11.50186 -11.36719 -11.22550 -11.04777 -10.86241 -10.78251 -10.61760 -10.53209 -9.78743 -9.56872 -9.40402 -9.09224 -8.98263 -8.38623 -7.62365 -6.03571 -4.05950 1.12864 1.20921 2.07800 3.28763 3.36527 3.40347 3.44327 3.84739 4.40169 4.45294 4.55942 4.81839 4.92561 5.09412 5.14922 5.32365 5.32788 5.39056 5.50710 5.60740 5.64573 5.73403 5.77943 5.82287 5.97724 6.04853 6.13534 6.19064 6.24533 6.35001 6.50777 6.59407 6.72270 6.99018 7.13060 7.26220 7.63139 7.75403 7.96034 8.38561 9.01231 9.58555 11.07775 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.003297 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.639544 B = 8490.615593 C = 8970.765127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.075 3.925 3 H 0.105 0.895 4 C -0.079 4.079 5 C -0.137 4.137 6 C -0.071 4.071 7 C -0.069 4.069 8 Cl -0.081 7.081 9 C -0.081 4.081 10 C -0.132 4.132 11 C 0.118 3.882 12 N -0.469 5.469 13 C 0.043 3.957 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.436 -11.026 -15.275 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.031 4.031 3 H 0.123 0.877 4 C -0.116 4.116 5 C -0.140 4.140 6 C -0.090 4.090 7 C -0.097 4.097 8 Cl -0.052 7.052 9 C -0.100 4.100 10 C -0.153 4.153 11 C 0.018 3.982 12 N -0.181 5.181 13 C -0.082 4.082 14 C -0.146 4.146 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.772 -10.850 -14.993 20.073 hybrid contribution -0.651 0.462 0.266 0.841 sum 7.121 -10.388 -14.727 19.378 Atomic orbital electron populations 1.22444 0.94957 1.02860 1.03489 1.22791 0.94459 0.98652 0.87169 0.87678 1.21411 1.01951 0.90433 0.97813 1.20412 1.05191 0.94719 0.93700 1.20127 0.99474 0.89653 0.99727 1.20530 1.09956 0.86419 0.92794 1.98343 1.95808 1.29544 1.81522 1.20733 0.99019 0.97947 0.92351 1.20468 1.04912 0.89825 1.00132 1.19916 0.95392 0.89657 0.93245 1.60727 1.44301 1.05529 1.07574 1.22642 0.93767 1.01168 0.90646 1.21741 1.01348 0.91826 0.99675 1.19067 0.92960 0.97087 0.92368 1.21255 1.20663 0.95089 1.18724 0.92608 1.25025 0.95596 0.97271 0.96573 1.69975 1.23567 1.33212 1.26708 0.86548 0.77821 0.85005 0.78719 1.19715 1.21024 1.21002 0.92481 0.89875 0.91643 0.89923 0.89440 0.85387 0.84869 0.84975 0.92852 0.90717 0.92579 0.92789 0.96697 0.96581 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 7.72 37.15 0.29 -2.02 16 2 C 0.08 0.96 3.02 -66.32 -0.20 0.76 16 3 H 0.11 1.31 8.05 -51.93 -0.42 0.89 16 4 C -0.08 -0.85 6.57 -26.61 -0.17 -1.02 16 5 C -0.14 -1.70 6.23 -104.04 -0.65 -2.35 16 6 C -0.07 -0.81 9.82 -39.64 -0.39 -1.20 16 7 C -0.07 -0.80 6.32 -39.46 -0.25 -1.05 16 8 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.35 16 9 C -0.08 -0.94 9.81 -39.64 -0.39 -1.33 16 10 C -0.13 -1.71 9.51 -39.27 -0.37 -2.08 16 11 C 0.12 1.65 5.86 -83.38 -0.49 1.16 16 12 N -0.47 -6.98 5.04 -161.57 -0.81 -7.80 16 13 C 0.04 0.71 4.23 -3.83 -0.02 0.69 16 14 C -0.11 -2.13 4.76 -26.73 -0.13 -2.26 16 15 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H 0.06 0.77 7.27 -51.93 -0.38 0.39 16 25 H 0.08 1.24 5.74 -51.93 -0.30 0.95 16 26 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 31 H 0.13 1.62 7.24 -52.49 -0.38 1.24 16 32 H 0.05 0.90 5.89 -51.93 -0.31 0.59 16 33 H 0.07 1.24 7.03 -51.93 -0.37 0.88 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 1.03 5.86 -51.93 -0.30 0.72 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -29.42 319.34 -10.46 -39.88 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.36 Total: -1.64 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -3.32 Total: -23.48 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: -0.08 Total: -33.62 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.42 -10.46 -39.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655145503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.124 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds