Wall clock time and date at job start Tue Mar 31 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 110.69231 * 2 1 4 4 C 1.54595 * 110.78432 * 236.70505 * 2 1 3 5 5 C 1.51575 * 102.84589 * 267.26351 * 4 2 1 6 6 C 1.37923 * 131.54469 * 164.02034 * 5 4 2 7 7 C 1.38399 * 120.07075 * 180.24571 * 6 5 4 8 8 Cl 1.73599 * 120.06931 * 180.02562 * 7 6 5 9 9 C 1.38396 * 119.85535 * 0.02562 * 7 6 5 10 10 C 1.37917 * 120.25332 * 359.85538 * 9 7 6 11 11 C 1.38951 * 107.96044 * 344.03240 * 5 4 2 12 12 N 1.40115 * 110.94759 * 359.23570 * 11 5 4 13 13 C 1.46895 * 111.00491 * 140.20510 * 12 11 5 14 14 C 1.52996 * 109.47167 * 173.85557 * 13 12 11 15 15 C 1.53008 * 109.47276 * 174.93934 * 14 13 12 16 16 C 1.50697 * 109.47202 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99861 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00030 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46867 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46858 * 119.99548 * 20 18 16 23 23 H 1.48493 * 109.46987 * 239.99508 * 20 18 16 24 24 H 1.09003 * 109.47130 * 188.66628 * 1 2 3 25 25 H 1.09002 * 109.47557 * 308.67181 * 1 2 3 26 26 H 1.09002 * 109.47076 * 68.67503 * 1 2 3 27 27 H 1.09003 * 110.73076 * 25.59882 * 4 2 1 28 28 H 1.09003 * 110.73958 * 148.73655 * 4 2 1 29 29 H 1.07999 * 119.96437 * 0.26372 * 6 5 4 30 30 H 1.08004 * 119.87242 * 179.87653 * 9 7 6 31 31 H 1.07991 * 119.89301 * 180.02562 * 10 9 7 32 32 H 1.09004 * 109.46955 * 293.85258 * 13 12 11 33 33 H 1.09002 * 109.47193 * 53.85074 * 13 12 11 34 34 H 1.09000 * 109.47437 * 294.93576 * 14 13 12 35 35 H 1.08998 * 109.47318 * 54.94208 * 14 13 12 36 36 H 1.09000 * 109.46594 * 300.00157 * 15 14 13 37 37 H 1.09001 * 109.46585 * 59.99418 * 15 14 13 38 38 H 0.97004 * 119.99734 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0785 -0.7934 -1.2081 5 6 2.2641 -2.1865 -0.6402 6 6 2.4441 -3.4082 -1.2544 7 6 2.5869 -4.5538 -0.4911 8 17 2.8142 -6.0914 -1.2643 9 6 2.5481 -4.4708 0.8898 10 6 2.3706 -3.2508 1.5079 11 6 2.2290 -2.0924 0.7457 12 7 2.0546 -0.7632 1.1533 13 6 1.1401 -0.6797 2.2998 14 6 1.0939 0.7614 2.8115 15 6 0.0484 0.8748 3.9228 16 6 0.0034 2.2942 4.4272 17 1 0.6556 3.0406 3.9983 18 6 -0.8697 2.6396 5.4369 19 7 -1.6635 1.7304 5.9595 20 14 -0.9250 4.3988 6.0627 21 1 0.0605 5.2211 5.3157 22 1 -2.2877 4.9534 5.8604 23 1 -0.5916 4.4202 7.5095 24 1 -0.3633 -1.0160 0.1549 25 1 -0.3634 0.6421 0.8023 26 1 -0.3633 0.3737 -0.9573 27 1 1.3559 -0.8024 -2.0241 28 1 3.0301 -0.3796 -1.5417 29 1 2.4740 -3.4709 -2.3322 30 1 2.6575 -5.3650 1.4857 31 1 2.3416 -3.1927 2.5859 32 1 0.1412 -0.9878 1.9910 33 1 1.4933 -1.3365 3.0949 34 1 2.0723 1.0394 3.2034 35 1 0.8274 1.4294 1.9924 36 1 -0.9299 0.5969 3.5309 37 1 0.3149 0.2068 4.7418 38 1 -2.2779 1.9736 6.6696 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655145503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:40 Heat of formation + Delta-G solvation = -0.710163 kcal Electronic energy + Delta-G solvation = -19160.811923 eV Core-core repulsion = 16220.727378 eV Total energy + Delta-G solvation = -2940.084545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07238 -38.70565 -37.17062 -35.96587 -34.37483 -32.91935 -31.59046 -30.39367 -28.00294 -27.48234 -24.94280 -23.27616 -22.71835 -22.16571 -20.64042 -18.51269 -17.77686 -17.28069 -16.96676 -16.47834 -16.22131 -16.15513 -15.15250 -14.91315 -14.49295 -14.25292 -14.04191 -13.97227 -13.72499 -13.38399 -13.07811 -12.95880 -12.79322 -12.69381 -12.45792 -12.41080 -12.23113 -12.11388 -12.02399 -11.66904 -11.50034 -11.35133 -11.16155 -10.60405 -10.55939 -9.89027 -8.66008 -8.20507 -6.31168 0.16286 0.28871 1.18708 1.39862 1.40576 1.53607 2.39749 2.46997 2.83312 3.13127 3.46865 3.60121 3.93266 3.94965 4.07426 4.18280 4.23247 4.34237 4.38676 4.40532 4.59468 4.67875 4.77234 4.83883 4.92114 4.93643 4.95360 5.09093 5.15926 5.17290 5.24397 5.26574 5.40009 5.53610 5.59729 5.72327 5.85588 5.94916 6.14956 6.26025 6.85732 7.38259 8.91481 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.003297 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.639544 B = 8490.615593 C = 8970.765127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.069 3.931 3 H 0.108 0.892 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.071 4.071 7 C -0.071 4.071 8 Cl -0.069 7.069 9 C -0.084 4.084 10 C -0.144 4.144 11 C 0.090 3.910 12 N -0.478 5.478 13 C 0.057 3.943 14 C -0.090 4.090 15 C 0.028 3.972 16 C -0.540 4.540 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.963 3.037 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.279 1.279 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.062 0.938 36 H -0.007 1.007 37 H -0.010 1.010 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.189 -10.756 -17.054 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 H 0.126 0.874 4 C -0.107 4.107 5 C -0.141 4.141 6 C -0.090 4.090 7 C -0.099 4.099 8 Cl -0.040 7.040 9 C -0.103 4.103 10 C -0.165 4.165 11 C -0.009 4.009 12 N -0.191 5.191 13 C -0.068 4.068 14 C -0.128 4.128 15 C -0.009 4.009 16 C -0.578 4.578 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.205 1.205 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.541 -10.594 -16.793 21.614 hybrid contribution -0.881 0.267 0.783 1.209 sum 7.661 -10.327 -16.009 20.534 Atomic orbital electron populations 1.22360 0.95230 1.01698 1.03788 1.22930 0.94272 0.98989 0.87507 0.87381 1.21431 1.03146 0.88886 0.97231 1.20638 1.04557 0.95833 0.93057 1.20372 0.98668 0.89079 1.00882 1.20699 1.09143 0.87126 0.92924 1.98350 1.95689 1.28740 1.81240 1.20921 0.98525 0.98025 0.92802 1.20605 1.05272 0.90333 1.00262 1.20076 0.97107 0.89343 0.94377 1.60703 1.43967 1.06771 1.07625 1.22290 0.94191 0.98656 0.91687 1.21449 0.98973 0.94274 0.98096 1.18939 0.93435 0.95469 0.93095 1.21689 1.20734 0.96305 1.19036 0.92226 1.25960 0.95131 1.01894 0.96802 1.70103 1.24339 1.35550 1.27343 0.85425 0.78194 0.79488 0.78114 1.18556 1.20332 1.20511 0.93429 0.92600 0.89127 0.87675 0.87997 0.83170 0.83202 0.85215 0.93423 0.91288 0.93202 0.91985 0.98850 0.99191 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.31 7.72 71.98 0.56 -3.75 16 2 C 0.07 1.67 3.02 45.26 0.14 1.81 16 3 H 0.11 2.54 8.05 -2.39 -0.02 2.52 16 4 C -0.07 -1.32 6.57 30.67 0.20 -1.12 16 5 C -0.14 -3.15 6.23 -19.49 -0.12 -3.27 16 6 C -0.07 -1.45 9.82 22.23 0.22 -1.23 16 7 C -0.07 -1.51 6.32 22.35 0.14 -1.37 16 8 Cl -0.07 -1.29 28.96 -2.72 -0.08 -1.37 16 9 C -0.08 -1.84 9.81 22.23 0.22 -1.62 16 10 C -0.14 -3.68 9.51 22.47 0.21 -3.46 16 11 C 0.09 2.46 5.86 38.27 0.22 2.69 16 12 N -0.48 -14.08 5.04 -665.07 -3.35 -17.43 16 13 C 0.06 1.97 4.23 86.30 0.36 2.33 16 14 C -0.09 -3.65 4.76 30.60 0.15 -3.50 16 15 C 0.03 1.47 4.97 29.85 0.15 1.62 16 16 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 20 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H 0.05 1.26 7.27 -2.39 -0.02 1.24 16 25 H 0.06 1.69 5.74 -2.39 -0.01 1.68 16 26 H 0.09 1.75 8.10 -2.39 -0.02 1.73 16 27 H 0.10 1.53 7.89 -2.39 -0.02 1.51 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.13 3.26 7.24 -2.92 -0.02 3.24 16 32 H 0.05 1.67 5.89 -2.38 -0.01 1.66 16 33 H 0.07 2.40 7.03 -2.39 -0.02 2.38 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.06 2.39 5.86 -2.39 -0.01 2.38 16 36 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -63.44 319.34 3.07 -60.36 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.05 Total: 9.30 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.14 Total: -40.67 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.07 Total: -73.67 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -63.44 3.07 -60.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655145503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.653 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds