Wall clock time and date at job start Tue Mar 31 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.69442 * 2 1 4 4 C 1.54601 * 110.94443 * 123.41296 * 2 1 3 5 5 C 1.51574 * 102.83055 * 143.96574 * 4 2 1 6 6 C 1.37926 * 131.54784 * 163.77818 * 5 4 2 7 7 C 1.38395 * 120.06672 * 180.30042 * 6 5 4 8 8 Cl 1.73601 * 120.06738 * 179.97438 * 7 6 5 9 9 C 1.38400 * 119.85865 * 359.97438 * 7 6 5 10 10 C 1.37904 * 120.25062 * 359.87779 * 9 7 6 11 11 C 1.38955 * 107.95323 * 343.79554 * 5 4 2 12 12 N 1.40109 * 110.95908 * 359.57157 * 11 5 4 13 13 C 1.46894 * 110.99913 * 256.26484 * 12 11 5 14 14 C 1.52997 * 109.47515 * 290.00205 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00489 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00464 * 20 18 16 24 24 H 1.08998 * 109.47644 * 183.28960 * 1 2 3 25 25 H 1.09007 * 109.46809 * 303.28293 * 1 2 3 26 26 H 1.09002 * 109.47296 * 63.28118 * 1 2 3 27 27 H 1.08997 * 110.73539 * 262.30114 * 4 2 1 28 28 H 1.09005 * 110.73890 * 25.63066 * 4 2 1 29 29 H 1.07996 * 119.96438 * 0.27729 * 6 5 4 30 30 H 1.08004 * 119.87061 * 179.84897 * 9 7 6 31 31 H 1.08000 * 119.89101 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47104 * 169.99938 * 13 12 11 33 33 H 1.08998 * 109.46828 * 50.00770 * 13 12 11 34 34 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 35 35 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 36 36 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0826 -0.7951 1.2052 5 6 3.3191 -1.4587 0.6323 6 6 4.4030 -2.0551 1.2421 7 6 5.4222 -2.5910 0.4745 8 17 6.7868 -3.3411 1.2420 9 6 5.3513 -2.5277 -0.9063 10 6 4.2678 -1.9349 -1.5198 11 6 3.2363 -1.3949 -0.7533 12 7 2.0545 -0.7590 -1.1561 13 6 1.0681 -1.7360 -1.6358 14 6 1.5370 -2.3214 -2.9694 15 6 0.5092 -3.3386 -3.4693 16 6 0.9707 -3.9148 -4.7831 17 1 1.9040 -3.5884 -5.2178 18 6 0.2021 -4.8593 -5.4297 19 7 -0.9341 -5.2571 -4.9001 20 14 0.7738 -5.5729 -7.0586 21 1 2.0852 -6.2443 -6.8717 22 1 -0.2237 -6.5603 -7.5438 23 1 0.9142 -4.4812 -8.0553 24 1 -0.3634 -1.0259 0.0590 25 1 -0.3633 0.5640 0.8592 26 1 -0.3634 0.4621 -0.9179 27 1 2.3481 -0.1235 2.0216 28 1 1.3622 -1.5426 1.5376 29 1 4.4565 -2.1035 2.3196 30 1 6.1478 -2.9437 -1.5054 31 1 4.2186 -1.8883 -2.5977 32 1 0.1058 -1.2430 -1.7737 33 1 0.9644 -2.5369 -0.9038 34 1 2.4993 -2.8144 -2.8315 35 1 1.6406 -1.5205 -3.7013 36 1 0.4051 -4.1397 -2.7374 37 1 -0.4529 -2.8453 -3.6072 38 1 -1.4747 -5.9219 -5.3548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655145504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:44 Heat of formation + Delta-G solvation = 18.926630 kcal Electronic energy + Delta-G solvation = -19319.948380 eV Core-core repulsion = 16380.715350 eV Total energy + Delta-G solvation = -2939.233030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01895 -37.61506 -36.11590 -34.35134 -32.60765 -31.15372 -30.97364 -29.11287 -26.57942 -26.19577 -23.26752 -22.16096 -21.48577 -20.29652 -19.77820 -16.74215 -16.42574 -16.09819 -16.00603 -15.24252 -14.59177 -14.37288 -14.18868 -13.60698 -13.37775 -13.09980 -12.86956 -12.75418 -12.20574 -12.05435 -11.90124 -11.55828 -11.53096 -11.36644 -11.21116 -10.98689 -10.83288 -10.79598 -10.54023 -10.39658 -9.70604 -9.40119 -9.18789 -8.99677 -8.87014 -8.33788 -7.76242 -5.99414 -4.01521 1.14933 1.29757 2.11596 3.34174 3.38356 3.40905 3.53747 3.75583 4.45006 4.46746 4.68707 4.78949 4.90739 5.13958 5.22492 5.31934 5.36576 5.43442 5.50632 5.59338 5.68141 5.68935 5.80081 5.88866 5.96463 6.10601 6.17345 6.23398 6.24148 6.40582 6.55350 6.70157 6.74183 7.10290 7.16672 7.36592 7.66808 7.81412 8.00109 8.43326 9.04932 9.62483 11.12029 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.004711 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.717320 B = 5941.958879 C = 7429.285079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.075 3.925 3 H 0.095 0.905 4 C -0.103 4.103 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.053 4.053 8 Cl -0.079 7.079 9 C -0.093 4.093 10 C -0.096 4.096 11 C 0.114 3.886 12 N -0.491 5.491 13 C 0.053 3.947 14 C -0.112 4.112 15 C 0.024 3.976 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.788 9.493 14.026 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 H 0.113 0.887 4 C -0.141 4.141 5 C -0.139 4.139 6 C -0.101 4.101 7 C -0.080 4.080 8 Cl -0.050 7.050 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.017 3.983 12 N -0.208 5.208 13 C -0.071 4.071 14 C -0.150 4.150 15 C -0.013 4.013 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.769 9.670 13.607 18.856 hybrid contribution 0.264 -1.084 -0.211 1.135 sum 9.033 8.586 13.396 18.296 Atomic orbital electron populations 1.22088 0.93481 1.03033 1.02731 1.22705 0.95540 0.97964 0.86961 0.88734 1.21776 0.94118 0.99170 0.99065 1.20889 0.96646 1.01527 0.94866 1.20110 0.92045 0.98300 0.99688 1.20620 0.91268 1.03184 0.92914 1.98347 1.43775 1.81119 1.81742 1.20831 0.98670 0.99339 0.92336 1.20640 0.91583 0.98649 1.00679 1.19667 0.92691 0.94022 0.91912 1.60398 1.03229 1.24886 1.32284 1.22570 0.94318 0.92223 0.98006 1.21798 1.00587 0.99180 0.93395 1.19043 0.93571 0.92941 0.95784 1.21184 1.06255 1.22549 1.05686 0.92743 1.25010 0.94967 0.96640 0.97762 1.69949 1.12894 1.31565 1.39181 0.86671 0.78420 0.78910 0.84090 1.20243 1.21301 1.20216 0.91508 0.91717 0.91020 0.89762 0.89749 0.85481 0.84611 0.84242 0.89560 0.94564 0.92955 0.92516 0.96842 0.96618 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 7.86 37.15 0.29 -1.34 16 2 C 0.08 0.89 3.97 -66.32 -0.26 0.63 16 3 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.10 -1.14 6.51 -26.61 -0.17 -1.31 16 5 C -0.14 -1.82 6.23 -104.04 -0.65 -2.47 16 6 C -0.08 -1.03 9.82 -39.64 -0.39 -1.42 16 7 C -0.05 -0.68 6.32 -39.46 -0.25 -0.93 16 8 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.42 16 9 C -0.09 -1.23 9.81 -39.64 -0.39 -1.62 16 10 C -0.10 -1.41 8.55 -39.27 -0.34 -1.75 16 11 C 0.11 1.72 5.29 -83.38 -0.44 1.28 16 12 N -0.49 -7.40 5.05 -161.56 -0.82 -8.22 16 13 C 0.05 0.90 3.71 -3.83 -0.01 0.89 16 14 C -0.11 -2.30 5.02 -26.73 -0.13 -2.44 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 20 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.78 7.63 -51.93 -0.40 0.39 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 29 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.14 2.07 7.15 -52.49 -0.38 1.70 16 32 H 0.09 1.41 5.77 -51.93 -0.30 1.11 16 33 H 0.04 0.64 7.99 -51.93 -0.41 0.23 16 34 H 0.05 1.07 5.55 -51.93 -0.29 0.78 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -30.12 320.47 -10.52 -40.64 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.45 Total: -1.88 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.30 Total: -23.44 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.08 Total: -34.43 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.12 -10.52 -40.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655145504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.571 kcal (2) G-P(sol) polarization free energy of solvation -30.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds